mRNA_Ecto-sp13_S_contig62364.16965.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig62364.16965.1
Unique Name	mRNA_Ecto-sp13_S_contig62364.16965.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig62364.16965.1 vs. uniprot
Match: A0A6H5JD24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD24_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.820e-24
Identity = 57/85 (67.06%), Postives = 63/85 (74.12%), Query Frame = -2

Query:  175 AWDSQEKALAVLGHRKGVAKAGSDEGRSEIGRMDRLGKTLLSHLWQGGKERLAIGDRSCRNRAPSSRGRVANDLTAKARNQ*EYA 429
            AW+ +E+ +AVLGHR+ V KAG D     I R+DRLGKT LSHLWQ  KERLAIGDRSC N APSSRGRV N LTAKA    EYA
Sbjct:  445 AWNREERTVAVLGHRRWVEKAGRD-----IVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTLEYA 524

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BLAST of mRNA_Ecto-sp13_S_contig62364.16965.1 vs. uniprot
Match: A0A6H5L729_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L729_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 3.620e-24
Identity = 60/107 (56.07%), Postives = 70/107 (65.42%), Query Frame = -2

Query:  109 AWDSQEKALAVLGHRKGVAKAGSDEGRSEIGRMDRLGKTLLSHLWQGGKERLAIGDRSCRNRAPSSRGRVANDLTAKARNQ*EYASPPTDSTPYVRQHSLMGRGSEC 429
            AW+ +E+ +AVLGHR+ V KAG D     I R+DRLGKT LSHLWQ  KERLAI DRSC N APSSR RV NDLTAKA    EY  P   + P + + S +   S C
Sbjct:  243 AWNREERTVAVLGHRRWVEKAGRD-----IVRIDRLGKTFLSHLWQSRKERLAIRDRSCGNNAPSSRARVVNDLTAKACKTEEYV-PSLPNLPPLCEASSIDPYSAC 343

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BLAST of mRNA_Ecto-sp13_S_contig62364.16965.1 vs. uniprot
Match: A0A6H5JCQ0_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ0_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 4.680e-24
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = -2

Query:  199 AWDSQEKALAVLGHRKGVAKAGSDEGRSEIGRMDRLGKTLLSHLWQGGKERLAIGDRSCRNRAPSSRGRVANDLTAK 429
            AW+ +E+ +AVLGHR+ V KAG D     I R+DRLGKT LSHLWQ  KERLAIGDRSC N APSSRGRV N LTAK
Sbjct:  188 AWNREERTVAVLGHRRWVEKAGRD-----IVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAK 259

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BLAST of mRNA_Ecto-sp13_S_contig62364.16965.1 vs. uniprot
Match: A0A6H5KJX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX4_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 5.990e-24
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = -2

Query:  196 AWDSQEKALAVLGHRKGVAKAGSDEGRSEIGRMDRLGKTLLSHLWQGGKERLAIGDRSCRNRAPSSRGRVANDLTAKA 429
            AW+ +E+ +AVLGHR+ V KAG       I R+DRLGKT LSHLWQ  KERLA GDRSC N APSSRGRV N LTAKA
Sbjct:   95 AWNREERTVAVLGHRRWVEKAGRG-----IVRIDRLGKTFLSHLWQSRKERLAFGDRSCGNNAPSSRGRVVNGLTAKA 167

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BLAST of mRNA_Ecto-sp13_S_contig62364.16965.1 vs. uniprot
Match: A0A6H5JE77_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE77_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 7.150e-24
Identity = 57/88 (64.77%), Postives = 63/88 (71.59%), Query Frame = -2

Query:  166 AWDSQEKALAVLGHRKGVAKAGSDEGRSEIGRMDRLGKTLLSHLWQGGKERLAIGDRSCRNRAPSSRGRVANDLTAKARNQ*EYASPP 429
            AW+ +E+ +AVLGHR+ V KAG D     I R+DRLGKT LSHLWQ  KERLAIGDRSC N APSSRGRV N LTAKA    EY   P
Sbjct:  622 AWNREERTVAVLGHRRWVEKAGRD-----IVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTPEYVLLP 704

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BLAST of mRNA_Ecto-sp13_S_contig62364.16965.1 vs. uniprot
Match: A0A6H5KSI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI5_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 9.980e-24
Identity = 55/78 (70.51%), Postives = 60/78 (76.92%), Query Frame = -2

Query:  196 AWDSQEKALAVLGHRKGVAKAGSDEGRSEIGRMDRLGKTLLSHLWQGGKERLAIGDRSCRNRAPSSRGRVANDLTAKA 429
            AW+ +E+ +AVLGHR+ V KAG D     IGR DRLGKT LSHLWQ  KERLAIGDRSC N APSSRGRV N LTAKA
Sbjct:  720 AWNREERTVAVLGHRRWVEKAGRD-----IGRTDRLGKTFLSHLWQYRKERLAIGDRSCGNNAPSSRGRVVNGLTAKA 792

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BLAST of mRNA_Ecto-sp13_S_contig62364.16965.1 vs. uniprot
Match: A0A6H5K4W7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4W7_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.400e-23
Identity = 55/88 (62.50%), Postives = 64/88 (72.73%), Query Frame = -2

Query:  166 AWDSQEKALAVLGHRKGVAKAGSDEGRSEIGRMDRLGKTLLSHLWQGGKERLAIGDRSCRNRAPSSRGRVANDLTAKARNQ*EYASPP 429
            AW+ +E+ +AVLGHR+ V KAG D     I R+DRLGKT LSHLWQ  KERLAIGDRSC N APSSRGRV + LTAKA  +    +PP
Sbjct:  890 AWNREERTVAVLGHRRWVEKAGRD-----IVRIDRLGKTFLSHLWQSSKERLAIGDRSCGNNAPSSRGRVVDGLTAKACKRKNIRTPP 972

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BLAST of mRNA_Ecto-sp13_S_contig62364.16965.1 vs. uniprot
Match: A0A6H5LRL5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRL5_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.190e-23
Identity = 54/78 (69.23%), Postives = 60/78 (76.92%), Query Frame = -2

Query:  196 AWDSQEKALAVLGHRKGVAKAGSDEGRSEIGRMDRLGKTLLSHLWQGGKERLAIGDRSCRNRAPSSRGRVANDLTAKA 429
            AW+ +E+ +AVLGHR+ V KAG D     I R+DRLGKT LSHLWQ  KERLAIGDRSC N APSSRGRV N LTAKA
Sbjct:  372 AWNREERTVAVLGHRRWVEKAGRD-----IVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKA 444

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BLAST of mRNA_Ecto-sp13_S_contig62364.16965.1 vs. uniprot
Match: A0A6H5KVX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX2_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.190e-23
Identity = 54/78 (69.23%), Postives = 60/78 (76.92%), Query Frame = -2

Query:  196 AWDSQEKALAVLGHRKGVAKAGSDEGRSEIGRMDRLGKTLLSHLWQGGKERLAIGDRSCRNRAPSSRGRVANDLTAKA 429
            AW+ +E+ +AVLGHR+ V KAG D     I R+DRLGKT LSHLWQ  KERLAIGDRSC N APSSRGRV N LTAKA
Sbjct:  423 AWNREERTVAVLGHRRWVEKAGRD-----IVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKA 495

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62364.16965.1 vs. uniprot
Match: A0A6H5JKC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKC1_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.280e-23
Identity = 53/78 (67.95%), Postives = 58/78 (74.36%), Query Frame = -2

Query:  196 AWDSQEKALAVLGHRKGVAKAGSDEGRSEIGRMDRLGKTLLSHLWQGGKERLAIGDRSCRNRAPSSRGRVANDLTAKA 429
            AWD++E  +AVLGHR+ V KAG D     I R+DRLGKT LSHLWQ  KERLAIGDRSC N APS RGR  N LTAKA
Sbjct:  238 AWDTKESTVAVLGHRRWVEKAGRD-----IVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSYRGRAVNGLTAKA 310

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig62364.16965.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig62364.16965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JD24_9PHAE	2.820e-24	67.06	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L729_9PHAE	3.620e-24	56.07	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JCQ0_9PHAE	4.680e-24	68.83	Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KJX4_9PHAE	5.990e-24	66.67	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JE77_9PHAE	7.150e-24	64.77	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KSI5_9PHAE	9.980e-24	70.51	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K4W7_9PHAE	1.400e-23	62.50	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5LRL5_9PHAE	2.190e-23	69.23	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KVX2_9PHAE	2.190e-23	69.23	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JKC1_9PHAE	2.280e-23	67.95	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig62364	contig	Ecto-sp13_S_contig62364:253..769 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	518
Hectar predicted targeting category	other localisation
Exons	1
Cds size	249

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463868.1386867-UTR-Ecto-sp13_S_contig62364:252..520	1681463868.1386867-UTR-Ecto-sp13_S_contig62364:252..520	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig62364 253..520 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463868.1499271-CDS-Ecto-sp13_S_contig62364:520..769	1681463868.1499271-CDS-Ecto-sp13_S_contig62364:520..769	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig62364 521..769 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig62364.16965.1	prot_Ecto-sp13_S_contig62364.16965.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig62364 521..769 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig62364:253..769+
coding sequence from alignment at Ecto-sp13_S_contig62364:253..769+

protein sequence of mRNA_Ecto-sp13_S_contig62364.16965.1

>prot_Ecto-sp13_S_contig62364.16965.1 ID=prot_Ecto-sp13_S_contig62364.16965.1|Name=mRNA_Ecto-sp13_S_contig62364.16965.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
MANRSFPPCQRWLNNVFPNLSILPISLLPSSLPAFATPFLCPSTANAFSW
LSHAQTSPCTFLLLFPAQSCTLHSPSCTTDVPR

mRNA from alignment at Ecto-sp13_S_contig62364:253..769+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig62364.16965.1 ID=mRNA_Ecto-sp13_S_contig62364.16965.1|Name=mRNA_Ecto-sp13_S_contig62364.16965.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=517bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62364:253..769+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGGCGAACTACTCCCGACTGGCGAGAGATGCAATGGATGCCTACACTG
GTCCTGTGGATGCCGACGTGGCAGAGTGAGTTGTACAGCGACAAATTGTA
ACACGAGGACATTCGCTTCCGCGCCCCATCAGGGAATGCTGTCGCACGTA
TGGTGTGCTGTCTGTCGGGGGGGAGGCGTACTCTTATTGGTTCCGTGCCT
TAGCGGTTAGGTCATTGGCAACGCGTCCTCGAGAGGACGGAGCCCTGTTC
CGACAAGACCGGTCACCGATGGCCAATCGTTCCTTCCCACCTTGCCAAAG
GTGGCTCAATAATGTCTTCCCTAATCTATCCATCCTACCGATTTCACTTC
TACCTTCATCACTTCCCGCCTTTGCAACGCCCTTCCTATGCCCCAGTACT
GCCAACGCCTTCTCCTGGCTATCCCATGCCCAAACATCTCCGTGCACCTT
TCTCCTACTTTTCCCAGCTCAGTCATGTACACTTCACTCTCCTTCTTGTA
CCACCGATGTTCCGCGA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62364:253..769+

>mRNA_Ecto-sp13_S_contig62364.16965.1 ID=mRNA_Ecto-sp13_S_contig62364.16965.1|Name=mRNA_Ecto-sp13_S_contig62364.16965.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62364:253..769+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAATCGTTCCTTCCCACCTTGCCAAAGGTGGCTCAATAATGTCTT
CCCTAATCTATCCATCCTACCGATTTCACTTCTACCTTCATCACTTCCCG
CCTTTGCAACGCCCTTCCTATGCCCCAGTACTGCCAACGCCTTCTCCTGG
CTATCCCATGCCCAAACATCTCCGTGCACCTTTCTCCTACTTTTCCCAGC
TCAGTCATGTACACTTCACTCTCCTTCTTGTACCACCGATGTTCCGCGA