mRNA_Ecto-sp13_S_contig62582.16984.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 139 bits (350), Expect = 1.110e-36 Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1
Query: 13 DVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSMSAPCVVDG 207
DVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLS++APCVVDG
Sbjct: 2547 DVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSLAAPCVVDG 2611
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Match: D7FJ69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ69_ECTSI) HSP 1 Score: 123 bits (309), Expect = 4.610e-34 Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 1
Query: 13 DVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSMSAPCVVD 204
DVCSNGIPG+QSG +CCLAECG CGGSGCAELGGGLGEHNCC+ EIE+FGELCS+ + APCVVD
Sbjct: 33 DVCSNGIPGVQSGVSCCLAECGGCGGSGCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVVD 96
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE) HSP 1 Score: 130 bits (328), Expect = 1.030e-33 Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1
Query: 10 ADVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSMSAPCVVDG 207
+D+CSNGIPGIQSGNACCLAECG CGGSGCA+LGGGLGE NCCQSEIEDFGELCS+ M+APCVVDG
Sbjct: 1874 SDMCSNGIPGIQSGNACCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDG 1939
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Match: A0A6H5JII7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII7_9PHAE) HSP 1 Score: 125 bits (314), Expect = 5.020e-32 Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 1
Query: 13 DVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSMSAPCVVDG 207
DVCSNGIPG+QSG +CCLAECG CGGSGCAELGGGLGEHNCC+ EIE+FGELCS+ + APCV+DG
Sbjct: 463 DVCSNGIPGVQSGVSCCLAECGGCGGSGCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVIDG 527
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE) HSP 1 Score: 117 bits (293), Expect = 5.470e-29 Identity = 50/66 (75.76%), Postives = 58/66 (87.88%), Query Frame = 1
Query: 13 DVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSMSAPCVVDGE 210
DVCSNGIPGIQSG CCLAECG CGG GCAE GGGLG+ NCCQ IE++GELCS++++APC+VDGE
Sbjct: 728 DVCSNGIPGIQSGITCCLAECGECGGPGCAEFGGGLGQDNCCQGRIEEYGELCSVTLAAPCIVDGE 793
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Match: A0A6H5K6S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6S4_9PHAE) HSP 1 Score: 111 bits (277), Expect = 4.990e-27 Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 1
Query: 13 DVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSMSAPCVVDGE 210
D+CSNG GIQSGNACCLAECG CGG GC E GGGLG CC+S+IE++GELCS++++APC +DGE
Sbjct: 444 DMCSNGFSGIQSGNACCLAECGECGGHGCGEFGGGLGADKCCESDIEEYGELCSIALAAPCYIDGE 509
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI) HSP 1 Score: 105 bits (261), Expect = 1.160e-24 Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 1
Query: 13 DVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSMSAPCVVD 204
DVCSNG PGIQSG++CC AEC ACGG GCAE GGGLGE NCC IE++GELCS +++APC VD
Sbjct: 540 DVCSNGFPGIQSGDSCCHAECEACGGFGCAEFGGGLGEDNCCAVRIEEYGELCSTALAAPCYVD 603
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Match: D7FZM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM0_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 7.630e-14 Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = 1
Query: 19 CSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSMSAPCVV 201
CSNG+PG Q G ACCL CG CGG GC + G G +CC S I + +C + APC++
Sbjct: 7 CSNGLPGYQDGQACCLMNCGLCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCII 67
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 3.600e-13 Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 1
Query: 10 ADVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSMSAPCVVDGE 210
A CSNG PGI+ ACC+++CG CGGSGC+ GL +CC I G CS + APC +DG+
Sbjct: 18 AQKCSNGFPGIEKSGACCVSDCGTCGGSGCSSRESGLTGDDCCTKNILKQGAPCSATGHAPCFLDGD 84
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Match: D7FRL2_ECTSI (Endo alpha-1,4 polygalactosaminidase precusor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL2_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 3.640e-13 Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 1
Query: 37 GIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDFGELCSLSMSAPCVVDGE 210
GI +G ACC EC +CGG GC+ GGGL +CC S IE+ G LCS++ APC VDGE
Sbjct: 77 GILNGQACCRHECRSCGGVGCSNRGGGLTGDDCCVSNIEEHGALCSVAGQAPCFVDGE 134 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62582.16984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig62582.16984.1 >prot_Ecto-sp13_S_contig62582.16984.1 ID=prot_Ecto-sp13_S_contig62582.16984.1|Name=mRNA_Ecto-sp13_S_contig62582.16984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp MADVCSNGIPGIQSGNACCLAECGACGGSGCAELGGGLGEHNCCQSEIEDback to top mRNA from alignment at Ecto-sp13_S_contig62582:354..572+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig62582.16984.1 ID=mRNA_Ecto-sp13_S_contig62582.16984.1|Name=mRNA_Ecto-sp13_S_contig62582.16984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62582:354..572+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62582:354..572+ >mRNA_Ecto-sp13_S_contig62582.16984.1 ID=mRNA_Ecto-sp13_S_contig62582.16984.1|Name=mRNA_Ecto-sp13_S_contig62582.16984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62582:354..572+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |