mRNA_Ecto-sp13_S_contig6251.16980.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6251.16980.1
Unique NamemRNA_Ecto-sp13_S_contig6251.16980.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6251.16980.1 vs. uniprot
Match: A0A6H5KKL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL5_9PHAE)

HSP 1 Score: 572 bits (1473), Expect = 1.160e-183
Identity = 321/404 (79.46%), Postives = 338/404 (83.66%), Query Frame = 1 
Query:    1 DDGTAAAVIRSDRLEEGAGSTLVVPESALGGEVAVAVADDGGLSGVTEADGYHSRVEEPTPAADVVERVSRSDGGVLSGGQATSLDAGYTFIEKAEPLDGGRELEEGGNREELDGEAEALGAEVDQPHGSPPRLPISTPPDVEVPGPLSIDEGEKGDSAGPENRDEKLGLGSNGDAGDVGENEAKEALVGDVQLLPGAIGGGNESDDKQPGGAWSGGYDFEEEAVVPWHEGEGLQGEKAEAVVVEDGRRLPPDVQEGDEEDDVSTWSGRRFDFEEDAVVAAEPSARVKPXXXXXXGDEAGLVTADAP--PVEAEGERGNVGEVNGYRAWAAGGGGAVGDVVGGQQAGEPDADQLLAEGESSLREASFSAVAARAEDRIDYLETFDHVEDAVRPPAVGKEEAPLL 1206
            DDGTAAAV+RS  LEEGAGSTLVVPESAL GE+AVAVA DGGL+GV EADG +SRVEEPTPAADV ERVS SDG V SGGQATS DAGYTFIEKAEP +G RE +EGG+RE LDGEAEALGAEVDQPHGSPPRL ISTP DVE PGPLSID GE+G S GPEN+DEKLG GSNGD   VGENE +EALVGDVQLLPGAIG GNESDDKQPGGAWSGGYDFEEEAVVPW EGE  Q E+AEAVVV D R +PPDVQEGDEEDD STWSGRRFDF+EDAVVAAEPS RV+       GDEA L  ADAP  PVEAEGERG+V EVN YRA+ AG GGA GD   GQQAGE  ADQ LAE ESS  EA FSAVAARAED IDYLETFDHVEDAVRPPAVG+ E PLL
Sbjct:  982 DDGTAAAVVRSGHLEEGAGSTLVVPESALVGEIAVAVAADGGLAGVAEADGNYSRVEEPTPAADVAERVSGSDGSVFSGGQATSFDAGYTFIEKAEPPEGARERQEGGDREGLDGEAEALGAEVDQPHGSPPRLSISTPSDVEEPGPLSIDRGEEGASPGPENQDEKLGFGSNGDVEGVGENEPEEALVGDVQLLPGAIGSGNESDDKQPGGAWSGGYDFEEEAVVPWDEGEDRQDEQAEAVVVGDDRGVPPDVQEGDEEDDASTWSGRRFDFDEDAVVAAEPSFRVEASSHDDDGDEACLARADAPAAPVEAEGERGDVREVNVYRAFVAGSGGAAGDAAVGQQAGELHADQPLAE-ESSRSEAPFSAVAARAEDGIDYLETFDHVEDAVRPPAVGEGEPPLL 1384
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6251.16980.1 vs. uniprot
Match: D7FUD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD9_ECTSI)

HSP 1 Score: 564 bits (1453), Expect = 3.110e-179
Identity = 318/405 (78.52%), Postives = 331/405 (81.73%), Query Frame = 1 
Query:    1 DDGTAAAVIRSDRLEEGAGSTLVVPESALGGEVAVAVADDGGLSGVTEADGYHSRVEEPTPAADVVERVSRSDGGVLSGGQATSLDAGYTFIEKAEPLDGGRELEEGGNREELDGEAEALGAEVDQPHGSPPRLPISTPPDVEVPGPLSIDEGEKGDSAGPENRDEKLGLGSNGDAGDVGENEAKEALVGDVQLLPGAIGGGNESDDKQPGGAWSGGYDFEEEAVVPWHEGEGLQGEKAEAVVVEDGRRLPPDVQEGDEEDDVSTWSGRRFDFEEDAVVAAEPSARVKPXXXXXXGDEAGLVTADAPPV--EAEGERGNVGEVNGYRAWAAGGGGAVGDVVGGQQAGEPDADQLLAEGESSLREASFSAVAARAEDRIDYLETFDHVEDAVRPPAVGKEEAPLLL 1209
            DDGTAAAV+RS  LEEGAGSTLVVPESALGGEVAVAVA DGGLSGV +ADG H RVEEPT  ADV ERVSRSD GVLSGGQATSLDAGYTF+EKAEP DGG ELEE                 VDQP GSPPRL +STPPDV  PGPLSID GE+G SAGPENR EKLGLGSN D  DVGENE KEALVGDVQL PGAIGGGNESD+KQPGGAWSGGYDFEE+AVVPW EGEGLQGEKAEAVVV DGR LPPDVQEGDEEDD STWSGR+FDFEEDAVVAAEPSAR +       GDEA L   DAP V  EAEGERG+VGEVN YRAWAAGGGGA GD V  Q+AGEP A+Q LAE ESS  E  FSAVAARAED IDYLETFDHVEDAVRPPAVG+EE PLLL
Sbjct: 3030 DDGTAAAVVRSGNLEEGAGSTLVVPESALGGEVAVAVAADGGLSGVADADGNHGRVEEPTLEADVAERVSRSDSGVLSGGQATSLDAGYTFVEKAEPPDGGGELEEXXXXXXXXXXXXXXXXXVDQPRGSPPRLLVSTPPDVVEPGPLSIDGGEEGASAGPENRHEKLGLGSNVDVVDVGENEPKEALVGDVQLPPGAIGGGNESDNKQPGGAWSGGYDFEEKAVVPWDEGEGLQGEKAEAVVVGDGRGLPPDVQEGDEEDDASTWSGRKFDFEEDAVVAAEPSARGEAPPDDDDGDEACLARTDAPAVAVEAEGERGDVGEVNVYRAWAAGGGGAAGDAVVEQEAGEPHAEQPLAEEESSRPEVPFSAVAARAEDGIDYLETFDHVEDAVRPPAVGEEEPPLLL 3434
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6251.16980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKL5_9PHAE1.160e-18379.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUD9_ECTSI3.110e-17978.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6251contigEcto-sp13_S_contig6251:2383..3592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1211
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_000600.1
Cds size1209
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463869.2487457-CDS-Ecto-sp13_S_contig6251:2382..35911681463869.2487457-CDS-Ecto-sp13_S_contig6251:2382..3591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6251 2383..3591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6251.16980.1prot_Ecto-sp13_S_contig6251.16980.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6251 2383..3591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6251.16980.1

>prot_Ecto-sp13_S_contig6251.16980.1 ID=prot_Ecto-sp13_S_contig6251.16980.1|Name=mRNA_Ecto-sp13_S_contig6251.16980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=403bp
DDGTAAAVIRSDRLEEGAGSTLVVPESALGGEVAVAVADDGGLSGVTEAD
GYHSRVEEPTPAADVVERVSRSDGGVLSGGQATSLDAGYTFIEKAEPLDG
GRELEEGGNREELDGEAEALGAEVDQPHGSPPRLPISTPPDVEVPGPLSI
DEGEKGDSAGPENRDEKLGLGSNGDAGDVGENEAKEALVGDVQLLPGAIG
GGNESDDKQPGGAWSGGYDFEEEAVVPWHEGEGLQGEKAEAVVVEDGRRL
PPDVQEGDEEDDVSTWSGRRFDFEEDAVVAAEPSARVKPPPDDDDGDEAG
LVTADAPPVEAEGERGNVGEVNGYRAWAAGGGGAVGDVVGGQQAGEPDAD
QLLAEGESSLREASFSAVAARAEDRIDYLETFDHVEDAVRPPAVGKEEAP
LLL
back to top

mRNA from alignment at Ecto-sp13_S_contig6251:2383..3592+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6251.16980.1 ID=mRNA_Ecto-sp13_S_contig6251.16980.1|Name=mRNA_Ecto-sp13_S_contig6251.16980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6251:2383..3592+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGACGGGACTGCGGCGGCGGTGATCCGAAGCGACCGCCTCGAAGAGGG
CGCAGGAAGTACACTTGTCGTGCCGGAGTCTGCGCTGGGAGGAGAGGTCG
CGGTTGCGGTGGCTGATGACGGTGGTCTTTCTGGCGTGACTGAAGCCGAC
GGTTACCACAGCCGGGTGGAAGAGCCCACGCCGGCGGCCGACGTCGTCGA
ACGGGTTTCCAGGAGCGACGGCGGCGTTCTTTCAGGTGGGCAGGCGACGT
CGCTCGACGCCGGCTACACATTCATCGAGAAGGCTGAGCCCCTGGACGGT
GGACGAGAACTCGAGGAAGGTGGGAATCGCGAGGAGCTGGACGGCGAAGC
GGAGGCCCTAGGTGCAGAGGTAGATCAACCACATGGAAGCCCCCCGCGGC
TGCCGATATCGACTCCTCCTGACGTTGAAGTGCCGGGGCCCCTCTCCATC
GATGAGGGTGAAAAAGGCGATTCCGCTGGGCCGGAGAATCGAGATGAGAA
GCTCGGACTTGGCAGTAACGGAGATGCAGGAGATGTCGGAGAAAACGAGG
CTAAAGAGGCGTTGGTCGGAGATGTGCAGCTGCTCCCCGGTGCTATCGGG
GGGGGGAACGAAAGCGACGATAAGCAGCCCGGGGGGGCTTGGTCCGGAGG
CTACGACTTCGAGGAGGAGGCCGTGGTTCCGTGGCACGAGGGAGAAGGTC
TGCAGGGCGAGAAAGCGGAAGCTGTCGTTGTCGAAGATGGTAGACGCTTG
CCGCCGGACGTCCAAGAAGGTGATGAAGAGGACGACGTCAGCACGTGGTC
GGGGCGTCGGTTCGACTTCGAAGAGGATGCGGTCGTTGCCGCCGAGCCTT
CGGCCCGGGTCAAACCTCCGCCAGATGACGACGATGGCGATGAAGCCGGT
CTGGTGACGGCTGACGCCCCCCCCGTGGAAGCAGAGGGCGAGCGTGGCAA
TGTCGGAGAGGTGAACGGGTACCGTGCCTGGGCCGCTGGGGGTGGCGGTG
CCGTTGGAGACGTTGTGGGAGGGCAGCAGGCCGGCGAACCGGATGCTGAC
CAACTGCTGGCGGAAGGAGAGTCGTCGCTTCGGGAGGCCTCCTTCTCCGC
GGTTGCGGCGCGAGCGGAGGATCGCATCGACTATCTCGAAACTTTCGACC
ACGTGGAAGATGCCGTCAGGCCGCCGGCTGTCGGCAAGGAGGAGGCGCCG
CTGCTGCTAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6251:2383..3592+

>mRNA_Ecto-sp13_S_contig6251.16980.1 ID=mRNA_Ecto-sp13_S_contig6251.16980.1|Name=mRNA_Ecto-sp13_S_contig6251.16980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1209bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6251:2383..3592+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGACGGGACTGCGGCGGCGGTGATCCGAAGCGACCGCCTCGAAGAGGG
CGCAGGAAGTACACTTGTCGTGCCGGAGTCTGCGCTGGGAGGAGAGGTCG
CGGTTGCGGTGGCTGATGACGGTGGTCTTTCTGGCGTGACTGAAGCCGAC
GGTTACCACAGCCGGGTGGAAGAGCCCACGCCGGCGGCCGACGTCGTCGA
ACGGGTTTCCAGGAGCGACGGCGGCGTTCTTTCAGGTGGGCAGGCGACGT
CGCTCGACGCCGGCTACACATTCATCGAGAAGGCTGAGCCCCTGGACGGT
GGACGAGAACTCGAGGAAGGTGGGAATCGCGAGGAGCTGGACGGCGAAGC
GGAGGCCCTAGGTGCAGAGGTAGATCAACCACATGGAAGCCCCCCGCGGC
TGCCGATATCGACTCCTCCTGACGTTGAAGTGCCGGGGCCCCTCTCCATC
GATGAGGGTGAAAAAGGCGATTCCGCTGGGCCGGAGAATCGAGATGAGAA
GCTCGGACTTGGCAGTAACGGAGATGCAGGAGATGTCGGAGAAAACGAGG
CTAAAGAGGCGTTGGTCGGAGATGTGCAGCTGCTCCCCGGTGCTATCGGG
GGGGGGAACGAAAGCGACGATAAGCAGCCCGGGGGGGCTTGGTCCGGAGG
CTACGACTTCGAGGAGGAGGCCGTGGTTCCGTGGCACGAGGGAGAAGGTC
TGCAGGGCGAGAAAGCGGAAGCTGTCGTTGTCGAAGATGGTAGACGCTTG
CCGCCGGACGTCCAAGAAGGTGATGAAGAGGACGACGTCAGCACGTGGTC
GGGGCGTCGGTTCGACTTCGAAGAGGATGCGGTCGTTGCCGCCGAGCCTT
CGGCCCGGGTCAAACCTCCGCCAGATGACGACGATGGCGATGAAGCCGGT
CTGGTGACGGCTGACGCCCCCCCCGTGGAAGCAGAGGGCGAGCGTGGCAA
TGTCGGAGAGGTGAACGGGTACCGTGCCTGGGCCGCTGGGGGTGGCGGTG
CCGTTGGAGACGTTGTGGGAGGGCAGCAGGCCGGCGAACCGGATGCTGAC
CAACTGCTGGCGGAAGGAGAGTCGTCGCTTCGGGAGGCCTCCTTCTCCGC
GGTTGCGGCGCGAGCGGAGGATCGCATCGACTATCTCGAAACTTTCGACC
ACGTGGAAGATGCCGTCAGGCCGCCGGCTGTCGGCAAGGAGGAGGCGCCG
CTGCTGCTA
back to top