mRNA_Ecto-sp13_S_contig62662.16996.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62662.16996.1
Unique NamemRNA_Ecto-sp13_S_contig62662.16996.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig62662.16996.1 vs. uniprot
Match: D8LP60_ECTSI (EsV-1-155 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP60_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.170e-38
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 1 
Query:    1 RLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESFKRLKSNLKLEKVHAKTPALYIQEVEARVLLDTIT 222
            RLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEES KRLKSNLKLEK HAKTPALYIQEVEARVLLDTIT
Sbjct:  223 RLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESLKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTIT 296
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BLAST of mRNA_Ecto-sp13_S_contig62662.16996.1 vs. uniprot
Match: A0A6H5K772_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K772_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 8.990e-36
Identity = 70/74 (94.59%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:    1 RLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESFKRLKSNLKLEKVHAKTPALYIQEVEARVLLDTIT 222
            RLLKYFI GKTYVCLTND SLSRRDIK MYASRWRVEESFKRLKSNLKLEK HAKTPALYIQEVEARVLLDTIT
Sbjct:  238 RLLKYFIDGKTYVCLTNDPSLSRRDIKTMYASRWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTIT 311
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BLAST of mRNA_Ecto-sp13_S_contig62662.16996.1 vs. uniprot
Match: D8LP47_ECTSI (EsV-1-170 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP47_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 1.360e-35
Identity = 67/74 (90.54%), Postives = 69/74 (93.24%), Query Frame = 1 
Query:    1 RLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESFKRLKSNLKLEKVHAKTPALYIQEVEARVLLDTIT 222
            RLLKYFI GKTYVCLTND SLSRRDIK MYASRWRVEESFKRLKSNL+LEK HA+TP LYIQEVEARVLLDTIT
Sbjct:  223 RLLKYFIDGKTYVCLTNDPSLSRRDIKTMYASRWRVEESFKRLKSNLRLEKAHARTPDLYIQEVEARVLLDTIT 296
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BLAST of mRNA_Ecto-sp13_S_contig62662.16996.1 vs. uniprot
Match: A0A6H5JA56_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 8.530e-35
Identity = 69/74 (93.24%), Postives = 69/74 (93.24%), Query Frame = 1 
Query:    1 RLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESFKRLKSNLKLEKVHAKTPALYIQEVEARVLLDTIT 222
            RLLKYFI GKTYVCLTND SLSRRDIK MYA RWRVEESFKRLKSNLKLEK HAKTPALYIQEVEARVLLDTIT
Sbjct:  207 RLLKYFIKGKTYVCLTNDPSLSRRDIKTMYAWRWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTIT 280
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BLAST of mRNA_Ecto-sp13_S_contig62662.16996.1 vs. uniprot
Match: Q8QNB6_ESV1K (EsV-1-170 n=2 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB6_ESV1K)

HSP 1 Score: 124 bits (311), Expect = 1.710e-32
Identity = 64/74 (86.49%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:    1 RLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESFKRLKSNLKLEKVHAKTPALYIQEVEARVLLDTIT 222
            RLLKYFI GKTYVCLT D SLSR  IK MYASRWRVEESFKRLKSNL+LEK HA+TP LYIQEVEARVLLDTIT
Sbjct:  223 RLLKYFIDGKTYVCLTTDPSLSRLKIKTMYASRWRVEESFKRLKSNLRLEKAHARTPDLYIQEVEARVLLDTIT 296
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BLAST of mRNA_Ecto-sp13_S_contig62662.16996.1 vs. uniprot
Match: A0A6H5K0K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K9_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 4.610e-29
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:    1 RLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESFKRLKSNLKLEKVHAKTPALYIQEVEARVLLDTIT 222
            RL+KY I+GKTYVCLTND +LSRRDIK +YASRWR E+S  RLKSN++LEK HA+TP LYIQEVEARVLLDTIT
Sbjct:  153 RLVKYSINGKTYVCLTNDPTLSRRDIKAIYASRWRGEQSL-RLKSNVRLEKAHARTPDLYIQEVEARVLLDTIT 225
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62662.16996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LP60_ECTSI1.170e-3897.30EsV-1-155 (Partial) (Fragment) n=1 Tax=Ectocarpus ... [more]
A0A6H5K772_9PHAE8.990e-3694.59DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
D8LP47_ECTSI1.360e-3590.54EsV-1-170 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JA56_9PHAE8.530e-3593.24DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
Q8QNB6_ESV1K1.710e-3286.49EsV-1-170 n=2 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5K0K9_9PHAE4.610e-2978.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62662contigEcto-sp13_S_contig62662:571..792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size222
Hectar predicted targeting categoryother localisation
Exons1
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463870.4566076-CDS-Ecto-sp13_S_contig62662:570..7921681463870.4566076-CDS-Ecto-sp13_S_contig62662:570..792Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62662 571..792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62662.16996.1prot_Ecto-sp13_S_contig62662.16996.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62662 571..792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62662.16996.1

>prot_Ecto-sp13_S_contig62662.16996.1 ID=prot_Ecto-sp13_S_contig62662.16996.1|Name=mRNA_Ecto-sp13_S_contig62662.16996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
RLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESFKRLKSNLKLE
KVHAKTPALYIQEVEARVLLDTIT
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mRNA from alignment at Ecto-sp13_S_contig62662:571..792-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62662.16996.1 ID=mRNA_Ecto-sp13_S_contig62662.16996.1|Name=mRNA_Ecto-sp13_S_contig62662.16996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62662:571..792- (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCTCTTGAAGTATTTTATTTCTGGTAAAACATATGTTTGCCTGACGAA
CGATCTATCGCTATCTCGGAGGGATATCAAGGTCATGTACGCGTCGAGGT
GGCGGGTGGAGGAATCCTTCAAACGATTGAAATCAAACCTCAAACTTGAG
AAAGTACATGCCAAAACTCCGGCTCTTTATATTCAGGAGGTAGAAGCGCG
GGTCTTGTTAGACACAATCACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62662:571..792-

>mRNA_Ecto-sp13_S_contig62662.16996.1 ID=mRNA_Ecto-sp13_S_contig62662.16996.1|Name=mRNA_Ecto-sp13_S_contig62662.16996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62662:571..792- (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCTCTTGAAGTATTTTATTTCTGGTAAAACATATGTTTGCCTGACGAA
CGATCTATCGCTATCTCGGAGGGATATCAAGGTCATGTACGCGTCGAGGT
GGCGGGTGGAGGAATCCTTCAAACGATTGAAATCAAACCTCAAACTTGAG
AAAGTACATGCCAAAACTCCGGCTCTTTATATTCAGGAGGTAGAAGCGCG
GGTCTTGTTAGACACAATCACA
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