mRNA_Ecto-sp13_S_contig6236.16964.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6236.16964.1
Unique NamemRNA_Ecto-sp13_S_contig6236.16964.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6236.16964.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 5.300e-32
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 1 
Query:    4 AGEAVIDGGDAVVLFHVNDGSTLELDGLSLVRGVATYSPTYSYGSGGAVYLGGDECMLTASSCSFVGNNAVDSGGML 234
            AGEAVIDGGDAVVLF+VNDGSTLELD LSLVRGVATY+ TYSYG GGAV L  D+C+LTASSCSF+GNNA+DSGG +
Sbjct:   83 AGEAVIDGGDAVVLFNVNDGSTLELDALSLVRGVATYTATYSYGGGGAVILRSDDCILTASSCSFIGNNAIDSGGAI 159
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6236.16964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWI3_9PHAE5.300e-3281.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6236contigEcto-sp13_S_contig6236:7025..7258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size234
Hectar predicted targeting categoryother localisation
Exons1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463868.1085083-CDS-Ecto-sp13_S_contig6236:7024..72581681463868.1085083-CDS-Ecto-sp13_S_contig6236:7024..7258Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6236 7025..7258 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6236.16964.1prot_Ecto-sp13_S_contig6236.16964.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6236 7025..7258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6236.16964.1

>prot_Ecto-sp13_S_contig6236.16964.1 ID=prot_Ecto-sp13_S_contig6236.16964.1|Name=mRNA_Ecto-sp13_S_contig6236.16964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
GAGEAVIDGGDAVVLFHVNDGSTLELDGLSLVRGVATYSPTYSYGSGGAV
YLGGDECMLTASSCSFVGNNAVDSGGML
back to top

mRNA from alignment at Ecto-sp13_S_contig6236:7025..7258+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6236.16964.1 ID=mRNA_Ecto-sp13_S_contig6236.16964.1|Name=mRNA_Ecto-sp13_S_contig6236.16964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6236:7025..7258+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGCGGGGGAAGCAGTGATCGACGGTGGCGATGCCGTCGTGCTCTTCCA
CGTCAACGATGGTTCAACGCTGGAACTCGATGGGCTGTCCCTCGTGCGTG
GGGTGGCTACATATTCGCCGACCTACTCCTATGGGAGCGGCGGAGCGGTG
TACCTTGGAGGCGACGAGTGTATGCTGACTGCTTCCAGTTGCTCGTTTGT
CGGCAACAACGCAGTAGACAGTGGAGGTATGCTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6236:7025..7258+

>mRNA_Ecto-sp13_S_contig6236.16964.1 ID=mRNA_Ecto-sp13_S_contig6236.16964.1|Name=mRNA_Ecto-sp13_S_contig6236.16964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6236:7025..7258+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGCGGGGGAAGCAGTGATCGACGGTGGCGATGCCGTCGTGCTCTTCCA
CGTCAACGATGGTTCAACGCTGGAACTCGATGGGCTGTCCCTCGTGCGTG
GGGTGGCTACATATTCGCCGACCTACTCCTATGGGAGCGGCGGAGCGGTG
TACCTTGGAGGCGACGAGTGTATGCTGACTGCTTCCAGTTGCTCGTTTGT
CGGCAACAACGCAGTAGACAGTGGAGGTATGCTA
back to top