mRNA_Ecto-sp13_S_contig62582.16984.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62582.16984.1
Unique NamemRNA_Ecto-sp13_S_contig62582.16984.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 1.110e-36
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1
Query:   13 DVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSMSAPCVVDG 207
            DVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLS++APCVVDG
Sbjct: 2547 DVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSLAAPCVVDG 2611          
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Match: D7FJ69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ69_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 4.610e-34
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 1
Query:   13 DVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSMSAPCVVD 204
            DVCSNGIPG+QSG +CCLAECG CGGSGCAELGGGLGEHNCC+ EIE+FGELCS+ + APCVVD
Sbjct:   33 DVCSNGIPGVQSGVSCCLAECGGCGGSGCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVVD 96          
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.030e-33
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1
Query:   10 ADVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSMSAPCVVDG 207
            +D+CSNGIPGIQSGNACCLAECG CGGSGCA+LGGGLGE NCCQSEIEDFGELCS+ M+APCVVDG
Sbjct: 1874 SDMCSNGIPGIQSGNACCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDG 1939          
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Match: A0A6H5JII7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII7_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 5.020e-32
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 1
Query:   13 DVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSMSAPCVVDG 207
            DVCSNGIPG+QSG +CCLAECG CGGSGCAELGGGLGEHNCC+ EIE+FGELCS+ + APCV+DG
Sbjct:  463 DVCSNGIPGVQSGVSCCLAECGGCGGSGCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVIDG 527          
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 5.470e-29
Identity = 50/66 (75.76%), Postives = 58/66 (87.88%), Query Frame = 1
Query:   13 DVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSMSAPCVVDGE 210
            DVCSNGIPGIQSG  CCLAECG CGG GCAE GGGLG+ NCCQ  IE++GELCS++++APC+VDGE
Sbjct:  728 DVCSNGIPGIQSGITCCLAECGECGGPGCAEFGGGLGQDNCCQGRIEEYGELCSVTLAAPCIVDGE 793          
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Match: A0A6H5K6S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6S4_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 4.990e-27
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 1
Query:   13 DVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSMSAPCVVDGE 210
            D+CSNG  GIQSGNACCLAECG CGG GC E GGGLG   CC+S+IE++GELCS++++APC +DGE
Sbjct:  444 DMCSNGFSGIQSGNACCLAECGECGGHGCGEFGGGLGADKCCESDIEEYGELCSIALAAPCYIDGE 509          
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.160e-24
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 1
Query:   13 DVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSMSAPCVVD 204
            DVCSNG PGIQSG++CC AEC ACGG GCAE GGGLGE NCC   IE++GELCS +++APC VD
Sbjct:  540 DVCSNGFPGIQSGDSCCHAECEACGGFGCAEFGGGLGEDNCCAVRIEEYGELCSTALAAPCYVD 603          
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Match: D7FZM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM0_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 7.630e-14
Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = 1
Query:   19 CSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSMSAPCVV 201
            CSNG+PG Q G ACCL  CG CGG GC  + G  G  +CC S I +   +C   + APC++
Sbjct:    7 CSNGLPGYQDGQACCLMNCGLCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCII 67          
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 3.600e-13
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   10 ADVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSMSAPCVVDGE 210
            A  CSNG PGI+   ACC+++CG CGGSGC+    GL   +CC   I   G  CS +  APC +DG+
Sbjct:   18 AQKCSNGFPGIEKSGACCVSDCGTCGGSGCSSRESGLTGDDCCTKNILKQGAPCSATGHAPCFLDGD 84          
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Match: D7FRL2_ECTSI (Endo alpha-1,4 polygalactosaminidase precusor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL2_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 3.640e-13
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   37 GIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSMSAPCVVDGE 210
            GI +G ACC  EC +CGG GC+  GGGL   +CC S IE+ G LCS++  APC VDGE
Sbjct:   77 GILNGQACCRHECRSCGGVGCSNRGGGLTGDDCCVSNIEEHGALCSVAGQAPCFVDGE 134          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FJ68_ECTSI1.110e-3696.92WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJ69_ECTSI4.610e-3482.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG29_9PHAE1.030e-3387.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JII7_9PHAE5.020e-3281.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ37_9PHAE5.470e-2975.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6S4_9PHAE4.990e-2769.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRE8_ECTSI1.160e-2471.88EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FZM0_ECTSI7.630e-1447.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN0_ECTSI3.600e-1347.76Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7FRL2_ECTSI3.640e-1356.90Endo alpha-1,4 polygalactosaminidase precusor n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62582contigEcto-sp13_S_contig62582:354..572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score141.0
Seed ortholog evalue2.2e-31
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
Model size219
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
EC2.7.7.19
Cds size213
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463869.5079694-UTR-Ecto-sp13_S_contig62582:353..3591681463869.5079694-UTR-Ecto-sp13_S_contig62582:353..359Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig62582 354..359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463869.521993-CDS-Ecto-sp13_S_contig62582:359..5721681463869.521993-CDS-Ecto-sp13_S_contig62582:359..572Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62582 360..572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62582.16984.1prot_Ecto-sp13_S_contig62582.16984.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62582 360..572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62582.16984.1

>prot_Ecto-sp13_S_contig62582.16984.1 ID=prot_Ecto-sp13_S_contig62582.16984.1|Name=mRNA_Ecto-sp13_S_contig62582.16984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp
MADVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIED
FGELCSLSMSAPCVVDGEKRR
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mRNA from alignment at Ecto-sp13_S_contig62582:354..572+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62582.16984.1 ID=mRNA_Ecto-sp13_S_contig62582.16984.1|Name=mRNA_Ecto-sp13_S_contig62582.16984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62582:354..572+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCTTATGGCAGACGTGTGCTCCAACGGTATCCCCGGTATCCAGTCAGG AAACGCTTGCTGTCTCGCGGAGTGCGGTGCATGCGGCGGATCTGGCTGCG CTGAACTTGGCGGCGGCCTCGGGGAGCACAACTGCTGCCAGAGCGAGATC GAAGACTTCGGCGAGCTGTGCTCTCTCTCGATGTCAGCCCCGTGTGTCGT AGACGGTGAGAAACGACGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62582:354..572+

>mRNA_Ecto-sp13_S_contig62582.16984.1 ID=mRNA_Ecto-sp13_S_contig62582.16984.1|Name=mRNA_Ecto-sp13_S_contig62582.16984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62582:354..572+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGACGTGTGCTCCAACGGTATCCCCGGTATCCAGTCAGGAAACGC
TTGCTGTCTCGCGGAGTGCGGTGCATGCGGCGGATCTGGCTGCGCTGAAC
TTGGCGGCGGCCTCGGGGAGCACAACTGCTGCCAGAGCGAGATCGAAGAC
TTCGGCGAGCTGTGCTCTCTCTCGATGTCAGCCCCGTGTGTCGTAGACGG
TGAGAAACGACGA
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