mRNA_Ecto-sp13_S_contig6255.16981.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6255.16981.1 vs. uniprot
Match: D7FLY9_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY9_ECTSI) HSP 1 Score: 399 bits (1025), Expect = 1.410e-134 Identity = 193/208 (92.79%), Postives = 197/208 (94.71%), Query Frame = 1
Query: 34 SGEVFLWEKSAAGLFAGAMNSPFRTVFDRVKTVMQVRVGNGRAAPYSWSGACAVDLARREGIMSGLFRGIESTMLREMLQCAIYYPSYEVTKDLMVRRSTSGKSSVPEPVLQMLAGGIAGCATWLPPVYCLDVIKTRIQVAEPGVYRGSWDCLRKTVRSEGTPVLLRGLGLSMLRAFPMHGLVFVGYEATIGLLTPRENCPAAVLANT 657
SGEVFLWEKSAAG FAGAMNSPFRTVFDRVKTVMQVRVGNGRAAPYSWSGACA DL RREG+MSGLFRGIESTMLREMLQCAIYYPSYEVTKDL+ RRSTSGKSSVPEP LQMLAGGIAGCATWLPPVYCLDVIKTR+Q AEPGVY G+WDCLRKTVRSEGTPVL RGLGLSMLRAFPMHGLVFVGYE TIGLLT RENCP AVLANT
Sbjct: 52 SGEVFLWEKSAAGFFAGAMNSPFRTVFDRVKTVMQVRVGNGRAAPYSWSGACAADLVRREGVMSGLFRGIESTMLREMLQCAIYYPSYEVTKDLLARRSTSGKSSVPEPALQMLAGGIAGCATWLPPVYCLDVIKTRLQSAEPGVYGGTWDCLRKTVRSEGTPVLFRGLGLSMLRAFPMHGLVFVGYETTIGLLTTRENCPTAVLANT 259
BLAST of mRNA_Ecto-sp13_S_contig6255.16981.1 vs. uniprot
Match: D7FM07_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM07_ECTSI) HSP 1 Score: 259 bits (662), Expect = 3.200e-80 Identity = 129/200 (64.50%), Postives = 151/200 (75.50%), Query Frame = 1
Query: 40 EVFLWEKSAAGLFAGAMNSPFRTVFDRVKTVMQVRVGNGRAAPYSWSGACAVDLARREGIMSGLFRGIESTMLREMLQCAIYYPSYEVTKDLMVRRSTSGKSSVPEPVLQMLAGGIAGCATWLPPVYCLDVIKTRIQVAEPGVYRGSWDCLRKTVRSEGTPVLLRGLGLSMLRAFPMHGLVFVGYEATIGLL--TPRENC 633
++ L EK AG +AG MN+P R VF+RVK VMQVR G +PYSWSGAC VDL RREGI GL RG+ +TMLRE LQ IYYPSYE+ KD + + ++VPEP+L LAGG+AGC WLPP+YCLDVIKTR+Q AEPGVYRG DCL KT+R+EG PVL RGLG +MLRAFPMHGLVF+GYE TI LL PR +C
Sbjct: 24 KLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGIAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTS-TAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSC 222
BLAST of mRNA_Ecto-sp13_S_contig6255.16981.1 vs. uniprot
Match: A0A6H5JUA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA4_9PHAE) HSP 1 Score: 259 bits (662), Expect = 3.630e-79 Identity = 129/200 (64.50%), Postives = 151/200 (75.50%), Query Frame = 1
Query: 40 EVFLWEKSAAGLFAGAMNSPFRTVFDRVKTVMQVRVGNGRAAPYSWSGACAVDLARREGIMSGLFRGIESTMLREMLQCAIYYPSYEVTKDLMVRRSTSGKSSVPEPVLQMLAGGIAGCATWLPPVYCLDVIKTRIQVAEPGVYRGSWDCLRKTVRSEGTPVLLRGLGLSMLRAFPMHGLVFVGYEATIGLL--TPRENC 633
E+ L EK AG +AG MN+P R VF+RVK VMQVR G +PYSWSGAC VDL RREG+ GL RG+ +TMLRE LQ IYYPSYE+ KD ++ + ++VPEP+L LAGG+AGC WLPP YCLDVIKTR+Q AEPGVYRG DCL KT+R+EG PVL RGLG +MLRAFPMHGLVF+GYE TI LL PR +C
Sbjct: 99 ELTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYLLPPDRTS-TAVPEPMLLALAGGLAGCVMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGARPRSSC 297
BLAST of mRNA_Ecto-sp13_S_contig6255.16981.1 vs. uniprot
Match: A0A836C8G7_9STRA (Carnitine/acylcarnitine carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G7_9STRA) HSP 1 Score: 198 bits (504), Expect = 1.370e-56 Identity = 101/187 (54.01%), Postives = 128/187 (68.45%), Query Frame = 1
Query: 55 EKSAAGLFAGAMNSPFRTVFDRVKTVMQVRVGNGRAAPYSWSGACAVDLARREGIMSGLFRGIESTMLREMLQCAIYYPSYEVTKDLMVRRSTSGKSSVPEPVLQMLAGGIAGCATWLPPVYCLDVIKTRIQVAEPGVYRGSWDCLRKTVRSEGTPVLLRGLGLSMLRAFPMHGLVFVGYEATIGLL 615
E + AG +AGA+ +P R VF+RVK VMQVR G G APYSWSGAC VDL R EG+ GLFRG+ S +RE+ Q A+YYP+Y+V K ++ G S P+ +LAGGIAG WLPP+Y +DV+KT+IQ A PG Y+ D RKTV +EGT L RGLG S++RAFP+H +F GYE T+ L
Sbjct: 66 EMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAIL--PADGHIS---PIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHL 247
BLAST of mRNA_Ecto-sp13_S_contig6255.16981.1 vs. uniprot
Match: W7TE76_9STRA (Mitochondrial carrier family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE76_9STRA) HSP 1 Score: 195 bits (495), Expect = 5.580e-55 Identity = 100/219 (45.66%), Postives = 138/219 (63.01%), Query Frame = 1
Query: 40 EVFLWEKSAAGLFAGAMNSPFRTVFDRVKTVMQVRVGNGRA--APYSWSGACAVDLARREGIMSGLFRGIESTMLREMLQCAIYYPSYEVT----KDLMVRRSTSGKS-------------SVP-EPVLQMLAGGIAGCATWLPPVYCLDVIKTRIQVAEPGVYRGSWDCLRKTVRSEGTPVLLRGLGLSMLRAFPMHGLVFVGYEATIGLLTPRENCP 636
E+ L E +A+G +AG + SP R +F+R+K+VMQVR G A PY WSG C V L R+EG+ +GLFRG+++T LRE+ Q A+YYP YE+ + +M + SG S S P P L +LAGG+AG WLPP YCLDV+K+R+Q A PGVY WDC +K+ + EG V RGL ++++RAFP++ +F+GYE T+ L E P
Sbjct: 47 ELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSXNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEIP 265
BLAST of mRNA_Ecto-sp13_S_contig6255.16981.1 vs. uniprot
Match: A0A4D9D591_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D591_9STRA) HSP 1 Score: 167 bits (422), Expect = 2.570e-45 Identity = 85/188 (45.21%), Postives = 115/188 (61.17%), Query Frame = 1
Query: 133 MQVRVGNGRA--APYSWSGACAVDLARREGIMSGLFRGIESTMLREMLQCAIYYPSYEVT----KDLMVRRSTSGKSSVPE--------------PVLQMLAGGIAGCATWLPPVYCLDVIKTRIQVAEPGVYRGSWDCLRKTVRSEGTPVLLRGLGLSMLRAFPMHGLVFVGYEATIGLLTPRENCP 636
MQVR G APY WSG C V L R+EG+ +GLFRG+++T LRE+ Q A+YYP YE+ + +M + SG SS + P L +LAGG+AG WLPP YCLDV+K+R+Q A PGVY WDC +K+ + EG V RGL ++++RAFP++ +F+GYE T+ L E P
Sbjct: 1 MQVRKAAGGVDKAPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSHEKNRVNRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEIP 188
BLAST of mRNA_Ecto-sp13_S_contig6255.16981.1 vs. uniprot
Match: A0A6H5K324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K324_9PHAE) HSP 1 Score: 153 bits (386), Expect = 2.390e-40 Identity = 73/83 (87.95%), Postives = 78/83 (93.98%), Query Frame = 1
Query: 199 LARREGIMSGLFRGIESTMLREMLQCAIYYPSYEVTKDLMVRRSTSGKSSVPEPVLQMLAGGIAGCATWLPPVYCLDVIKTRI 447
++R EGIMSGLF GIESTML EMLQCAIYYPSYEVTKDL++RRS +GKSSVPEP LQMLAGGIAGCATWLPPVYCLDVIKTRI
Sbjct: 93 VSRTEGIMSGLFPGIESTMLGEMLQCAIYYPSYEVTKDLLIRRSRTGKSSVPEPALQMLAGGIAGCATWLPPVYCLDVIKTRI 175
BLAST of mRNA_Ecto-sp13_S_contig6255.16981.1 vs. uniprot
Match: A0A482SEK8_9ARCH (MC/SLC25 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEK8_9ARCH) HSP 1 Score: 147 bits (370), Expect = 1.270e-37 Identity = 70/165 (42.42%), Postives = 98/165 (59.39%), Query Frame = 1
Query: 40 EVFLWEKSAAGLFAGAMNSPFRTVFDRVKTVMQVRVGNGRAAPYSWSGACAVDLARREGIMSGLFRGIESTMLREMLQCAIYYPSYEVTKDLMVRRSTSGKSSVPEPVLQMLAGGIAGCATWLPPVYCLDVIKTRIQVAEPGVYRGSWDCLRKTVRSEGTPVLLR 534
E+ + S AG + G + SP R + +R+K+VMQ+ +G +PYSWSGACA L + EG+ GLF+G S +LRE+ Q ++YYP YE K + + +V LAGG AG WLPP+YC DVIK+R+Q A G Y G DC R+ ++ G+ V R
Sbjct: 43 ELGYADLSMAGAYTGVLQSPARQLVERIKSVMQIHERSGGKSPYSWSGACAYHLVKTEGVRVGLFQGFSSVLLREIPQFSVYYPCYEFAKSIYTEKIPDNPKTV-----NFLAGGTAGVVQWLPPIYCFDVIKSRMQTAPKGAYSGLMDCARQLYQAHGSSVFFR 202
BLAST of mRNA_Ecto-sp13_S_contig6255.16981.1 vs. uniprot
Match: K8Z8A3_NANGC (Mitochondrial carrier family n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8A3_NANGC) HSP 1 Score: 149 bits (376), Expect = 1.510e-37 Identity = 81/201 (40.30%), Postives = 117/201 (58.21%), Query Frame = 1
Query: 40 EVFLWEKSAAGLFAGAMNSPFRTVFDRVKTVMQVRVGNGRA--APYSWSGACAVDLARREGIMSGLFRGIESTMLREMLQCAIYYPSYEVTKDLMVRRSTSGKSSVPEPVLQMLAGGIAGCATWLPPVYCLDVIKTRIQVAEPGVYRGSWDCLRKTVRSEGTPVLLRGLGLSMLRAFPMHGLVFVGYEATIGLLTPRENCP 636
E+ L E +A+G +AG + SP R +F+R+K+VMQVR G A PY WSG C ++ R L++M+ + S ++ V R S + +P P L +LAGG+AG WLPP YCLDV+K+R+Q A PGVY WDC +K+ + EG V RGL ++++RAFP++ +F+GYE T+ L E P
Sbjct: 97 ELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLYEMNVRA--------------LQKMMAASNASGSSSNESNI-VHRKPSSSTPLP-PHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEIP 281
BLAST of mRNA_Ecto-sp13_S_contig6255.16981.1 vs. uniprot
Match: A0A7S1G657_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G657_9STRA) HSP 1 Score: 137 bits (346), Expect = 1.030e-32 Identity = 82/218 (37.61%), Postives = 118/218 (54.13%), Query Frame = 1
Query: 1 RRRKEDEGGGGSGEVFLWEKSAAGLFAGAMNSPFRTVFDRVKTVMQVRVGNGRAAPYSWSGACAVDLARREGIMSGLFRGIESTMLREMLQCAIYYPSYEVTKDLMVRRSTSGKSSVPEPVLQMLAGGIAGCATWLPPVYCLDVIKTRIQVAEPGVYRGSWDCLRKTVRSEGTPVLLRGLGLSMLRAFPMHGLVFVGYEATIGLLTPRENCPAAVLAN 654
RRR + GG E+ + E AAG AG +++ R +RVK VMQVR + S C V R EG++S G +T+LRE+ Q Y+P++E+TK + G S+ + ++AGG+AG WLPP+YC+DV+K+R++V G G LR +V EG VLLRG+G +M+RAFPMH + E L+ E A A+
Sbjct: 133 RRRNAEAAGGVDRELSMEESMAAGAVAGVVSTVLRAPVERVKAVMQVRRNPDGTKVFRNSWRCLVGTMRTEGLLSPFAAG-RATLLRELFQGVAYFPAFEITKRALT--PAGGSSNDLDFWRLLIAGGVAGITQWLPPMYCIDVVKSRMEVPPAGSTPGVLGVLRASVAKEGGMVLLRGMGPAMVRAFPMHATILTTNELMTAWLSKLEVVDVAPAAS 347 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6255.16981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6255.16981.1 >prot_Ecto-sp13_S_contig6255.16981.1 ID=prot_Ecto-sp13_S_contig6255.16981.1|Name=mRNA_Ecto-sp13_S_contig6255.16981.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=191bp MNSPFRTVFDRVKTVMQVRVGNGRAAPYSWSGACAVDLARREGIMSGLFRback to top mRNA from alignment at Ecto-sp13_S_contig6255:566..6292+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6255.16981.1 ID=mRNA_Ecto-sp13_S_contig6255.16981.1|Name=mRNA_Ecto-sp13_S_contig6255.16981.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5727bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6255:566..6292+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6255:566..6292+ >mRNA_Ecto-sp13_S_contig6255.16981.1 ID=mRNA_Ecto-sp13_S_contig6255.16981.1|Name=mRNA_Ecto-sp13_S_contig6255.16981.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6255:566..6292+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |