mRNA_Ecto-sp13_S_contig62280.16955.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62280.16955.1
Unique NamemRNA_Ecto-sp13_S_contig62280.16955.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig62280.16955.1 vs. uniprot
Match: D7G6H0_ECTSI (DENN (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6H0_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.870e-22
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1
Query:    4 KVIVVSENLGLLSSAVLALAALTRPLLWVHPLVPVMPIDMAEVLSAPVPYLIG 162
            +VIVVSENLGLLSSAVLALAALTRPLLWVHPLVPVMPIDMAEVLSAPVPYLIG
Sbjct:  950 QVIVVSENLGLLSSAVLALAALTRPLLWVHPLVPVMPIDMAEVLSAPVPYLIG 1002          
BLAST of mRNA_Ecto-sp13_S_contig62280.16955.1 vs. uniprot
Match: A0A6H5LDK4_9PHAE (DENN domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDK4_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 8.890e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 1
Query:    4 KVIVVSENLGLLSSAVLALAALTRPLLWVHPLVPVMPIDMAEVLSAPVPYLIG 162
            +VIVVSE+LGLLSSAVLALAALTRPLLWVHPLVPVMPIDMAEVLSAPVPYLIG
Sbjct: 1383 QVIVVSEDLGLLSSAVLALAALTRPLLWVHPLVPVMPIDMAEVLSAPVPYLIG 1435          
BLAST of mRNA_Ecto-sp13_S_contig62280.16955.1 vs. uniprot
Match: A0A7S3XJI2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJI2_HETAK)

HSP 1 Score: 63.2 bits (152), Expect = 3.870e-10
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    4 KVIVVSENLGLLSSAVLALAALTRPLLWVHPLVPVMPIDMAEVLSAPVPYLIG 162
            +VIVV E+LGLLS+  L LA+L RPLLWV PL+PV+P  M   L APVP+L G
Sbjct:  100 QVIVVGEDLGLLSACTLGLASLLRPLLWVGPLIPVLPSKMHGYLDAPVPFLAG 152          
BLAST of mRNA_Ecto-sp13_S_contig62280.16955.1 vs. uniprot
Match: F0YAW2_AURAN (UDENN domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAW2_AURAN)

HSP 1 Score: 57.8 bits (138), Expect = 3.150e-8
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    4 KVIVVSENLGLLSSAVLALAALTRPLLWVHPLVPVMPIDMAEVLSAPVPYLIG 162
            +V+V+S +    ++AVL LAAL RPLLWV PLVPV+P  +  +L APVP+L+G
Sbjct:  455 QVVVISRDPARGAAAVLGLAALARPLLWVGPLVPVLPAQLHALLEAPVPFLVG 507          
BLAST of mRNA_Ecto-sp13_S_contig62280.16955.1 vs. uniprot
Match: L8HJX0_ACACA (DENN (AEX-3) domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HJX0_ACACA)

HSP 1 Score: 57.0 bits (136), Expect = 5.870e-8
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    7 VIVVSENLGLLSSAVLALAALTRPLLWVHPLVPVMPIDMAEVLSAPVPYLIGERECQ 177
            VIVV ENLG+LS  +L++A L RP +W    +P++P  + EV+ +PVPYL+G +  +
Sbjct:  437 VIVVCENLGVLSCIMLSMATLLRPFVWQGVFIPILPAGLIEVIESPVPYLVGVQRLE 493          
BLAST of mRNA_Ecto-sp13_S_contig62280.16955.1 vs. uniprot
Match: A0A329SJP6_9STRA (UDENN domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329SJP6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.110e-7
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    4 KVIVVSENLGLLSSAVLALAALTRPLLWVHPLVPVMPIDMAEVLSAPVPYLIGERE 171
            KVIVVS+ + LLSS+ L +A+L  PL+W  PL+ V+P+ M E + APVP + G  E
Sbjct:  442 KVIVVSDEIPLLSSSTLGMASLLHPLVWAGPLISVLPLSMHEYMEAPVPLICGVDE 497          
BLAST of mRNA_Ecto-sp13_S_contig62280.16955.1 vs. uniprot
Match: A0A1R2BS31_9CILI (UDENN domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BS31_9CILI)

HSP 1 Score: 55.8 bits (133), Expect = 1.490e-7
Identity = 26/54 (48.15%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 EKVIVVSENLGLLSSAVLALAALTRPLLWVHPLVPVMPIDMAEVLSAPVPYLIG 162
            + ++VVS NL L++S VL+L +L +PL+W H ++P++P  + E+L APVP LIG
Sbjct:  370 KSIVVVSCNLALITSVVLSLRSLIKPLIWPHVVLPIVPDSLRELLEAPVPLLIG 423          
BLAST of mRNA_Ecto-sp13_S_contig62280.16955.1 vs. uniprot
Match: A0A0P1B469_PLAHL (RAS signaling inhibitor ST5 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B469_PLAHL)

HSP 1 Score: 54.7 bits (130), Expect = 3.840e-7
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    4 KVIVVSENLGLLSSAVLALAALTRPLLWVHPLVPVMPIDMAEVLSAPVPYLIGERE 171
            K+IVVS+++ LLSS+ L  A+L  PL+W  PL+ V+P  M E + APVP++ G  E
Sbjct:  425 KLIVVSDDIPLLSSSTLGFASLLHPLVWAGPLISVLPPSMHEFMEAPVPFICGVTE 480          
BLAST of mRNA_Ecto-sp13_S_contig62280.16955.1 vs. uniprot
Match: A0A067D8K6_SAPPC (UDENN domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D8K6_SAPPC)

HSP 1 Score: 54.7 bits (130), Expect = 3.870e-7
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    4 KVIVVSENLGLLSSAVLALAALTRPLLWVHPLVPVMPIDMAEVLSAPVPYLIGERE 171
            KV+VV ++L +L+S VL L +L  PL W  P++ V+P  + E L APVP+LIG +E
Sbjct:  424 KVVVVCDDLEVLTSTVLGLVSLLAPLTWAGPVIAVLPATLLEYLEAPVPFLIGVQE 479          
BLAST of mRNA_Ecto-sp13_S_contig62280.16955.1 vs. uniprot
Match: T0R5L0_SAPDV (UDENN domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R5L0_SAPDV)

HSP 1 Score: 54.7 bits (130), Expect = 3.870e-7
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    4 KVIVVSENLGLLSSAVLALAALTRPLLWVHPLVPVMPIDMAEVLSAPVPYLIGERE 171
            KV+VV ++L +L+S VL L +L  PL W  P++ V+P  + E L APVP+LIG +E
Sbjct:  423 KVVVVCDDLEVLTSTVLGLVSLLSPLTWAGPVIAVLPTTLLEYLEAPVPFLIGVQE 478          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62280.16955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6H0_ECTSI1.870e-2298.11DENN (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5LDK4_9PHAE8.890e-2296.23DENN domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S3XJI2_HETAK3.870e-1062.26Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0YAW2_AURAN3.150e-854.72UDENN domain-containing protein n=1 Tax=Aureococcu... [more]
L8HJX0_ACACA5.870e-845.61DENN (AEX-3) domain containing protein n=1 Tax=Aca... [more]
A0A329SJP6_9STRA1.110e-750.00UDENN domain-containing protein n=3 Tax=Phytophtho... [more]
A0A1R2BS31_9CILI1.490e-748.15UDENN domain-containing protein n=1 Tax=Stentor co... [more]
A0A0P1B469_PLAHL3.840e-748.21RAS signaling inhibitor ST5 n=1 Tax=Plasmopara hal... [more]
A0A067D8K6_SAPPC3.870e-748.21UDENN domain-containing protein n=1 Tax=Saprolegni... [more]
T0R5L0_SAPDV3.870e-748.21UDENN domain-containing protein n=1 Tax=Saprolegni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62280contigEcto-sp13_S_contig62280:136..318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score99.0
Seed ortholog evalue8.2e-19
Seed eggNOG ortholog2880.D7G6H0
Model size183
KEGG koko:K18061
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.negative regulation of pancreatic amylase secretion
EggNOG OGsKOG3570@1,KOG3570@2759
Cds size183
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463867.0344102-CDS-Ecto-sp13_S_contig62280:135..3181681463867.0344102-CDS-Ecto-sp13_S_contig62280:135..318Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62280 136..318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62280.16955.1prot_Ecto-sp13_S_contig62280.16955.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62280 136..318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62280.16955.1

>prot_Ecto-sp13_S_contig62280.16955.1 ID=prot_Ecto-sp13_S_contig62280.16955.1|Name=mRNA_Ecto-sp13_S_contig62280.16955.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
EKVIVVSENLGLLSSAVLALAALTRPLLWVHPLVPVMPIDMAEVLSAPVP
YLIGERECQQ*
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mRNA from alignment at Ecto-sp13_S_contig62280:136..318+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62280.16955.1 ID=mRNA_Ecto-sp13_S_contig62280.16955.1|Name=mRNA_Ecto-sp13_S_contig62280.16955.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62280:136..318+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAAAGGTGATCGTCGTGAGCGAGAATTTGGGGCTCCTGTCCTCGGCCGT TCTCGCCCTCGCCGCGCTGACCCGGCCCCTCCTGTGGGTGCACCCGCTGG TGCCGGTGATGCCGATTGACATGGCTGAGGTGCTTTCAGCCCCGGTGCCG TATCTAATCGGTGAGAGAGAATGTCAGCAATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62280:136..318+

>mRNA_Ecto-sp13_S_contig62280.16955.1 ID=mRNA_Ecto-sp13_S_contig62280.16955.1|Name=mRNA_Ecto-sp13_S_contig62280.16955.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62280:136..318+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAAAGGTGATCGTCGTGAGCGAGAATTTGGGGCTCCTGTCCTCGGCCGT
TCTCGCCCTCGCCGCGCTGACCCGGCCCCTCCTGTGGGTGCACCCGCTGG
TGCCGGTGATGCCGATTGACATGGCTGAGGTGCTTTCAGCCCCGGTGCCG
TATCTAATCGGTGAGAGAGAATGTCAGCAATAG
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