mRNA_Ecto-sp13_S_contig627.17003.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig627.17003.1
Unique NamemRNA_Ecto-sp13_S_contig627.17003.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig627.17003.1 vs. uniprot
Match: A0A6H5JU68_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JU68_9PHAE)

HSP 1 Score: 650 bits (1676), Expect = 3.010e-231
Identity = 400/433 (92.38%), Postives = 402/433 (92.84%), Query Frame = 1
Query:    1 MEGAGPPLLRYAAQPDVVLAQERDLYYANTLLGEGTSELAESLLGARRVMILAPELRALASCLYFGLTNLAGKQTLGQEYCGIDLVPSGRGGGREYSPLPRRPLQAYTFLRVAVPYLQERMREGWHGLRSLRDPFGSGGAAXXXXXXXXXXXXXXXXXXXVGIAVSSGSGETAA-DRAGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFLRRVLAWARRRRPAMSRVLEWALRLHLAAFYFDGRFANVAMRAVGARLAYARPEQEAPRARYAVLGLLLLLQAAAEAATASAETAERWRATTRAALSGRFPRSTETGAVCGEGGGPIDLGEGVGDTALPPRVPAATRGRTPADVALFPPSRRRCSLCMSSRENVAATPCGHLFCWECIVGWCQTNPECPLCRQPVAPQSIVCLYQYA 1296
            MEG  P LLRYAAQPDVVL+QERDLYYAN LLGEGTSELAE+LLGARRVMILAPELRALASCLYFGLTNLAGKQTLGQEYCGIDLVPSGRGGGRE SPL RRPLQAYTFLRVAVPYLQERMREGWHGLRSLRDPFGSGGAA     XXXXXXXXX     VGIAVSS SG TAA DRA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFLRRVLAWARRRRPAMS VLEWALRLHLAAFYFDGRFANVAMRAVGARLAYARPEQEA R RYAVLGLLLLLQAAAEAATASAETAERWRAT RAALS  FPRSTE  AVCGEGGGP DLGEGVGDTALPPRVPAATRGRTPADVALFPPSRRRCSLCMSSRENVAATPCGHLFCWECIVGWCQTNPECPLCRQPVAPQSIVCLYQYA
Sbjct:    1 MEGGDPTLLRYAAQPDVVLSQERDLYYANRLLGEGTSELAETLLGARRVMILAPELRALASCLYFGLTNLAGKQTLGQEYCGIDLVPSGRGGGRESSPLSRRPLQAYTFLRVAVPYLQERMREGWHGLRSLRDPFGSGGAATSLAAXXXXXXXXXAVAPPVGIAVSSVSGGTAAADRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFLRRVLAWARRRRPAMSGVLEWALRLHLAAFYFDGRFANVAMRAVGARLAYARPEQEAARTRYAVLGLLLLLQAAAEAATASAETAERWRATARAALSESFPRSTEGEAVCGEGGGPSDLGEGVGDTALPPRVPAATRGRTPADVALFPPSRRRCSLCMSSRENVAATPCGHLFCWECIVGWCQTNPECPLCRQPVAPQSIVCLYQYA 433          
BLAST of mRNA_Ecto-sp13_S_contig627.17003.1 vs. uniprot
Match: A0A836CLL0_9STRA (Peroxisome biogenesis factor 10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL0_9STRA)

HSP 1 Score: 190 bits (483), Expect = 2.270e-52
Identity = 173/411 (42.09%), Postives = 206/411 (50.12%), Query Frame = 1
Query:   64 ERDLYYANTLLGEGTSELAESLLGARRVMILAPELRALASCLYFGLTNLAGKQTLGQEYCGIDLVPSGRGGGREYSPLPRRPLQAYTFLRVAVPYLQERMREGWHGLRSLRDPFGSGGAAXXXXXXXXXXXXXXXXXXXVGIAVSSGSGETAA-DRAGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFLRRVLAWARRRRPAMSRVLEWALRLHLAAFYFDGRFANVAMRAVGARLAYARPEQEAPRARYAVLGLLLLLQAAAEAATASAETAERWRATTRAALSGRFPRSTETGAVCGEGGGPIDLGEGVGDTALPPRVPAATRGRTPADVALFPPSRRRCSLCMSSRENVAATPCGHLFCWECIVGWCQTNPECPLCRQPVAPQSIVCLYQY 1293
            ERD YY   L  +G  ++ ES +G RR  +LA EL  LA  LY GLT LAG+QT+GQEYC  DL+ S  G       +P      Y+ + V  PYL  R+  GW  LR +R+PF     A                      A ++     A  D  GS           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 +RVL W    HLA F+ +GR+AN AMRA   RL Y R  Q+AP  RY +LG+L+L +   E    +A                        G +  +G G               RVP  +   T A        R RC+LCM  RE+ AAT CGHLFCWECIVGWC+TNPECPLCRQP  PQSIVC+Y Y
Sbjct:    2 ERDTYYVGAL-ADGLKDVLESCMGVRRTSMLAAELNLLAGTLYQGLTVLAGRQTVGQEYC--DLMFSRNG----LCDVPLSARAGYSLVEVCWPYLLSRLDTGWPRLRDIREPFDRHAEAARIRDAMRAHAAESESQQPTSAAEAAAVTPVAPPDNDGSRDAAYSVCSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------XGAARVLRWLGAFHLALFFLNGRYANAAMRAARVRLMYNRA-QDAPLPRYTILGVLMLARFGFEFGAQAARKLH--------------------GIIFSDGDGSGGXXXXXKANLASQRVPGLSGSDTEAAAR-----RHRCALCMGPREHTAATLCGHLFCWECIVGWCETNPECPLCRQPAEPQSIVCVYHY 369          
BLAST of mRNA_Ecto-sp13_S_contig627.17003.1 vs. uniprot
Match: A0A0A0L2W0_CUCSA (RING-type domain-containing protein n=13 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0L2W0_CUCSA)

HSP 1 Score: 135 bits (341), Expect = 8.110e-32
Identity = 126/433 (29.10%), Postives = 184/433 (42.49%), Query Frame = 1
Query:   13 GPPLLRYAAQPDVVLAQERDLYYANTLLGEGTSELAESLLGARRVMILAPELRALASCLYFGLTNLAGKQTLGQEYCGIDLVPSGRGGGREYSPLPRRPLQAYTFLRVAVPYLQERM--REGWHGLR---SLRDPFGSGGAAXXXXXXXXXXXXXXXXXXXVGIAVSSGSGETAADRAGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFLRRVLAWARRRRPAMSRVLEWALRLHLAAFYFDGRFANVAMRAVGARLAY-ARPEQEAPRARYAVLGLLLLLQAAAEAATASAETA-ERWRATTRAALSGRFPRSTETGA-VCGEGGGPIDLGEGVGDTALPPRVPAATRGRTPADVALFPPSRRRCSLCMSSRENVAATPCGHLFCWECIVGWCQTNPECPLCRQPVAPQSIVCLY 1287
            GP     AAQP+++ A E+D  YA+ +  +   +    L GAR  +    E + L   LY+ LT  +G+QTLG+EYC I+ V    G     SP P R    +   + AVPY+ ER+  R    G+    SL D F                                  GE A+  A S                                             +LR V  W     P +   L+ ALR +L  FYF+G + +++ RA G R  +  +P  + PR  Y +LG+ LL+Q    AA     ++     ++   A  G  P S+  G  V  E G  I +    GD+      P+ +   T + ++       +C+LC+S+R++  ATPCGH+FCW CI+ WC   PECPLCR P+   S+VCLY
Sbjct:   28 GPHRFPLAAQPEIMRAAEKDDQYASFVY-DACRDAFRHLFGARLAVAYQSETKLLGQMLYYVLTTGSGQQTLGEEYCDINQVSGPYG----LSPNPAR-RALFIVYQTAVPYIAERISSRVASRGIMLADSLSDEF---------------------------------YGEIASGDASSQSLLTMEIQPSSTPGSASYTMRLRAKISRL---------------WLRTVRCWPSVL-PLVREFLQLALRTNLMFFYFEGLYYHISKRAAGIRYVFIGKPSNQRPR--YQILGVFLLIQLCIIAAEGLRRSSLSSVSSSINPASFGANPSSSGRGLPVLNEEGNLISVD---GDSGNWVSDPSHSEFNTGSGIS-------KCTLCLSNRQHPTATPCGHVFCWNCIMEWCNEKPECPLCRTPINHSSLVCLY 393          
BLAST of mRNA_Ecto-sp13_S_contig627.17003.1 vs. uniprot
Match: A0A1U8E1S1_CAPAN (peroxisome biogenesis factor 10 isoform X1 n=7 Tax=Solanoideae TaxID=424551 RepID=A0A1U8E1S1_CAPAN)

HSP 1 Score: 134 bits (338), Expect = 1.970e-31
Identity = 127/431 (29.47%), Postives = 185/431 (42.92%), Query Frame = 1
Query:   34 AAQPDVVLAQERDLYYANTLLGEGTSELAESLLGARRVMILAPELRALASCLYFGLTNLAGKQTLGQEYCGIDLVPSGRGGGREYSPLPRRPLQAYTFLRVAVPYLQERM--REGWHGLR---SLRD-PFGSGGAAXXXXXXXXXXXXXXXXXXXVGIAVSSGSGETAADRAGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFLRRVLAWARRRRPAM----SRVLEWALRLHLAAFYFDGRFANVAMRAVGARLAY-ARPEQEAPRARYAVLGLLLLLQAAAEAATASAETA-ERWRATTRAALSGRFPRSTETGA-VCGEGGGPIDLGEGVGDTALPPRVPAATRGRTPADVALFPPSRRRCSLCMSSRENVAATPCGHLFCWECIVGWCQTNPECPLCRQPVAPQSIVCLY 1287
            AAQP+++ A E+D  YA+ +  E   +    L G R  +    E + L   LY+ LT  AGKQTLG+EYC I  V    G     SP P R    + F + AVPY+ ER+  R    G+    S+ D PFG    +                     + + S S  T++  A S                                            A +R    +A RR P++      +L+  +R +L  FYF+G + +++ RA G    +  +P  + PR  Y +LG+ LL+Q    AA     ++     A+ + A  G +  S   G  V  E G  I            P     ++G +P+          +C+LC+SSR++  ATPCGH+FCW CI+ WC   PECPLCR PV   S+VCLY
Sbjct:   30 AAQPEIMRAAEKDDQYASFVY-EACRDAFRHLFGTRVAVAYQNEAKLLGQMLYYMLTTGAGKQTLGEEYCDITQVAGPYG----LSPTPAR-RALFIFHQSAVPYIAERVSSRVASRGITLADSMADYPFGDVPTSSNEAEPSPT------------VEIQSYSTSTSSISALS-----------------------------------------LLKAKMRDFWLYAVRRWPSVLPLVREILQLVIRTNLMFFYFEGLYYHISKRAAGIHYVFIGKPMNQRPR--YQILGVFLLIQLCILAAEGLRRSSLSSVSASAQQAPFGTYRTSAGRGLPVLNEEGNLITAESEKYGLVAEPTSTLESQGSSPS----------KCTLCLSSRQHPTATPCGHVFCWNCIMEWCNEKPECPLCRSPVTHSSLVCLY 389          
BLAST of mRNA_Ecto-sp13_S_contig627.17003.1 vs. uniprot
Match: A0A328E4H4_9ASTE (RING-type domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328E4H4_9ASTE)

HSP 1 Score: 132 bits (332), Expect = 1.460e-30
Identity = 129/443 (29.12%), Postives = 180/443 (40.63%), Query Frame = 1
Query:    7 GAGPPLLRYAAQPDVVLAQERDLYYANTLLGEGTSELAESLLGARRVMILAPELRALASCLYFGLTNLAGKQTLGQEYCGIDLVPSGRGGGREYSPLPRRPLQAYTFLRVAVPYLQERM--REGWHGLRSLRDPFGSGGAAXXXXXXXXXXXXXXXXXXXVGIAVSSGSGETAADRAGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFLRRVLAWARRRRPAM----SRVLEWALRLHLAAFYFDGRFANVAMRAVGARLAYARPEQEAPRARYAVLGLLLLLQAAAEAATASAETAERWRATTRAALSGRFPRSTETGA----------VCGEGGGPIDLGEGVGDTALPPRVPAATRGRTPADVALFPPSRRRCSLCMSSRENVAATPCGHLFCWECIVGWCQTNPECPLCRQPVAPQSIVCLY 1287
            G G      A QP+++ A E+D  Y   L+ E   +    L G R  +    E + L   LYF LT  AGKQTLG+EYC I  V    G      P P R    + F +  VPYL ER   R    G+ +L DPF                          G + SSG  E +     +S                                           A LRR    A +R P++      +L+  +R +L  FYF+G + + + RA G R  +   +Q   R RY +LG+ LL+Q    AA       ER R ++ ++LS    + T  G           +  E G  I  G   G         +  + +T          + +C+LC+S+R++  ATPCGH+FCW CI+ WC   PECPLCR P    S+VCLY
Sbjct:   24 GGGVRSFPMAQQPEIMRAAEKDDQYT-LLVYESCRDAFRHLFGTRVAVSYQNETKLLGQMLYFLLTTGAGKQTLGEEYCDITQVAGPFG----VPPTPAR-RALFIFYQTTVPYLAERFSSRLASEGI-TLDDPFDD-------------------DYSFGGASASSGRVEASTTSETTSFSSRESLSFFSRLK-----------------------------AKLRRCWLHAVQRWPSVFPLAREILQLIIRANLMFFYFEGLYYHSSKRASGIRYVFIG-KQANQRPRYQILGVFLLIQLCVLAA-------ERLRRSSLSSLSASV-QQTPLGTYQYSPGNCVPILDEEGNLITGGSEKGSYVFQSSSTSEKQSQTSG--------QSKCTLCLSNRQHPTATPCGHVFCWNCIMEWCNEKPECPLCRSPATHSSLVCLY 394          
BLAST of mRNA_Ecto-sp13_S_contig627.17003.1 vs. uniprot
Match: M0ZWN8_SOLTU (Peroxisome biogenesis factor 10 n=9 Tax=Solanaceae TaxID=4070 RepID=M0ZWN8_SOLTU)

HSP 1 Score: 132 bits (331), Expect = 1.980e-30
Identity = 125/428 (29.21%), Postives = 183/428 (42.76%), Query Frame = 1
Query:   34 AAQPDVVLAQERDLYYANTLLGEGTSELAESLLGARRVMILAPELRALASCLYFGLTNLAGKQTLGQEYCGIDLVPSGRGGGREYSPLPRRPLQAYTFLRVAVPYLQERM--REGWHGLRSLRDPFGSGGAAXXXXXXXXXXXXXXXXXXXVGIAVSSGSGETAADRAGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFLRRVLAWARRRRPAM----SRVLEWALRLHLAAFYFDGRFANVAMRAVGARLAY-ARPEQEAPRARYAVLGLLLLLQA---AAEAATASAETAERWRATTRAALSGRFPRSTETGAVCGEGGGPIDLGEGVGDTALPPRVPAATRGRTPADVALFPPSRRRCSLCMSSRENVAATPCGHLFCWECIVGWCQTNPECPLCRQPVAPQSIVCLY 1287
            AAQP+++ A E+D  YA+ +  E   +    L G R  +    E + L   LY+ LT  AGKQTLG+EYC I  V    G     SP P R    + F + AVPY+ ER+  R   H + +L D                                + G   T+++ A +S                                           A +R    +  RR P+M      +L+  +R +L  FYF+G + +++ RA G    +  +P  + PR  Y +LG+ LL+Q    AAE    S+ ++    A  + A  G +  S   G        P+   EG   TA   +        + ++     PS+  C+LC+SSR++  ATPCGH+FCW CI+ WC   PECPLCR PV   S+VCLY
Sbjct:   34 AAQPEIMRAAEKDDQYASFVY-EACRDAFRHLFGTRVAVTYQNEAKLLGQMLYYMLTTGAGKQTLGEEYCDITQVAGPYG----LSPTPAR-RALFIFYQSAVPYIAERVSSRAASHDI-TLADSMAD---------------------------YAFGDDPTSSNEAEASPTFEIHSSSTSAPSISALSRLK---------------------AKIRDFWLYTIRRWPSMLPLAREILQLVIRTNLMFFYFEGLYYHISKRAAGIHYVFIGKPMNQRPR--YQILGVFLLIQLCILAAEGLRRSSLSSVSTSA--QQAPFGTYRTSAGRGL-------PVLNEEGNLITAETEKYGLVAESTSTSESQGNSPSK--CTLCLSSRQHPTATPCGHVFCWNCIMEWCNEKPECPLCRSPVTHSSLVCLY 393          
BLAST of mRNA_Ecto-sp13_S_contig627.17003.1 vs. uniprot
Match: UPI0009E5C671 (peroxisome biogenesis factor 10 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E5C671)

HSP 1 Score: 130 bits (327), Expect = 6.370e-30
Identity = 120/426 (28.17%), Postives = 178/426 (41.78%), Query Frame = 1
Query:   34 AAQPDVVLAQERDLYYANTLLGEGTSELAESLLGARRVMILAPELRALASCLYFGLTNLAGKQTLGQEYCGIDLVPSGRGGGREYSPLPRRPLQAYTFL--RVAVPYLQERM--REGWHGLRSLRDPFGSGGAAXXXXXXXXXXXXXXXXXXXVGIAVSSGSGETAADRAGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFLRRVLAWARRRRPAMSRVLEWALRLHLAAFYFDGRFANVAMRAVGARLAY-ARPEQEAPRARYAVLGLLLLLQAAAEAATASAETAERWRATTRAALSGRFPRSTETGAVCGEGGGPIDLGEG---VGDTALPPRVPAATRGRTPADVALFPPSRRRCSLCMSSRENVAATPCGHLFCWECIVGWCQTNPECPLCRQPVAPQSIVCLY 1287
            AAQP+++ A E+D  YA   + +   +    L G R V+    E++ L   LY+ LT  AG+QTLG+EYC I  V +  G       LP  P +   F+  +  VPYL ER+  R   HG+  + D F  G                                +T    +GSS                                                VL +AR          + ALR +L  FYF+G + +++ RA G R  +  +P  +  R RY +LG+ LL+Q    AA       E  R +  +++S     ST  G +   G G   L E    + D  +  ++ +          +  P S  +C+LC+S+R++  AT CGH+FCW CI+ WC   PECPLCR P+   S+VC+Y
Sbjct:   30 AAQPEIMRAAEKDEQYA-AYVHDACRDAFRHLFGTRVVVAFQNEIKLLGQTLYYLLTTGAGQQTLGEEYCDISQVANSYG-------LPPTPARRVVFILYQTVVPYLAERLSSRMTAHGM--IMDDFLFGEQERNYLR----------------------ENQTQPSSSGSSVSRGLLISAISKFKEKLIGLWLWAVQKWPM------------------VLPFARE-------AAQLALRANLMFFYFEGLYYHISKRAAGIRYVFIGKPSNQ--RMRYQILGIFLLVQLCILAA-------EGLRRSNFSSISSSGHPSTLGGHLSSSGRGLPVLNEDGNLISDATI--KMGSLGTDSLTTSESQAPVSIGKCTLCLSTRQHPTATTCGHVFCWNCIMEWCNEKPECPLCRTPITHSSLVCIY 387          
BLAST of mRNA_Ecto-sp13_S_contig627.17003.1 vs. uniprot
Match: A0A7I8KU34_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KU34_SPIIN)

HSP 1 Score: 130 bits (327), Expect = 6.710e-30
Identity = 118/430 (27.44%), Postives = 180/430 (41.86%), Query Frame = 1
Query:   16 PP--LLRYAAQPDVVLAQERDLYYANTLLGEGTSELAESLLGARRVMILAPELRALASCLYFGLTNLAGKQTLGQEYCGIDLVPSGRGGGREYSPLPRRPLQAYTFLRVAVPYLQERM--REGWHGLRSLRDPFGSGGAAXXXXXXXXXXXXXXXXXXXVGIAVSSGSGETAADRAGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFLRRVLAWARRRRPAMSRVLEWALRLHLAAFYFDGRFANVAMRAVGARLAY-ARPEQEAPRARYAVLGLLLLLQAAAEAATASAETAERWRATTRAALSGRFPRSTETGAVCGEGGG-PIDLGEGVGDTALPPRVPAATRGRTPADVALFPPSRRRCSLCMSSRENVAATPCGHLFCWECIVGWCQTNPECPLCRQPVAPQSIVCLY 1287
            PP  L   AAQP+V+ A E+D  YA+  L +   +    L G R  +    E + +   LY+ LT  +G+QTLG+EYC I  V     G     P P +    +   + A+PYL ER+  R    G        G  G++                     I  S G G+   D + SS                                            +L  V  W     P +  +L+  LR +L  FYF+G + +++ RA G R  +  +P  + PR  Y +LG+ LL+Q             +  R +  ++++    +++  G     GGG PI   +G+  T       +      PA  +       +C+LC+ SR++  ATPCGH+FCW CI+ WC   PECPLCR P+A  ++VC+Y
Sbjct:   20 PPARLFPLAAQPEVMRAAEKDEQYAS-FLHDACRDAFRHLFGTRAAVAYQSETKLVGQTLYYLLTTGSGQQTLGEEYCDITQVA----GQHSLPPTPAK-RALFIIYQSAIPYLAERISTRMAARGTLLAESMEGFYGSSNLESSQ---------------IQTSYGPGD---DHSSSSTVTMPVAFLLKLRTKFYG-------------------------VWLWTVQKWPSAL-PYVREILQLVLRTNLMFFYFEGLYYHISKRAAGIRYVFIGKPLNQRPR--YQILGVFLLIQLCILGV-------KGLRQSNLSSIASSVHQASLGGRQYSTGGGLPILNEDGIAITGSNDSRGSWAVDSMPASESQASVGLSKCTLCLGSRQHPTATPCGHVFCWNCIMEWCNEKPECPLCRSPIAHSTLVCIY 390          
BLAST of mRNA_Ecto-sp13_S_contig627.17003.1 vs. uniprot
Match: A0A6I9S4B6_ELAGV (peroxisome biogenesis factor 10 n=2 Tax=Arecaceae TaxID=4710 RepID=A0A6I9S4B6_ELAGV)

HSP 1 Score: 130 bits (327), Expect = 6.820e-30
Identity = 116/430 (26.98%), Postives = 174/430 (40.47%), Query Frame = 1
Query:   34 AAQPDVVLAQERDLYYANTLLGEGTSELAESLLGARRVMILAPELRALASCLYFGLTNLAGKQTLGQEYCGIDLVPSGRGGGREYSPLPRRPLQAYTFL--RVAVPYLQERM--REGWHGLRSLRDPFGSGGAAXXXXXXXXXXXXXXXXXXXVGIAVSSGSGETAADRAGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFLRRVLAWARRRRPAMSRVLEWALRLHLAAFYFDGRFANVAMRAVGARLAY-ARPEQEAPRARYAVLGLLLLLQAAAEAATASAET-AERWRATTRAALSGRFPRSTETGA-VCGEGGGPI-----DLGEGVGDTALPPRVPAATRGRTPADVALFPPSRRRCSLCMSSRENVAATPCGHLFCWECIVGWCQTNPECPLCRQPVAPQSIVCLY 1287
            AAQP+++ A E+D +YA   + +   +    L G R  +    E++ L   LY+ LT  AG+QTLG+EYC I  V S  G       LP  P +   F+     +PYL ER+  R    G+      FG    +                     +++S+ S                                                       +L+ V  W     P    +L+ A R +L  FYF+G + +++ RA G R  +  +P  + PR  Y +LG+ LL+Q     A     +      ++      G    ST  G  V  E G P+     D G    D+   P  P  + G +            +C+LC+S+R++  ATPCGH+FCW CI+ WC   PECPLCR P+   S+VC+Y
Sbjct:   32 AAQPEIMRAAEKDDHYA-AFVHDACRDAFRHLFGTRMAVAYQSEIKLLGQTLYYLLTTGAGQQTLGEEYCDISQVASSHG-------LPPTPARRALFIVYETIIPYLAERISSRMAARGIILADSQFGELYGSDHPRRNQVQSSDAAESSNSTSVSISALS----------------------------------------------KFRERLHGLWLQAVQKWPTVL-PYAREILQLAFRTNLMFFYFEGLYYHISKRAAGIRYVFIGKPLNQRPR--YQILGVFLLIQLCILGAEGLRRSNLSSITSSVHQTSPGGHHSSTGRGMPVLNEDGNPVTNYSPDKGSWAADSLAVPE-PQGSGGMS------------KCTLCLSTRQHPTATPCGHVFCWNCIMEWCNEKPECPLCRTPITHSSLVCIY 391          
BLAST of mRNA_Ecto-sp13_S_contig627.17003.1 vs. uniprot
Match: A0A218XUA6_PUNGR (RING-type domain-containing protein n=2 Tax=Punica granatum TaxID=22663 RepID=A0A218XUA6_PUNGR)

HSP 1 Score: 129 bits (325), Expect = 1.110e-29
Identity = 122/434 (28.11%), Postives = 178/434 (41.01%), Query Frame = 1
Query:   34 AAQPDVVLAQERDLYYANTLLGEGTSELAESLLGARRVMILAPELRALASCLYFGLTNLAGKQTLGQEYCGIDLVPSGRGGGREYSPLPRRPLQAYTFL--RVAVPYLQERM--REGWHGLRSLRD-----PFGSGGAAXXXXXXXXXXXXXXXXXXXVGIAVSSGSGETAADRAGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFLRRVLAWARRRRPAM----SRVLEWALRLHLAAFYFDGRFANVAMRAVGARLAY-ARPEQEAPRARYAVLGLLLLLQAAAEAATASAET-AERWRATTRAALSGRFPRSTETGA-VCGEGGGPIDLGEGVGDTALPPRVPAATRGRTPADVALFPPSRRRCSLCMSSRENVAATPCGHLFCWECIVGWCQTNPECPLCRQPVAPQSIVCLY 1287
            AAQP+++ A E+D  YA+ +  +   +    L G R  +    E + L   LY+ LT  +G+QTLG+EYC I  V    G       LP  P +   F+  + A PY+ ER+  R    G+ SL D     P+G  G                       + +++G+  +   R   S                                            +L  V  W     PAM      VL+  LR +L  FYF+G + +++ RA G R  +  +P  + PR  Y +LG+ LL+Q    AA     +      ++   A  G    S   G  V  E G  I +    G     P     T G +            +C+LC+S+R++  ATPCGH+FCW CI+ WC   PECPLCR P+   S+VCLY
Sbjct:   25 AAQPEIMRAAEKDDQYASFVY-DACRDAIRHLFGTRVAVAYQNETQLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGPYG-------LPPTPARRVLFIVYQTAFPYIAERISSRVASRGI-SLSDTYSDEPYGVSGLDNNEDQ----------------LIMTTGAPSSPTRRENLSVLSRFRRRLNGL--------------------------------WLNAVQRW-----PAMLPIAREVLQLVLRTNLMFFYFEGLYYHISKRAAGIRYVFIGKPSNQRPR--YQILGIFLLIQLCILAAEGLRRSNLSSITSSVHQASLGSHQTSAGRGLPVLNEEGNVISVDSDKGSWTNDPSTSEGTSGIS------------KCTLCLSNRQHPTATPCGHVFCWNCIMEWCNEKPECPLCRSPITHSSLVCLY 382          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig627.17003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JU68_9PHAE3.010e-23192.38RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A836CLL0_9STRA2.270e-5242.09Peroxisome biogenesis factor 10 n=1 Tax=Tribonema ... [more]
A0A0A0L2W0_CUCSA8.110e-3229.10RING-type domain-containing protein n=13 Tax=Cucur... [more]
A0A1U8E1S1_CAPAN1.970e-3129.47peroxisome biogenesis factor 10 isoform X1 n=7 Tax... [more]
A0A328E4H4_9ASTE1.460e-3029.12RING-type domain-containing protein n=3 Tax=Cuscut... [more]
M0ZWN8_SOLTU1.980e-3029.21Peroxisome biogenesis factor 10 n=9 Tax=Solanaceae... [more]
UPI0009E5C6716.370e-3028.17peroxisome biogenesis factor 10 n=1 Tax=Phalaenops... [more]
A0A7I8KU34_SPIIN6.710e-3027.44Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A6I9S4B6_ELAGV6.820e-3026.98peroxisome biogenesis factor 10 n=2 Tax=Arecaceae ... [more]
A0A218XUA6_PUNGR1.110e-2928.11RING-type domain-containing protein n=2 Tax=Punica... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig627contigEcto-sp13_S_contig627:17245..19815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score671.4
Seed ortholog evalue2.8e-190
Seed eggNOG ortholog2880.D8LAW2
Preferred namePEX10
Model size1449
KEGG koko:K13346
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000038,GO:0000209,GO:0000280,GO:0000910,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005829,GO:0006082,GO:0006464,GO:0006513,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007049,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007285,GO:0007286,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009062,GO:0009790,GO:0009791,GO:0009793,GO:0009853,GO:0009987,GO:0010154,GO:0010381,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016049,GO:0016054,GO:0016558,GO:0016567,GO:0016740,GO:0017038,GO:0019395,GO:0019538,GO:0019752,GO:0019787,GO:0019953,GO:0022402,GO:0022406,GO:0022412,GO:0022414,GO:0030154,GO:0030258,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032991,GO:0033036,GO:0033206,GO:0033365,GO:0034440,GO:0034613,GO:0036211,GO:0040007,GO:0042579,GO:0042760,GO:0042886,GO:0043094,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044743,GO:0045184,GO:0046395,GO:0046872,GO:0046907,GO:0046914,GO:0048137,GO:0048232,GO:0048285,GO:0048316,GO:0048468,GO:0048515,GO:0048588,GO:0048589,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051301,GO:0051321,GO:0051640,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0055114,GO:0061458,GO:0061640,GO:0065002,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0098588,GO:0098805,GO:0140013,GO:0140056,GO:0140096,GO:1901564,GO:1901575,GO:1903046,GO:1990351,GO:1990415,GO:1990429
Exons4
EggNOG free text desc.cAMP binding
EggNOG OGsCOG5574@1,KOG0317@2759
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-27_006210.1
Cds size1299
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463870.9884202-UTR-Ecto-sp13_S_contig627:17244..173941681463870.9884202-UTR-Ecto-sp13_S_contig627:17244..17394Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig627 17245..17394 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463870.9996934-CDS-Ecto-sp13_S_contig627:17394..176401681463870.9996934-CDS-Ecto-sp13_S_contig627:17394..17640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig627 17395..17640 -
1681463871.0085163-CDS-Ecto-sp13_S_contig627:17892..185911681463871.0085163-CDS-Ecto-sp13_S_contig627:17892..18591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig627 17893..18591 -
1681463871.0172222-CDS-Ecto-sp13_S_contig627:18886..190261681463871.0172222-CDS-Ecto-sp13_S_contig627:18886..19026Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig627 18887..19026 -
1681463871.0261238-CDS-Ecto-sp13_S_contig627:19601..198151681463871.0261238-CDS-Ecto-sp13_S_contig627:19601..19815Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig627 19602..19815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig627.17003.1prot_Ecto-sp13_S_contig627.17003.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig627 17395..19815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig627.17003.1

>prot_Ecto-sp13_S_contig627.17003.1 ID=prot_Ecto-sp13_S_contig627.17003.1|Name=mRNA_Ecto-sp13_S_contig627.17003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=433bp
MEGAGPPLLRYAAQPDVVLAQERDLYYANTLLGEGTSELAESLLGARRVM
ILAPELRALASCLYFGLTNLAGKQTLGQEYCGIDLVPSGRGGGREYSPLP
RRPLQAYTFLRVAVPYLQERMREGWHGLRSLRDPFGSGGAAAALAAARAR
ARARVAVAPPVGIAVSSGSGETAADRAGSSEEEEENVVPTEAAIDVSSGE
SGGGARAPPLASPSARSSPPPVVAFLRRVLAWARRRRPAMSRVLEWALRL
HLAAFYFDGRFANVAMRAVGARLAYARPEQEAPRARYAVLGLLLLLQAAA
EAATASAETAERWRATTRAALSGRFPRSTETGAVCGEGGGPIDLGEGVGD
TALPPRVPAATRGRTPADVALFPPSRRRCSLCMSSRENVAATPCGHLFCW
ECIVGWCQTNPECPLCRQPVAPQSIVCLYQYA*
back to top

mRNA from alignment at Ecto-sp13_S_contig627:17245..19815-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig627.17003.1 ID=mRNA_Ecto-sp13_S_contig627.17003.1|Name=mRNA_Ecto-sp13_S_contig627.17003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2571bp|location=Sequence derived from alignment at Ecto-sp13_S_contig627:17245..19815- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGGTGCCGGCCCGCCTCTCCTTCGGTATGCCGCTCAGCCCGACGT AGTATTAGCTCAGGAGAGAGATCTATACTATGCGAACACGTTACTAGGTG AAGGTACATCGGAGCTGGCCGAGTCACTGCTGGGAGCTCGCAGGGTGATG ATACTCGCCCCCGAACTGAGGGCGCTTGCGTCTTGTCTATACTTCGGCCT CACTAACCTTGCAGGTATGACGCGAATCCAAGTTTTGTCGTTGTAATGCT TATCACGTAACCAGTATACAATTGGCTGCTGGGTGGTAGCTGATATGCAG ACTTGCACAGATGCATGCAGAATGGAACAGCCGACGGGCAGTTGTGGACG TCAAAATGAAGACGATGTGCCGACGACACATCCGTAGGTCTAAAACCTTA TCACCACACCAGCCGTTGCTCGAGTCCCATACTTCGTTCAAGTTTCAAGT CGGCACTGGTCGATCTCGCCCACCGGATGCACGACTGGCTGCTGTTTCCG GTAGGAAAAGCTGCGGGCTAAGCCAGACAGCAACACGGAGCGGTGGAAGG CCTCAGGTTGCAATACTTGCCGTGTTCGAGGGTTCTTGGCGACTTGACGA GCGAAGCACATTAACACACACACATTGGCCAGCCGGTTAGAACAGACATT GTCAATACTAAGAACACACACACACACGCGTTAACCATGTTGCCGCACCG CGGCCGGCGAGAGACCTCCTTCGCTGATCCACCCTAATGTGCGTCATGTC ACTGCGTACCCGAAACCTCATGATGCTCAACGCCCGCAGGCAAGCAAACT CTTGGTCAGGAGTACTGCGGCATTGATCTGGTTCCCTCAGGCCGGGGCGG CGGCAGGGAGTATTCCCCTCTCCCCAGGAGGCCGTTGCAAGCGTACACGT TTCTCCGCGTGGCTGTGCCGTATCTTCAGGTGGGTGTCCGATTGGGTCTA GCCATCATGACGACGAGGTACGCTTCCGCGGTCCCCATTGTAAGGCCAAA GTGTGTTGCATGTACAATAGCAGTGACAGTCTCGTGAGATGAAAGTTAAG GCATGCTCGCATGCTCGCGCGCTTGCCGCCGAGCTGACACTAAAAGAATT ACGCACGGTTAGCAAAAATACTGTCTCGCCGCATTTGTCGTCTACTTGTC CCAACGCGCCTACATTTTTTCTCGCTCCCACACTAACCTGCACACCCGGT TGGTCGCCTGCCTTGCCATCACAGGAACGCATGCGGGAGGGCTGGCACGG GCTACGATCCCTGAGGGATCCCTTCGGGAGCGGCGGCGCGGCCGCTGCCC TGGCAGCAGCCCGCGCTAGAGCGCGCGCTCGCGTGGCTGTGGCACCGCCG GTCGGCATTGCCGTTTCTTCGGGGTCCGGCGAAACGGCAGCCGACAGGGC GGGGTCGTCGGAGGAAGAGGAGGAGAATGTGGTACCGACGGAAGCAGCGA TTGACGTTTCTTCCGGCGAAAGTGGCGGCGGGGCGCGGGCACCGCCGCTC GCGTCGCCAAGTGCCCGCTCGTCGCCGCCGCCCGTGGTGGCGTTTTTGCG GCGGGTCCTCGCCTGGGCAAGGCGAAGACGACCCGCGATGTCGAGGGTGC TGGAGTGGGCCCTGCGGTTGCACCTGGCCGCGTTTTACTTCGACGGGCGG TTCGCGAACGTGGCCATGAGGGCCGTCGGCGCGAGGCTCGCGTACGCTCG GCCGGAGCAGGAAGCGCCGCGCGCGCGCTACGCGGTGTTGGGGCTGCTCC TGCTGCTGCAGGCGGCGGCGGAGGCTGCCACGGCGAGTGCCGAGACAGCG GAGCGATGGAGGGCCACAACGAGAGCGGCGTTGTCGGGGAGGTTTCCGCG GAGCACGGAGACGGGAGCGGTCTGCGGGGAGGGAGGGGGCCCTATCGACC TTGGGGAGGGAGTTGGCGATACGGTAAGAGTGTGAAGGTTCTGTCCCTAT TGCCCGTTGTATGTTGGGCGTCGAACCTTGGGTTGTTTGTACCGATCGTG GTTGGATCGGTCTGGCCGTGGGGCTGCTTCCAAGACGAATATGTGACACA CGGCCGCCGAGCCTCGACCTTCATTTTTCCACTCGGCAACGGTACGGGAT GCGGCCAACAGCAATGACAACGCCCGAACCTCAACTCTTTTTTTTGTTTC CCCTCCCGTCCCGACACGCTCGCAGGCGCTGCCGCCGCGAGTGCCGGCCG CCACGCGAGGGAGGACCCCGGCGGACGTAGCCCTGTTTCCTCCATCTCGC CGACGCTGCTCCCTCTGCATGTCGAGCAGAGAGAACGTTGCGGCCACCCC ATGTGGACACCTGTTTTGTTGGGAGTGCATCGTGGGGTGGTGCCAGACGA ACCCGGAGTGCCCGCTGTGTAGGCAGCCCGTTGCCCCTCAGTCGATCGTG TGTCTGTACCAGTACGCGTGAGAGAATGGCACGTGGGTCGGCCGCTTTGG CGGGGGCACCAAATTGAGGCCGGTAGGCCAGCCTTTTTGTGTTCAACGTA CGTCAGCGTCGAAGAATAGCGAGGGGATTTCTCGAAAATGTATCTTTTGT CTTCATTCTGTCTGTTCGGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig627:17245..19815-

>mRNA_Ecto-sp13_S_contig627.17003.1 ID=mRNA_Ecto-sp13_S_contig627.17003.1|Name=mRNA_Ecto-sp13_S_contig627.17003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1299bp|location=Sequence derived from alignment at Ecto-sp13_S_contig627:17245..19815- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGGTGCCGGCCCGCCTCTCCTTCGGTATGCCGCTCAGCCCGACGT
AGTATTAGCTCAGGAGAGAGATCTATACTATGCGAACACGTTACTAGGTG
AAGGTACATCGGAGCTGGCCGAGTCACTGCTGGGAGCTCGCAGGGTGATG
ATACTCGCCCCCGAACTGAGGGCGCTTGCGTCTTGTCTATACTTCGGCCT
CACTAACCTTGCAGGCAAGCAAACTCTTGGTCAGGAGTACTGCGGCATTG
ATCTGGTTCCCTCAGGCCGGGGCGGCGGCAGGGAGTATTCCCCTCTCCCC
AGGAGGCCGTTGCAAGCGTACACGTTTCTCCGCGTGGCTGTGCCGTATCT
TCAGGAACGCATGCGGGAGGGCTGGCACGGGCTACGATCCCTGAGGGATC
CCTTCGGGAGCGGCGGCGCGGCCGCTGCCCTGGCAGCAGCCCGCGCTAGA
GCGCGCGCTCGCGTGGCTGTGGCACCGCCGGTCGGCATTGCCGTTTCTTC
GGGGTCCGGCGAAACGGCAGCCGACAGGGCGGGGTCGTCGGAGGAAGAGG
AGGAGAATGTGGTACCGACGGAAGCAGCGATTGACGTTTCTTCCGGCGAA
AGTGGCGGCGGGGCGCGGGCACCGCCGCTCGCGTCGCCAAGTGCCCGCTC
GTCGCCGCCGCCCGTGGTGGCGTTTTTGCGGCGGGTCCTCGCCTGGGCAA
GGCGAAGACGACCCGCGATGTCGAGGGTGCTGGAGTGGGCCCTGCGGTTG
CACCTGGCCGCGTTTTACTTCGACGGGCGGTTCGCGAACGTGGCCATGAG
GGCCGTCGGCGCGAGGCTCGCGTACGCTCGGCCGGAGCAGGAAGCGCCGC
GCGCGCGCTACGCGGTGTTGGGGCTGCTCCTGCTGCTGCAGGCGGCGGCG
GAGGCTGCCACGGCGAGTGCCGAGACAGCGGAGCGATGGAGGGCCACAAC
GAGAGCGGCGTTGTCGGGGAGGTTTCCGCGGAGCACGGAGACGGGAGCGG
TCTGCGGGGAGGGAGGGGGCCCTATCGACCTTGGGGAGGGAGTTGGCGAT
ACGGCGCTGCCGCCGCGAGTGCCGGCCGCCACGCGAGGGAGGACCCCGGC
GGACGTAGCCCTGTTTCCTCCATCTCGCCGACGCTGCTCCCTCTGCATGT
CGAGCAGAGAGAACGTTGCGGCCACCCCATGTGGACACCTGTTTTGTTGG
GAGTGCATCGTGGGGTGGTGCCAGACGAACCCGGAGTGCCCGCTGTGTAG
GCAGCCCGTTGCCCCTCAGTCGATCGTGTGTCTGTACCAGTACGCGTGA
back to top