mRNA_Ecto-sp13_S_contig62636.16992.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62636.16992.1
Unique NamemRNA_Ecto-sp13_S_contig62636.16992.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig62636.16992.1 vs. uniprot
Match: D8LNW5_ECTSI (Proline--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW5_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.630e-19
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 NKSLDKLKELGIEGALFEHHKAMTVPEQEMALRGVTGDKTKNLFL 135
            NKSLDKLKELGIEGALFEHH+AMTVPEQEMALRGV+GDKTKNLFL
Sbjct:  191 NKSLDKLKELGIEGALFEHHRAMTVPEQEMALRGVSGDKTKNLFL 235
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62636.16992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNW5_ECTSI1.630e-1995.56Proline--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62636contigEcto-sp13_S_contig62636:652..786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score90.1
Seed ortholog evalue2.8e-16
Seed eggNOG ortholog2880.D8LNW5
Model size135
KEGG rclassRC00004,RC00049,RC00055,RC00069,RC00296,RC00523,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799,ko:K01120,ko:K01194,ko:K01874,ko:K01881,ko:K15437,ko:K22119
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR00010,R00191,R01234,R03522,R03659,R03661,R04773,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00230,ko00450,ko00480,ko00500,ko00970,ko00980,ko00982,ko00983,ko01100,ko01524,ko05200,ko05204,ko05225,ko05418,map00230,map00450,map00480,map00500,map00970,map00980,map00982,map00983,map01100,map01524,map05200,map05204,map05225,map05418
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.synthetase
EggNOG OGsCOG0442@1,COG0625@1,KOG0867@2759,KOG4163@2759
EC2.5.1.18,3.1.4.17,3.2.1.28,6.1.1.10,6.1.1.15
Cds size135
COG Functional cat.J
CAZyGH37
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00537,ko01000,ko01007,ko02000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463870.0929816-CDS-Ecto-sp13_S_contig62636:651..7861681463870.0929816-CDS-Ecto-sp13_S_contig62636:651..786Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62636 652..786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62636.16992.1prot_Ecto-sp13_S_contig62636.16992.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62636 652..786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62636.16992.1

>prot_Ecto-sp13_S_contig62636.16992.1 ID=prot_Ecto-sp13_S_contig62636.16992.1|Name=mRNA_Ecto-sp13_S_contig62636.16992.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
NKSLDKLKELGIEGALFEHHKAMTVPEQEMALRGVTGDKTKNLFL
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mRNA from alignment at Ecto-sp13_S_contig62636:652..786+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62636.16992.1 ID=mRNA_Ecto-sp13_S_contig62636.16992.1|Name=mRNA_Ecto-sp13_S_contig62636.16992.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62636:652..786+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACAAGTCTTTGGACAAGCTGAAGGAGCTGGGGATCGAGGGGGCGCTGTT
CGAGCACCACAAGGCCATGACGGTGCCGGAGCAGGAGATGGCTCTGCGAG
GCGTCACAGGGGACAAGACTAAGAACTTGTTCCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62636:652..786+

>mRNA_Ecto-sp13_S_contig62636.16992.1 ID=mRNA_Ecto-sp13_S_contig62636.16992.1|Name=mRNA_Ecto-sp13_S_contig62636.16992.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62636:652..786+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACAAGTCTTTGGACAAGCTGAAGGAGCTGGGGATCGAGGGGGCGCTGTT
CGAGCACCACAAGGCCATGACGGTGCCGGAGCAGGAGATGGCTCTGCGAG
GCGTCACAGGGGACAAGACTAAGAACTTGTTCCTC
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