mRNA_Ecto-sp13_S_contig6265.16994.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6265.16994.1
Unique NamemRNA_Ecto-sp13_S_contig6265.16994.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6265.16994.1 vs. uniprot
Match: D8LDW6_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW6_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 1.990e-86
Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 1
Query:    1 PVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPTEAIQ 381
            PVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELP+EAIQ
Sbjct:   54 PVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPSEAIQ 180          
BLAST of mRNA_Ecto-sp13_S_contig6265.16994.1 vs. uniprot
Match: A0A6H5JV79_9PHAE (Cupin type-1 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV79_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 1.000e-71
Identity = 105/126 (83.33%), Postives = 113/126 (89.68%), Query Frame = 1
Query:    4 VDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPTEAIQ 381
            VDGFQ+R A + Q+PALDGQGI+M LVNLD C INLPHIHPRATEM YVI GE LRVAFVEENGGEGAVVNDL+QGDV FFPQGLIHY+QNL CEP TFLAALNN+DPGA+TITTRFFELP EAIQ
Sbjct:   54 VDGFQLRTAVVNQLPALDGQGISMGLVNLDPCAINLPHIHPRATEMVYVIKGEQLRVAFVEENGGEGAVVNDLAQGDVAFFPQGLIHYQQNLDCEPATFLAALNNEDPGAITITTRFFELPLEAIQ 179          
BLAST of mRNA_Ecto-sp13_S_contig6265.16994.1 vs. uniprot
Match: A0A507FDZ0_9FUNG (Cupin type-1 domain-containing protein n=2 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FDZ0_9FUNG)

HSP 1 Score: 140 bits (353), Expect = 5.390e-39
Identity = 68/128 (53.12%), Postives = 87/128 (67.97%), Query Frame = 1
Query:   10 GFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPTEAIQVRAG 393
            G  +    LG +PAL  QG+AM L+NL+ C  NLPH+HPRA+E  YVI G +++V F+EENG +  +VNDL QG  TF PQG IHY+ NLGCE    +AA NN+DPG +TI  +FF+LP  AI    G
Sbjct:   66 GGSLAKMNLGSMPALARQGLAMVLINLNPCGANLPHVHPRASEAIYVIQG-NVQVGFIEENGAK-VIVNDLVQGQATFIPQGSIHYQVNLGCEQAVMIAANNNEDPGTLTIPAQFFKLPDGAIAASLG 191          
BLAST of mRNA_Ecto-sp13_S_contig6265.16994.1 vs. uniprot
Match: A0A165BNY0_EXIGL (RmlC-like cupin n=2 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165BNY0_EXIGL)

HSP 1 Score: 126 bits (317), Expect = 7.310e-34
Identity = 66/128 (51.56%), Postives = 77/128 (60.16%), Query Frame = 1
Query:   10 GFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPTEAIQVRAG 393
            G     A     PAL G G+AM L  LDAC+IN PH HPRATE   V+NG  LR  F+ ENG    ++ND+     T FPQG IH+E NLGCEPV F+AA NN+DPG + I  RFF LP   I    G
Sbjct:   45 GGHTTHAARDTFPALVGTGMAMTLGFLDACSINTPHTHPRATEFNLVMNGT-LRAGFLAENGAR-FIMNDVPALSATIFPQGAIHFEANLGCEPVIFIAAFNNEDPGVLQIAQRFFGLPGSVIGASLG 170          
BLAST of mRNA_Ecto-sp13_S_contig6265.16994.1 vs. uniprot
Match: A0A0G4EJ88_VITBC (Cupin type-1 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EJ88_VITBC)

HSP 1 Score: 126 bits (317), Expect = 6.860e-33
Identity = 61/129 (47.29%), Postives = 81/129 (62.79%), Query Frame = 1
Query:   10 GFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPTEAIQVRAGI 396
            G  +  A++ Q PAL G G++  LV+L  C+IN PH+HPRATE+ Y+I G  + V F EENGG   V ND+ +GD  FFP  LIH++ N  CEP  F+A LN+DD G  TI   FF LP + +    G+
Sbjct:  162 GGAVTGASVSQWPALSGHGLSHTLVDLAPCSINTPHVHPRATEIIYIIKGR-VSVGFAEENGGR-IVTNDVKEGDTAFFPHTLIHWQFNPTCEPAQFIATLNSDDGGVQTIAQAFFGLPDDVLATALGV 288          
BLAST of mRNA_Ecto-sp13_S_contig6265.16994.1 vs. uniprot
Match: A0A0L0G050_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G050_9EUKA)

HSP 1 Score: 125 bits (313), Expect = 4.450e-32
Identity = 62/129 (48.06%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    7 DGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPTEAIQVRAG 393
            +G  I+   L   PAL    +A     ++ C INLPHIHPRATE+ Y+++G  + V FV ENGG GA++N+LS    TFFPQGLIH++QN+ CEP  F+++LN  DPG +T+  + F LPTEA+    G
Sbjct:  128 NGGTIQPIELAAHPALVLANMAQTKFTIEPCGINLPHIHPRATELVYMVSGA-VTVGFVGENGG-GAIMNNLSADMSTFFPQGLIHFQQNMECEPAVFVSSLNGVDPGTITLPEQLFALPTEALSAAFG 254          
BLAST of mRNA_Ecto-sp13_S_contig6265.16994.1 vs. uniprot
Match: A0A814L9M3_ADIRI (Hypothetical protein n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A814L9M3_ADIRI)

HSP 1 Score: 122 bits (305), Expect = 9.090e-32
Identity = 60/129 (46.51%), Postives = 80/129 (62.02%), Query Frame = 1
Query:   10 GFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFF-ELPTEAIQVRAG 393
            G +  +AT    P L G G+AM L  L  C INLPH HPRATE+ Y ++G H +V F +ENG    ++N++ +  V  FP+G IH+EQNL CEP TF+AA N++DPG +TI   +F  LP   I    G
Sbjct:   93 GGRTVSATASNFPGLIGHGVAMTLGFLGPCGINLPHTHPRATEINYSVDG-HFQVGFYQENGA-AFIMNEIQKNQVAVFPKGAIHFEQNLNCEPATFVAAFNSEDPGVLTIANAYFGALPATVIGANLG 219          
BLAST of mRNA_Ecto-sp13_S_contig6265.16994.1 vs. uniprot
Match: L8H6S8_ACACA (Spherulin, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H6S8_ACACA)

HSP 1 Score: 120 bits (302), Expect = 1.820e-31
Identity = 61/128 (47.66%), Postives = 75/128 (58.59%), Query Frame = 1
Query:   10 GFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPTEAIQVRAG 393
            G +  AAT    PAL G G+AM +  L  C INLPH HPRATE  +V +G      F  ENG E  + N ++QG    FPQG IH+EQN+ CEP  F+A  NN+DPG  TI + FF LPT  +    G
Sbjct:   77 GGKTVAATARNFPALIGNGVAMTVGYLGPCGINLPHTHPRATEFNFVASGA-FEAGFFMENGNEFVMTN-VTQGMAVVFPQGAIHFEQNMNCEPAVFVAGFNNEDPGVSTIASNFFGLPTAIVGASLG 202          
BLAST of mRNA_Ecto-sp13_S_contig6265.16994.1 vs. uniprot
Match: A0A433DF28_9FUNG (RmlC-like cupin n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DF28_9FUNG)

HSP 1 Score: 120 bits (301), Expect = 2.390e-31
Identity = 61/125 (48.80%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    7 DGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFE-LPTEAI 378
            DG +  AAT    PAL G  IAM +  +  C+INLPHIHPRATE+ ++  G+     F EENG    +VN L +G+VT FP G IH+EQNL CEP  F+AA N++DPG  TI + F   LP + +
Sbjct:   75 DGGRTVAATAANFPALIGHNIAMTVGFIGPCSINLPHIHPRATEINFIAQGK-FEAGFFEENGAR-FIVNTLHKGEVTVFPMGAIHFEQNLNCEPAVFVAAFNSEDPGVSTIGSNFIGGLPADIV 197          
BLAST of mRNA_Ecto-sp13_S_contig6265.16994.1 vs. uniprot
Match: A0A8H7DGE6_9AGAR (Cupin type-1 domain-containing protein n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H7DGE6_9AGAR)

HSP 1 Score: 120 bits (302), Expect = 2.550e-31
Identity = 59/122 (48.36%), Postives = 76/122 (62.30%), Query Frame = 1
Query:   28 ATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPTEAIQVRAG 393
            AT G  PA+ G GIAM +  L  C IN PH HPRATE+ Y +NG  LR   + ENG    V+N+L  G +T FPQG +H+E N GCEP  F+A  N++DPG +++  RFF LP + I    G
Sbjct:   74 ATSGTFPAVVGNGIAMTIGFLGPCGINTPHTHPRATEINYSVNGT-LRAGLLTENGAR-FVMNELPPGSMTVFPQGAVHFEMNDGCEPAMFVAGFNSEDPGVLSVAQRFFGLPIDIIGATMG 193          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6265.16994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDW6_ECTSI1.990e-8699.21Cupin-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JV79_9PHAE1.000e-7183.33Cupin type-1 domain-containing protein n=6 Tax=Ect... [more]
A0A507FDZ0_9FUNG5.390e-3953.13Cupin type-1 domain-containing protein n=2 Tax=Chy... [more]
A0A165BNY0_EXIGL7.310e-3451.56RmlC-like cupin n=2 Tax=Exidia glandulosa HHB12029... [more]
A0A0G4EJ88_VITBC6.860e-3347.29Cupin type-1 domain-containing protein n=2 Tax=Vit... [more]
A0A0L0G050_9EUKA4.450e-3248.06Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
A0A814L9M3_ADIRI9.090e-3246.51Hypothetical protein n=3 Tax=Adineta ricciae TaxID... [more]
L8H6S8_ACACA1.820e-3147.66Spherulin, putative n=1 Tax=Acanthamoeba castellan... [more]
A0A433DF28_9FUNG2.390e-3148.80RmlC-like cupin n=2 Tax=Jimgerdemannia flammicoron... [more]
A0A8H7DGE6_9AGAR2.550e-3148.36Cupin type-1 domain-containing protein n=1 Tax=Myc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6265contigEcto-sp13_S_contig6265:4964..6146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score260.4
Seed ortholog evalue4.6e-67
Seed eggNOG ortholog2880.D8LDW6
Model size396
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.nutrient reservoir activity
EggNOG OGs2BYKQ@1,2QQ4A@2759
Cds size396
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463870.173694-CDS-Ecto-sp13_S_contig6265:4963..52211681463870.173694-CDS-Ecto-sp13_S_contig6265:4963..5221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6265 4964..5221 -
1681463870.1842678-CDS-Ecto-sp13_S_contig6265:6008..61461681463870.1842678-CDS-Ecto-sp13_S_contig6265:6008..6146Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6265 6009..6146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6265.16994.1prot_Ecto-sp13_S_contig6265.16994.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6265 4964..6146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6265.16994.1

>prot_Ecto-sp13_S_contig6265.16994.1 ID=prot_Ecto-sp13_S_contig6265.16994.1|Name=mRNA_Ecto-sp13_S_contig6265.16994.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
PVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYV
INGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTF
LAALNNDDPGAVTITTRFFELPTEAIQVRAGI
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mRNA from alignment at Ecto-sp13_S_contig6265:4964..6146-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6265.16994.1 ID=mRNA_Ecto-sp13_S_contig6265.16994.1|Name=mRNA_Ecto-sp13_S_contig6265.16994.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6265:4964..6146- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGTGGACGGCTTCCAGATCCGTGCGGCTACCCTCGGCCAGATCCCTGC TCTGGATGGGCAAGGTATTGCCATGGCCCTCGTCAACCTCGACGCGTGCA CCATCAACCTGCCTCACATCCACCCGCGTGCCACAGAGGTGATTGATTCT TCATGGAATCTTGAATGTGCTGGCTTTCTTTGCCGTGGCGTATCTTTCAA CTCCCCGGGGACACCGCCCGTGTGGCCCATGTCCCAAGATGGATGTATGT GGTGCTGTCAAAAGCAAGCCAAGAATTCGACTGGTGAAGCATCGTTGAAT TCTCTGTGCCACGAACCGATGGCGGACTCGACTACTGCAACACGTCGATG TTGATGCCAAAAAGCTACAATTCGTTTTTTCTCCCGCAAGAAGCGTTGTG GTGTACAACACAATCACGTAACGCGGAAGTACCGTCATGGTGCGTGTTCA TATCTTACCATGGACAGGCTTCATATCGCACCCCATAACATAAATGAGTG CTACAACGCCGATATCGGTGCGAGAATGCAACTTATTTTTTTCATCGCAA CCCCGGTGCCATGAGACCGATCAGTGCGATGTGAATGGAAAAAAAACAGT GGACTTTCTCATACATATTTGTGCGCATCGACTGTACGATATACAACGCA GCCGTTCGTTACATACGGTGAAAACGTGGCGTGGACGGTGACGATACCAT GCGGAAGTAAACAAAAAGATACGCTGCTATCGCCTCGATACCGGTGCGGA TGTGCATTTGAACTACGCCGGTTTTGATTTTGCTGCGCATCCCGGTGACG AAAACCGATGGGTGCAAAATCACCGATGAGTACGATAAACAATACAAGGT AAGTAAAGTTACATTGTACTCGAAGATCCACGAGTGTTGAGCCCTAACCG TTGAACTCAAACTCACTCTTCACAGATGCAGTACGTCATCAACGGCGAGC ACCTCCGGGTGGCGTTCGTCGAGGAGAACGGCGGCGAGGGGGCCGTGGTC AACGACCTTTCCCAGGGAGATGTGACGTTCTTCCCGCAGGGACTCATCCA CTACGAGCAGAACCTTGGCTGTGAGCCGGTGACGTTTCTGGCCGCGCTGA ACAACGATGACCCCGGTGCCGTTACGATCACGACTCGCTTCTTCGAGCTG CCAACGGAGGCCATCCAGGTGCGTGCTGGGATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6265:4964..6146-

>mRNA_Ecto-sp13_S_contig6265.16994.1 ID=mRNA_Ecto-sp13_S_contig6265.16994.1|Name=mRNA_Ecto-sp13_S_contig6265.16994.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6265:4964..6146- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGTGGACGGCTTCCAGATCCGTGCGGCTACCCTCGGCCAGATCCCTGC
TCTGGATGGGCAAGGTATTGCCATGGCCCTCGTCAACCTCGACGCGTGCA
CCATCAACCTGCCTCACATCCACCCGCGTGCCACAGAGATGCAGTACGTC
ATCAACGGCGAGCACCTCCGGGTGGCGTTCGTCGAGGAGAACGGCGGCGA
GGGGGCCGTGGTCAACGACCTTTCCCAGGGAGATGTGACGTTCTTCCCGC
AGGGACTCATCCACTACGAGCAGAACCTTGGCTGTGAGCCGGTGACGTTT
CTGGCCGCGCTGAACAACGATGACCCCGGTGCCGTTACGATCACGACTCG
CTTCTTCGAGCTGCCAACGGAGGCCATCCAGGTGCGTGCTGGGATC
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