mRNA_Ecto-sp13_S_contig62383.16967.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62383.16967.1
Unique NamemRNA_Ecto-sp13_S_contig62383.16967.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig62383.16967.1 vs. uniprot
Match: A0A6H5KPW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPW3_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 3.210e-40
Identity = 79/101 (78.22%), Postives = 85/101 (84.16%), Query Frame = -3 
Query:  351 IDEMAAGFVFVHRGGGRRRPVAPESYSHTEGTPFEASEGRGMGPPGGWEGRGRVSSGYEVGDSGDGGAVEIQGVEKLWAPHNIAAVQHTKAALMRLQNAHR 653
            I+EMAAGFVFV RGGGRR PVAPE+ SHTEGTPFEASEG  M PPG W+ RG VSS   VG+ G GGAVE++GVEKLWAPHN AAVQHTKAALMRLQNA R
Sbjct:  931 IEEMAAGFVFVRRGGGRRPPVAPEASSHTEGTPFEASEGGRMSPPGQWQDRGGVSSCAGVGEGGRGGAVEVEGVEKLWAPHNAAAVQHTKAALMRLQNADR 1031
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BLAST of mRNA_Ecto-sp13_S_contig62383.16967.1 vs. uniprot
Match: D8LCV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV5_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 2.640e-39
Identity = 79/101 (78.22%), Postives = 84/101 (83.17%), Query Frame = -3 
Query:  351 IDEMAAGFVFVHRGGGRRRPVAPESYSHTEGTPFEASEGRGMGPPGGWEGRGRVSSGYEVGDSGDGGAVEIQGVEKLWAPHNIAAVQHTKAALMRLQNAHR 653
            I+EMAAGFVFV RGGGRRRP+APE  SH EGTPFEA+EG GMGPPG W+GRG VSS   VG+    GAVEIQGVEKLWAPHNIAAVQHTKAAL RLQN  R
Sbjct:  663 IEEMAAGFVFVRRGGGRRRPLAPEGSSHAEGTPFEAAEGGGMGPPGEWQGRGGVSSCAGVGE----GAVEIQGVEKLWAPHNIAAVQHTKAALTRLQNVDR 759
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62383.16967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPW3_9PHAE3.210e-4078.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCV5_ECTSI2.640e-3978.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62383contigEcto-sp13_S_contig62383:135..789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size657
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463868.2353592-UTR-Ecto-sp13_S_contig62383:134..4501681463868.2353592-UTR-Ecto-sp13_S_contig62383:134..450Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig62383 135..450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463868.2550867-CDS-Ecto-sp13_S_contig62383:450..7891681463868.2550867-CDS-Ecto-sp13_S_contig62383:450..789Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62383 451..789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62383.16967.1prot_Ecto-sp13_S_contig62383.16967.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62383 451..789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62383.16967.1

>prot_Ecto-sp13_S_contig62383.16967.1 ID=prot_Ecto-sp13_S_contig62383.16967.1|Name=mRNA_Ecto-sp13_S_contig62383.16967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MSGENLHDIQLIDVRSAASSKQLSCVAPQRCCAAPTAFQPPESRRHHHRH
YHQPHSRMRLDHDLPIPRVDPFPYLPTPRKEFPRYANRIQVPPAAYARHR
DGQKRIQPPSRRC
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mRNA from alignment at Ecto-sp13_S_contig62383:135..789+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62383.16967.1 ID=mRNA_Ecto-sp13_S_contig62383.16967.1|Name=mRNA_Ecto-sp13_S_contig62383.16967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=655bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62383:135..789+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTGTGCCGCATGTAGATAGATATGTATGGAAACGGATTTACCCCAAAA
GAGATGGATTCAACGGGATCAACATGTTCGCCTACGCTCCTTCGCTTTCC
CATGTGTTAACGAGACGGGTGAAGTACGAACGGGTACAACCCCACACATG
TAAGTATTACGCAGCCACACGGCCTCCTCGTTGCAGCATGGGCCATTTTC
GTCCTGCACGGTGCGGTGAAAACTGCACGCGGTGGCAGAGCGGACCGAAA
TTATGATTGTCCCCCGGGACAACTAAAAATGATCTCTCAGTCACAACATA
GCTCACGCTCGCCAATATGTCCGGGGAAAATCTCCACGACATACAGCTCA
TCGATGTGCGTTCTGCAGCCTCATCAAAGCAGCTTTCGTGTGTTGCACCG
CAGCGATGTTGTGCGGCGCCCACAGCTTTTCAACCCCCTGAATCTCGACG
GCACCACCATCGCCACTATCACCAACCTCATAGCCGGATGAGACTCGACC
ACGACCTTCCCATCCCCCGGGTGGACCCATTCCCCTACCTTCCGACGCCT
CGAAAGGAGTTCCCTCGGTATGCGAATAGGATTCAGGTGCCACCGGCCGC
CTACGCCCGCCACCGCGATGGACAAAAACGAATCCAGCCGCCATCTCGTC
GATGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62383:135..789+

>mRNA_Ecto-sp13_S_contig62383.16967.1 ID=mRNA_Ecto-sp13_S_contig62383.16967.1|Name=mRNA_Ecto-sp13_S_contig62383.16967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62383:135..789+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGGGGAAAATCTCCACGACATACAGCTCATCGATGTGCGTTCTGC
AGCCTCATCAAAGCAGCTTTCGTGTGTTGCACCGCAGCGATGTTGTGCGG
CGCCCACAGCTTTTCAACCCCCTGAATCTCGACGGCACCACCATCGCCAC
TATCACCAACCTCATAGCCGGATGAGACTCGACCACGACCTTCCCATCCC
CCGGGTGGACCCATTCCCCTACCTTCCGACGCCTCGAAAGGAGTTCCCTC
GGTATGCGAATAGGATTCAGGTGCCACCGGCCGCCTACGCCCGCCACCGC
GATGGACAAAAACGAATCCAGCCGCCATCTCGTCGATGC
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