mRNA_Ecto-sp13_S_contig62461.16976.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62461.16976.1
Unique NamemRNA_Ecto-sp13_S_contig62461.16976.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62461.16976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62461contigEcto-sp13_S_contig62461:2..703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size347
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-22_002710.1
Cds size237
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463868.9760714-UTR-Ecto-sp13_S_contig62461:1..1111681463868.9760714-UTR-Ecto-sp13_S_contig62461:1..111Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig62461 2..111 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463868.9883356-CDS-Ecto-sp13_S_contig62461:111..2381681463868.9883356-CDS-Ecto-sp13_S_contig62461:111..238Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62461 112..238 +
1681463869.0003154-CDS-Ecto-sp13_S_contig62461:593..7031681463869.0003154-CDS-Ecto-sp13_S_contig62461:593..703Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62461 594..703 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62461.16976.1prot_Ecto-sp13_S_contig62461.16976.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62461 112..703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62461.16976.1

>prot_Ecto-sp13_S_contig62461.16976.1 ID=prot_Ecto-sp13_S_contig62461.16976.1|Name=mRNA_Ecto-sp13_S_contig62461.16976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MTKEVSTALVGPVPQASCLVSTEPGPGGIFGSEPTSRPYYVTSRRRRQPR
RGGTHGRSRHAARGGQPRCSRRGSRDAR*
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mRNA from alignment at Ecto-sp13_S_contig62461:2..703+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62461.16976.1 ID=mRNA_Ecto-sp13_S_contig62461.16976.1|Name=mRNA_Ecto-sp13_S_contig62461.16976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62461:2..703+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACACGGCCCGCGATGGTTACAGTGTCAGACTGACACTGTACGTGTCGGT
ACACATGGCCCACGGCCCACGGCCCGCGATATGCCGCTCTGCCGTCCCTA
TGAAACATAGATGACCAAAGAAGTCAGCACAGCTCTTGTGGGTCCAGTTC
CTCAGGCTTCCTGTTTGGTTTCAACAGAACCGGGACCTGGCGGAATTTTT
GGGAGTGAGCCGACCAGCCGGCCGTATTATGTGACAAGTAAGGCAGTAAG
GCGCCGTCATCGGATAGCGGGATTTTTGGTGTTCTGTCTTGATGTCTTCA
TATTGCACCGAACCGTGGTCCCGCCTACCCTTCATTGCATGGTGGACCAC
GTCCTTAGTTGTACTTGAACAACCATTCGTCTGTAGCGGAGATGTCTACA
CTAATTTCCTTTGGAATTCATGGTGCCCGGCCTCTGCTGCTGTAGTTTAA
CCATCCGCATTCTACATGTACACCATATAAATTGACTATAAGGTCATTGG
TTCCGAAGCTCCCCTACCTGTGGCGTGCGGGACACGAACACTGACACGGC
CGGGATCACCAACCCCACTATCGGCCAACGTCGTTCTTGAAGGTCGCCGC
CGTCGCCAGCCCCGACGAGGCGGCACGCACGGGAGGAGTCGTCACGCAGC
ACGTGGAGGACAGCCCAGGTGTAGTCGAAGGGGATCACGTGACGCTCGAT
AG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62461:2..703+

>mRNA_Ecto-sp13_S_contig62461.16976.1 ID=mRNA_Ecto-sp13_S_contig62461.16976.1|Name=mRNA_Ecto-sp13_S_contig62461.16976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62461:2..703+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCAAAGAAGTCAGCACAGCTCTTGTGGGTCCAGTTCCTCAGGCTTC
CTGTTTGGTTTCAACAGAACCGGGACCTGGCGGAATTTTTGGGAGTGAGC
CGACCAGCCGGCCGTATTATGTGACAAGTCGCCGCCGTCGCCAGCCCCGA
CGAGGCGGCACGCACGGGAGGAGTCGTCACGCAGCACGTGGAGGACAGCC
CAGGTGTAGTCGAAGGGGATCACGTGACGCTCGATAG
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