mRNA_Ecto-sp13_S_contig62697.17000.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig62697.17000.1
Unique Name	mRNA_Ecto-sp13_S_contig62697.17000.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig62697.17000.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 1.750e-105
Identity = 145/158 (91.77%), Postives = 152/158 (96.20%), Query Frame = 1

Query:    7 HQKRSQTHTSNAVCFTLVSADTWHWRLGHLNARSLDILRKDTDTGVDYRDNLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGFFPYAFKITDDYTKIKEVYLLRKKSDTSDVLHTYNTCVAAAGGYRIETIRCDKGGENT 480
            HQK+SQTHT+NAVCFTLVSADTWH RLGHLNARSLDILRKDT TGVDYRD+LSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGG FPYA KITDDYTK+KEVYLLRKKSDT++ +HTYN CVAAAGGYRIETIRCDKGGENT
Sbjct:   23 HQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENT 180

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62697.17000.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 4.810e-101
Identity = 145/158 (91.77%), Postives = 152/158 (96.20%), Query Frame = 1

Query:    7 HQKRSQTHTSNAVCFTLVSADTWHWRLGHLNARSLDILRKDTDTGVDYRDNLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGFFPYAFKITDDYTKIKEVYLLRKKSDTSDVLHTYNTCVAAAGGYRIETIRCDKGGENT 480
            HQK+SQTHT+NAVCFTLVSADTWH RLGHLNARSLDILRKDT TGVDYRD+LSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGG FPYA KITDDYTK+KEVYLLRKKSDT++ +HTYN CVAAAGGYRIETIRCDKGGENT
Sbjct:   23 HQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENT 180

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BLAST of mRNA_Ecto-sp13_S_contig62697.17000.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 2.820e-99
Identity = 144/158 (91.14%), Postives = 152/158 (96.20%), Query Frame = 1

Query:    7 HQKRSQTHTSNAVCFTLVSADTWHWRLGHLNARSLDILRKDTDTGVDYRDNLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGFFPYAFKITDDYTKIKEVYLLRKKSDTSDVLHTYNTCVAAAGGYRIETIRCDKGGENT 480
            HQK+SQTHT+NAVCFTLVSADTWH RLGHLNARSLDILRKDT TGVDYRD+LSPCGVCQIAKHKQSPHPKQSTRE+SRPGQLVVIDNMGPVNPPAKYKGG FPYA KITDDYTK+KEVYLLRKKSDT++ +HTYN CVAAAGGYRIETIRCDKGGENT
Sbjct:  399 HQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENT 556

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BLAST of mRNA_Ecto-sp13_S_contig62697.17000.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 306 bits (784), Expect = 8.440e-99
Identity = 143/158 (90.51%), Postives = 151/158 (95.57%), Query Frame = 1

Query:    7 HQKRSQTHTSNAVCFTLVSADTWHWRLGHLNARSLDILRKDTDTGVDYRDNLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGFFPYAFKITDDYTKIKEVYLLRKKSDTSDVLHTYNTCVAAAGGYRIETIRCDKGGENT 480
            HQK+SQTHT+NAVCFTLVSADTWH RLGHLNARSLDILRKDT T VDYRD+LSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGG FPYA K+TDDYTK+KEVYLLRKKSDT++ +HTYN CVAAAGGYRIETIRCDKGGENT
Sbjct:  347 HQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENT 504

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62697.17000.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 1.110e-98
Identity = 145/158 (91.77%), Postives = 152/158 (96.20%), Query Frame = 1

Query:    7 HQKRSQTHTSNAVCFTLVSADTWHWRLGHLNARSLDILRKDTDTGVDYRDNLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGFFPYAFKITDDYTKIKEVYLLRKKSDTSDVLHTYNTCVAAAGGYRIETIRCDKGGENT 480
            HQK+SQTHT+NAVCFTLVSADTWH RLGHLNARSLDILRKDT TGVDYRD+LSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGG FPYA KITDDYTK+KEVYLLRKKSDT++ +HTYN CVAAAGGYRIETIRCDKGGENT
Sbjct:   23 HQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENT 180

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62697.17000.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 3.930e-98
Identity = 145/158 (91.77%), Postives = 152/158 (96.20%), Query Frame = 1

Query:    7 HQKRSQTHTSNAVCFTLVSADTWHWRLGHLNARSLDILRKDTDTGVDYRDNLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGFFPYAFKITDDYTKIKEVYLLRKKSDTSDVLHTYNTCVAAAGGYRIETIRCDKGGENT 480
            HQK+SQTHT+NAVCFTLVSADTWH RLGHLNARSLDILRKDT TGVDYRD+LSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGG FPYA KITDDYTK+KEVYLLRKKSDT++ +HTYN CVAAAGGYRIETIRCDKGGENT
Sbjct:   23 HQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENT 180

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62697.17000.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 1.930e-96
Identity = 145/158 (91.77%), Postives = 152/158 (96.20%), Query Frame = 1

Query:    7 HQKRSQTHTSNAVCFTLVSADTWHWRLGHLNARSLDILRKDTDTGVDYRDNLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGFFPYAFKITDDYTKIKEVYLLRKKSDTSDVLHTYNTCVAAAGGYRIETIRCDKGGENT 480
            HQK+SQTHT+NAVCFTLVSADTWH RLGHLNARSLDILRKDT TGVDYRD+LSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGG FPYA KITDDYTK+KEVYLLRKKSDT++ +HTYN CVAAAGGYRIETIRCDKGGENT
Sbjct:   23 HQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENT 180

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62697.17000.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 4.620e-96
Identity = 145/158 (91.77%), Postives = 152/158 (96.20%), Query Frame = 1

Query:    7 HQKRSQTHTSNAVCFTLVSADTWHWRLGHLNARSLDILRKDTDTGVDYRDNLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGFFPYAFKITDDYTKIKEVYLLRKKSDTSDVLHTYNTCVAAAGGYRIETIRCDKGGENT 480
            HQK+SQTHT+NAVCFTLVSADTWH RLGHLNARSLDILRKDT TGVDYRD+LSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGG FPYA KITDDYTK+KEVYLLRKKSDT++ +HTYN CVAAAGGYRIETIRCDKGGENT
Sbjct:   23 HQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENT 180

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62697.17000.1 vs. uniprot
Match: A0A6H5KMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG5_9PHAE)

HSP 1 Score: 302 bits (773), Expect = 5.400e-96
Identity = 141/158 (89.24%), Postives = 149/158 (94.30%), Query Frame = 1

Query:    7 HQKRSQTHTSNAVCFTLVSADTWHWRLGHLNARSLDILRKDTDTGVDYRDNLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGFFPYAFKITDDYTKIKEVYLLRKKSDTSDVLHTYNTCVAAAGGYRIETIRCDKGGENT 480
            HQK+SQTHT+NAVCFTLVSADTWH RLGHLNARSLDILRKDT TGVDYRD+LSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVI NMGPVNPPAKYKGG FPY  KITDDYTK+K+VYLLRKKSDT++ +HTYN CV AAGGYRIETIRCDKGGENT
Sbjct:  312 HQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIGNMGPVNPPAKYKGGSFPYVRKITDDYTKMKKVYLLRKKSDTTEAVHTYNMCVVAAGGYRIETIRCDKGGENT 469

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62697.17000.1 vs. uniprot
Match: A0A6H5JWA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA3_9PHAE)

HSP 1 Score: 296 bits (758), Expect = 3.970e-95
Identity = 140/158 (88.61%), Postives = 148/158 (93.67%), Query Frame = 1

Query:    7 HQKRSQTHTSNAVCFTLVSADTWHWRLGHLNARSLDILRKDTDTGVDYRDNLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGFFPYAFKITDDYTKIKEVYLLRKKSDTSDVLHTYNTCVAAAGGYRIETIRCDKGGENT 480
            HQK+SQTHT+NAVCFTLVSADTWH RLGHLNARSLDILRKDT TGVDYRD+LSPCGVCQIAKHKQSPH KQSTRELSRPGQLVVI NMGPVNPPAK KGG FPYA KITDDYTK+K+VYLLRKKSDT++ +HTYN CVAA GGYRIETIRCDKGGENT
Sbjct:  305 HQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHLKQSTRELSRPGQLVVIGNMGPVNPPAKNKGGSFPYACKITDDYTKMKKVYLLRKKSDTTEAVHTYNMCVAAKGGYRIETIRCDKGGENT 462

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig62697.17000.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig62697.17000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KZ34_9PHAE	1.750e-105	91.77	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5KCM0_9PHAE	4.810e-101	91.77	Integrase catalytic domain-containing protein n=5 ...	[more]
A0A6H5KT84_9PHAE	2.820e-99	91.14	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KVF6_9PHAE	8.440e-99	90.51	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K500_9PHAE	1.110e-98	91.77	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K1R7_9PHAE	3.930e-98	91.77	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5JJR8_9PHAE	1.930e-96	91.77	Integrase catalytic domain-containing protein n=11...	[more]
A0A6H5KCT3_9PHAE	4.620e-96	91.77	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KMG5_9PHAE	5.400e-96	89.24	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JWA3_9PHAE	3.970e-95	88.61	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig62697	contig	Ecto-sp13_S_contig62697:310..789 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Viridiplantae
Stop	0
Start	1
Seed ortholog score	75.5
Seed ortholog evalue	2.5e-11
Seed eggNOG ortholog	102107.XP_008237766.1
Model size	480
Hectar predicted targeting category	other localisation
Exons	1
EggNOG free text desc.	NB-ARC domain
EggNOG OGs	3894G@33090,3GY0K@35493,COG2801@1,KOG0017@2759
Cds size	480
COG Functional cat.	L
Best tax level	Streptophyta
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463870.8271778-CDS-Ecto-sp13_S_contig62697:309..789	1681463870.8271778-CDS-Ecto-sp13_S_contig62697:309..789	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig62697 310..789 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig62697.17000.1	prot_Ecto-sp13_S_contig62697.17000.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig62697 310..789 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig62697:310..789+
coding sequence from alignment at Ecto-sp13_S_contig62697:310..789+

protein sequence of mRNA_Ecto-sp13_S_contig62697.17000.1

>prot_Ecto-sp13_S_contig62697.17000.1 ID=prot_Ecto-sp13_S_contig62697.17000.1|Name=mRNA_Ecto-sp13_S_contig62697.17000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp
MTHQKRSQTHTSNAVCFTLVSADTWHWRLGHLNARSLDILRKDTDTGVDY
RDNLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYK
GGFFPYAFKITDDYTKIKEVYLLRKKSDTSDVLHTYNTCVAAAGGYRIET
IRCDKGGENT

mRNA from alignment at Ecto-sp13_S_contig62697:310..789+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig62697.17000.1 ID=mRNA_Ecto-sp13_S_contig62697.17000.1|Name=mRNA_Ecto-sp13_S_contig62697.17000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62697:310..789+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCCACCAGAAGCGGTCACAGACCCACACGTCGAACGCCGTCTGCTT
TACGCTAGTCAGCGCGGACACCTGGCACTGGAGACTTGGACATCTCAATG
CTCGGAGCCTGGACATCCTTCGGAAGGACACGGATACCGGGGTGGACTAT
CGCGACAATCTCTCCCCTTGCGGGGTCTGCCAGATCGCGAAACACAAGCA
GTCCCCCCACCCGAAGCAATCGACTCGCGAACTATCACGGCCTGGACAGC
TTGTGGTTATCGACAACATGGGGCCTGTTAATCCACCTGCGAAATATAAA
GGAGGCTTCTTCCCGTACGCGTTCAAGATCACCGACGACTACACGAAGAT
CAAAGAAGTGTACCTGCTTCGCAAGAAATCTGACACGTCCGATGTGTTGC
ACACGTACAACACGTGCGTCGCAGCGGCAGGAGGCTACCGGATCGAGACC
ATCCGCTGCGATAAGGGAGGCGAGAACACC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62697:310..789+

>mRNA_Ecto-sp13_S_contig62697.17000.1 ID=mRNA_Ecto-sp13_S_contig62697.17000.1|Name=mRNA_Ecto-sp13_S_contig62697.17000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62697:310..789+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCCACCAGAAGCGGTCACAGACCCACACGTCGAACGCCGTCTGCTT
TACGCTAGTCAGCGCGGACACCTGGCACTGGAGACTTGGACATCTCAATG
CTCGGAGCCTGGACATCCTTCGGAAGGACACGGATACCGGGGTGGACTAT
CGCGACAATCTCTCCCCTTGCGGGGTCTGCCAGATCGCGAAACACAAGCA
GTCCCCCCACCCGAAGCAATCGACTCGCGAACTATCACGGCCTGGACAGC
TTGTGGTTATCGACAACATGGGGCCTGTTAATCCACCTGCGAAATATAAA
GGAGGCTTCTTCCCGTACGCGTTCAAGATCACCGACGACTACACGAAGAT
CAAAGAAGTGTACCTGCTTCGCAAGAAATCTGACACGTCCGATGTGTTGC
ACACGTACAACACGTGCGTCGCAGCGGCAGGAGGCTACCGGATCGAGACC
ATCCGCTGCGATAAGGGAGGCGAGAACACC