mRNA_Ecto-sp13_S_contig6237.16966.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6237.16966.1
Unique NamemRNA_Ecto-sp13_S_contig6237.16966.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6237.16966.1 vs. uniprot
Match: A0A6H5KXC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC9_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 5.330e-75
Identity = 138/176 (78.41%), Postives = 148/176 (84.09%), Query Frame = 3 
Query:  195 KVVGPVRQSQLPLFPMFCSSICRSLAALAGERDRALRSLAAEEDRRRDMIEELTSLLGGELSCGDVSRLAMGLERIEREAGPAAASEEEGDGGQERGRAWVLEQLRQCLFARVAVQDQLRSSADEIAADMFESEEGLMGFQVGPGGGQDAEGASPISRPPPPADVAVAAAGPGADG 722
            + +   R++Q        + + RSLAALAGER            RRR+MIEELTSLLGGELSCGDVSRLAMGLERIEREAGPAAASEEEGDGGQERGRAWVLEQ+RQCLFA+VAVQDQLRSSADEIAADMFE+EEGLMGFQVGPGGGQDAEGASPISRPPPP DVAVAA GPGADG
Sbjct:   27 RALAEQRKTQEQELDSLSNVLQRSLAALAGERXXXXXXXXXXXXRRRNMIEELTSLLGGELSCGDVSRLAMGLERIEREAGPAAASEEEGDGGQERGRAWVLEQVRQCLFAKVAVQDQLRSSADEIAADMFEAEEGLMGFQVGPGGGQDAEGASPISRPPPPTDVAVAAVGPGADG 202
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BLAST of mRNA_Ecto-sp13_S_contig6237.16966.1 vs. uniprot
Match: D8LD17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD17_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 4.340e-25
Identity = 76/155 (49.03%), Postives = 88/155 (56.77%), Query Frame = 3 
Query:  195 KVVGPVRQSQLPLFPMFCSSICRSLAALAGERDRALRSLAAEEDRRRDMIEELTSLLGGELSCGDVSRLAMGLERIEREAGPAAASEEEGDGGQERGRAWVLEQLRQCLFARVAVQDQLRSSADEIAADMFESEEGLMGFQVGPGGGQDAEGASP 659
            + +   R++Q          + RSLAALAGERD           RRRDMIEELTSLLGGELSCGDVSRLAMGLERIEREAGPAAA        QERGRAWVLE++ Q     + V+   R    + AA +      L G   G G G+  E   P
Sbjct:   27 RALAEQRKTQEEELDSLSDVLQRSLAALAGERDXXXXXXXXXXXRRRDMIEELTSLLGGELSCGDVSRLAMGLERIEREAGPAAAXXXXXXXXQERGRAWVLERVEQLEALALEVR---RGEGKKRAAAVA-----LAGVGEGGGAGEAVESGEP 173
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6237.16966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXC9_9PHAE5.330e-7578.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD17_ECTSI4.340e-2549.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6237contigEcto-sp13_S_contig6237:963..2109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size724
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_001920.2
Cds size624
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463868.1836846-UTR-Ecto-sp13_S_contig6237:962..10601681463868.1836846-UTR-Ecto-sp13_S_contig6237:962..1060Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6237 963..1060 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463868.195575-CDS-Ecto-sp13_S_contig6237:1060..14651681463868.195575-CDS-Ecto-sp13_S_contig6237:1060..1465Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6237 1061..1465 +
1681463868.2071655-CDS-Ecto-sp13_S_contig6237:1890..21091681463868.2071655-CDS-Ecto-sp13_S_contig6237:1890..2109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6237 1891..2109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6237.16966.1prot_Ecto-sp13_S_contig6237.16966.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6237 1061..2109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6237.16966.1

>prot_Ecto-sp13_S_contig6237.16966.1 ID=prot_Ecto-sp13_S_contig6237.16966.1|Name=mRNA_Ecto-sp13_S_contig6237.16966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=208bp
MEQVEGMDAIANPNFPDCMLYPTCYTQCNKPAKVVGPVRQSQLPLFPMFC
SSICRSLAALAGERDRALRSLAAEEDRRRDMIEELTSLLGGELSCGDVSR
LAMGLERIEREAGPAAASEEEGDGGQERGRAWVLEQLRQCLFARVAVQDQ
LRSSADEIAADMFESEEGLMGFQVGPGGGQDAEGASPISRPPPPADVAVA
AAGPGADG
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mRNA from alignment at Ecto-sp13_S_contig6237:963..2109+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6237.16966.1 ID=mRNA_Ecto-sp13_S_contig6237.16966.1|Name=mRNA_Ecto-sp13_S_contig6237.16966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6237:963..2109+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTGTTTGCAATTGACCAATGTGCAAACTCTCCGCGCCCGACTGGCTCTC
TCTCTCTCCCCCTCTCCCTCTCTTAGTACTAAATAAGCTTTTGAGGAAAT
GGAACAGGTAGAGGGTATGGACGCTATCGCTAATCCTAACTTCCCCGATT
GCATGCTTTACCCAACATGTTATACTCAATGTAACAAGCCTGCGAAGGTT
GTTGGTCCTGTCCGACAGTCCCAGCTCCCCCTTTTCCCGATGTTTTGTTC
TTCAATCTGCAGGAGTCTTGCTGCGCTGGCGGGCGAGCGCGACCGGGCTC
TTCGCTCGCTCGCCGCCGAGGAAGACAGGAGGCGAGACATGATCGAAGAG
CTGACAAGTCTCCTCGGGGGGGAGCTTTCCTGCGGAGATGTCTCTCGCTT
GGCGATGGGTCTCGAGCGCATCGAGAGGGAGGCGGGGCCCGCCGCCGCCT
CCGAGGAGGAAGGGGACGGTGGACAGGAACGAGGAAGGGCTTGGGTGCTC
GAGGTCGGTTTTGTTGCTGATTGCTCATAATGCCTTGCTTTTCGTTTTCA
ACAATAGAGGAACAGTTCCCTGCTGCGACAGGTGCTTGTTTGAGACGCGC
TTTTGTGTGCAATGCGCGTATGTTTGATGAAAAAGCACGTTTGAAGTGCA
GTAGCACTTCATCCGTGCAAGTGGGGCAACACCGAGATCATTGCACAGCG
CCGCATGCTCGCTGCAACTGATTTGCACCCTCACCAGATCTCATGATGTT
TTGTGGCTCATGCTGTGCGAACTCGGTCCGATGAAAAGCCAGTGCCCAAC
CAGATTTTCGGGAACCTGGGCTAAACGACCAGCATCCGACGTGCAGAGTT
GGAGCACCCCCCCACCCCCGCCACCCCACCCCCGCCCGCCCACCGCCCAC
ATCCACCCCTTCCCCTCCCCCCTCCCAGCAATTGCGCCAGTGCCTGTTCG
CGCGAGTCGCGGTGCAGGACCAGCTGCGCTCGTCAGCCGATGAAATCGCG
GCCGACATGTTCGAATCAGAGGAAGGGTTGATGGGGTTCCAGGTGGGGCC
CGGTGGCGGCCAAGACGCGGAGGGGGCGTCCCCGATCTCCCGGCCCCCGC
CGCCCGCCGACGTCGCCGTTGCCGCCGCCGGCCCGGGCGCGGACGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6237:963..2109+

>mRNA_Ecto-sp13_S_contig6237.16966.1 ID=mRNA_Ecto-sp13_S_contig6237.16966.1|Name=mRNA_Ecto-sp13_S_contig6237.16966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6237:963..2109+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAACAGGTAGAGGGTATGGACGCTATCGCTAATCCTAACTTCCCCGA
TTGCATGCTTTACCCAACATGTTATACTCAATGTAACAAGCCTGCGAAGG
TTGTTGGTCCTGTCCGACAGTCCCAGCTCCCCCTTTTCCCGATGTTTTGT
TCTTCAATCTGCAGGAGTCTTGCTGCGCTGGCGGGCGAGCGCGACCGGGC
TCTTCGCTCGCTCGCCGCCGAGGAAGACAGGAGGCGAGACATGATCGAAG
AGCTGACAAGTCTCCTCGGGGGGGAGCTTTCCTGCGGAGATGTCTCTCGC
TTGGCGATGGGTCTCGAGCGCATCGAGAGGGAGGCGGGGCCCGCCGCCGC
CTCCGAGGAGGAAGGGGACGGTGGACAGGAACGAGGAAGGGCTTGGGTGC
TCGAGCAATTGCGCCAGTGCCTGTTCGCGCGAGTCGCGGTGCAGGACCAG
CTGCGCTCGTCAGCCGATGAAATCGCGGCCGACATGTTCGAATCAGAGGA
AGGGTTGATGGGGTTCCAGGTGGGGCCCGGTGGCGGCCAAGACGCGGAGG
GGGCGTCCCCGATCTCCCGGCCCCCGCCGCCCGCCGACGTCGCCGTTGCC
GCCGCCGGCCCGGGCGCGGACGGT
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