mRNA_Ecto-sp13_S_contig623.16957.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig623.16957.1
Unique NamemRNA_Ecto-sp13_S_contig623.16957.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig623.16957.1 vs. uniprot
Match: D7FNK9_ECTSI (YCII-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK9_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 1.090e-74
Identity = 110/116 (94.83%), Postives = 110/116 (94.83%), Query Frame = 2 
Query:    2 KHLYAIHCLDDQSCGKADGEPRGGSAKRMGNYPAHKEYQAATANPEDPRFINKVSAGPLVDEVDDCMIGSFFLVAATREEAQKFVDNDPFKKARTAFTISLERYVSVVGVKPHSGN 349
            KHLYAIHCLDDQSCGKADGEPRGGSAKRMGNYPAHKEYQAATANPEDPRFINKVSAGPLVDEVDD MIGSFFLVAATREEAQKFVDNDPFKK     TISLERYVSVVGVKPHSGN
Sbjct:    5 KHLYAIHCLDDQSCGKADGEPRGGSAKRMGNYPAHKEYQAATANPEDPRFINKVSAGPLVDEVDDYMIGSFFLVAATREEAQKFVDNDPFKKEGVWSTISLERYVSVVGVKPHSGN 120
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BLAST of mRNA_Ecto-sp13_S_contig623.16957.1 vs. uniprot
Match: A0A7S2V359_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V359_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.580e-31
Identity = 59/116 (50.86%), Postives = 78/116 (67.24%), Query Frame = 2 
Query:    2 KHLYAIHCLDDQSCGKADGEPRGGSAKRMGNYPAHKEYQAATANPEDPRFINKVSAGPLVDEVDDCMIGSFFLVAATREEAQKFVDNDPFKKARTAFTISLERYVSV-VGVKPHSG 346
            K L+ IHC+DD S    DGE  GGS KRM  Y  HK YQ ATANPE+P +I K++AGPL+ +    MIGS F+V +T+EEA  F +NDPF KA    ++++ RYVS+  G+  H+G
Sbjct:   50 KQLWLIHCVDDDSSPLEDGETFGGSGKRMAVYAEHKVYQGATANPENPEYIRKLAAGPLLTDEGTHMIGSTFIVESTKEEAIAFNENDPFAKAGVWKSVNISRYVSIPAGLIAHAG 165
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig623.16957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNK9_ECTSI1.090e-7494.83YCII-related n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A7S2V359_9STRA3.580e-3150.86Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig623contigEcto-sp13_S_contig623:16491..18941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size354
Hectar predicted targeting categoryother localisation
Exons3
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463867.0655675-CDS-Ecto-sp13_S_contig623:16490..165991681463867.0655675-CDS-Ecto-sp13_S_contig623:16490..16599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig623 16491..16599 +
1681463867.086619-CDS-Ecto-sp13_S_contig623:16906..170881681463867.086619-CDS-Ecto-sp13_S_contig623:16906..17088Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig623 16907..17088 +
1681463867.1035182-CDS-Ecto-sp13_S_contig623:18880..189401681463867.1035182-CDS-Ecto-sp13_S_contig623:18880..18940Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig623 18881..18940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig623.16957.1prot_Ecto-sp13_S_contig623.16957.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig623 16491..18940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig623.16957.1

>prot_Ecto-sp13_S_contig623.16957.1 ID=prot_Ecto-sp13_S_contig623.16957.1|Name=mRNA_Ecto-sp13_S_contig623.16957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
KTPLRNTLPGRSVLWQGRWRTSRRLGQADGKLPCAQGIPGSDGKPGRSAV
HQQGVGGALGRRSRRLHDRQFLLGGGHTRGSSEICGQRPFQEGKNCFYNQ
LGALRVGCRGQAAFRQL
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mRNA from alignment at Ecto-sp13_S_contig623:16491..18941+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig623.16957.1 ID=mRNA_Ecto-sp13_S_contig623.16957.1|Name=mRNA_Ecto-sp13_S_contig623.16957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2451bp|location=Sequence derived from alignment at Ecto-sp13_S_contig623:16491..18941+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAACACCTCTACGCAATACACTGCCTGGACGATCAGTCTTGTGGCAAGG
CAGATGGAGAACCTCGAGGAGGCTCGGCCAAGCGGATGGGAAATTACCCT
GCGCACAAGGTGTGTGATGGTACCGACTGCGGGCAATATTGCTAGGGCGG
GCAAAGGGAGGGTAAGCGCGCGGTGGTGCAGTCATGGCCTCAATTGTCAC
CAGACCTCTTATTTTTGCTGGATAAGCAGAGTCCACAGGCGTCCCTGAGC
CTCTACACTCAGGGGTGGACGGTGAGGAAAAATTTGCGATCGGTCTTGAC
TACCACAAGACGGAAATTTGTTTATTATCTAGTCCGCTATCTTGGCGTAC
ACGTAAGCATATGAGCGCTGAACAACTCTTTGTTGGTAACGGGTTCTCGA
ACTCGGACCCCGGCAGGAATACCAGGCAGCGACGGCAAACCCGGAAGATC
CGCGGTTCATCAACAAGGTGTCGGCGGGGCCCTTGGTCGACGAAGTCGAC
GACTGCATGATCGGCAGTTTCTTCTTGGTGGCGGCCACACGAGAGGAAGC
TCAGAAATTTGTGGACAACGACCCTTTCAAGAAGGCAAGAACTGCTTTGT
CGTTTATAGCCTCAACAACCTATGAACAACAGTCGTGTACCGTTGCGAGT
TCTGAAAGATGATATCACCAAGACCCACGCACAGCTAAGATCATATGTGT
GCAGGTCCGCCATGATGCGCTGTTTTGACGATGACGGTCTTCTCAGACCC
CGTGCCACGACACCAAACAGTGGATCGAAAATCAAAACCAACGAATATTC
ATCACGAACTAATCACGATGCGCGCGACAAGCCTCCATTTGGAAGAGGTT
TGGTTACGAGTTCAGCGCGCTTTGCGCTTGAAGCACGTTTTTTTCGTGTA
GAGACAGGACGTCGTTGGGGTTGTTTGGCTAATATTCCACGCTTGGCACT
CAGACCACGTTGTGTTCTCTCTGCACGTCGCCTGTTGATGCTGCTACAGG
TCGATGCACAGCAATTTGTCCATTCACATTTTGTGCGACAACTTTTTAAA
GAAAAATGTTTGAAACGAGAACAACGATATTCGTGATCGCCTCGTCAAGG
TTCGTCGATAGCTGCAGAGTTTTTTTCGTTTTGGGAAATTGCAACATTTT
TGGGCAAAATGCACACGGAGCCCCCATTCAACTCCTATATCACCACGGTG
CCCCCCGTTTTCCATTGGAGAGCCCCCTGTGTCACCACGTTGCCCCCTAT
TTTCCACTGCCGAGCCCCCTATAATATCACAACGTTGACCCCTATTTTAC
GCCACACTGCCCCAATTTGATGCCACGGAATCCCCCTTCTGAAATTTCCC
CTCGTCCACACACTTTTATTCGTAACTGATCGCACACCAACAATTCGATA
ATCAAGCAATGACGAAAACACGTACATGTGCAGTCTGTTCGCATGCTCAT
GTTGCTGCGCCAGCTTCGGCTTCTCTTGGAAGCCGCCTCGCCATCGGCTC
CGCGACTGCCGATCTTCTTCTTAGGTCGTCCCTTTGGGTTCCCCATGGTG
CTTGCGCGCTTGTTTTTTGTTCTTCGGGCTGCCGTGTGCGGTTTGTGGTG
TGTCGCCCAGCAGAAAAATCATCCATGGTGCGGCACAAGAAAATAAAGAA
ATATGTAAACAAATTTTTCCCCAGCAAACAACACAAACGACCATCTTGAG
ACTGATCAAAGGGATCGCTTGCCGCTGTTAATTTTGAAATCGATCGGTTG
GTTGTCGCGCTGTAAACGAAATAAGTTTTCCGTTTTTTCGGGGATAAACA
GTCAAGGAAAAAGAAAAAAACTCTCCGTCACGCCATGCGCCTGGAAACAG
GGCGTTTGCCTGTACTTTCTGATTTCGGAACAACTACCTGTGCGCAGAGA
AAAGTTGTCATTTGTGCTGGGAAAAACACGGGTTTTTTGTGCACGGACAT
GATCCATTACAGCACTCCTTTGCCGTAAGGCACACCCGTACTGACTCTTA
TCAACGGGTACAAGTGGAGTGTGTGTGCACGGCACTAGCTCTGCAGTTGG
ATAGCGCAGTTCTACGCGTCAACTTGCCACGTGTTCAGTTGTGCTGACTG
GTAGAGCAGCTGGCAACAAAGCCGTCGAACTATCAATCAGTCCGCTACCA
TCATAGCGATGAACGACAACGCATACGAACCACAGATCGTAGGTGTTGCT
TTCCGCTGCTACTGCTGCTGCACTTGCTACGACACAACCGTCACGAGCTT
GACACCGATACAAGAAGAAACCACACCATGTGTTTGTAGCGTCCATCCGT
TGCTTTCTGATCCGACCCACTTGCATTTCTGTTTTTGACTGGCGTCCCGC
GTCGTACCGCAACAAACCACCAACAGGAAGGCGTTTGGAGTACAATCAGC
TTGGAGCGTTACGTGTCGGTTGTCGGGGTCAAGCCGCATTCCGGCAACTT
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig623:16491..18941+

>mRNA_Ecto-sp13_S_contig623.16957.1 ID=mRNA_Ecto-sp13_S_contig623.16957.1|Name=mRNA_Ecto-sp13_S_contig623.16957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig623:16491..18941+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAACACCTCTACGCAATACACTGCCTGGACGATCAGTCTTGTGGCAAGG
CAGATGGAGAACCTCGAGGAGGCTCGGCCAAGCGGATGGGAAATTACCCT
GCGCACAAGGAATACCAGGCAGCGACGGCAAACCCGGAAGATCCGCGGTT
CATCAACAAGGTGTCGGCGGGGCCCTTGGTCGACGAAGTCGACGACTGCA
TGATCGGCAGTTTCTTCTTGGTGGCGGCCACACGAGAGGAAGCTCAGAAA
TTTGTGGACAACGACCCTTTCAAGAAGGCAAGAACTGCTTTTACAATCAG
CTTGGAGCGTTACGTGTCGGTTGTCGGGGTCAAGCCGCATTCCGGCAACT
T
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