mRNA_Ecto-sp13_S_contig62264.16952.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62264.16952.1
Unique NamemRNA_Ecto-sp13_S_contig62264.16952.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig62264.16952.1 vs. uniprot
Match: D8LGL6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGL6_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 5.750e-32
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1
Query:   22 QLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLS 180
            QLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLS
Sbjct:   30 QLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLS 82          
BLAST of mRNA_Ecto-sp13_S_contig62264.16952.1 vs. uniprot
Match: A0A6U3R2X0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3R2X0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.430e-16
Identity = 34/53 (64.15%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    1 RTACSSTQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGM 159
            RT      L E HEL+WDDGVA ET IDFDAPH+S SE FAWW GG  FF G+
Sbjct:   49 RTLAPQGSLHEEHELVWDDGVAAETCIDFDAPHISSSEGFAWWIGGFLFFLGV 101          
BLAST of mRNA_Ecto-sp13_S_contig62264.16952.1 vs. uniprot
Match: A0A7S2P129_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P129_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 7.890e-16
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 RTACSSTQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGM 159
            R    +T+L E+HEL+WDDGVAPE TIDFD+ H+S  E  AWW GGL FF G+
Sbjct:   39 RNLAPTTKLVEDHELVWDDGVAPELTIDFDSQHISTGEGLAWWLGGLGFFTGL 91          
BLAST of mRNA_Ecto-sp13_S_contig62264.16952.1 vs. uniprot
Match: A0A7S2C717_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C717_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.980e-15
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    1 RTACSSTQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLS 180
            RT      L E HELIWDDGVA ETT+DFDAPH+S  E  AWW GG  FF G+    T++
Sbjct:   50 RTLVPEGPLHEEHELIWDDGVAAETTLDFDAPHISKWEGLAWWFGGFGFFFGVYTFATVT 109          
BLAST of mRNA_Ecto-sp13_S_contig62264.16952.1 vs. uniprot
Match: K8YRF0_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YRF0_NANGC)

HSP 1 Score: 70.1 bits (170), Expect = 9.230e-14
Identity = 35/60 (58.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    1 RTACSSTQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLS 180
            RTA     L E HELIWDD VA E  IDFDA  +   EAF WW GG  FF G+LGLV L+
Sbjct:   50 RTAMPEGPLYEEHELIWDDRVAAEMCIDFDASFVPTREAFRWWLGGFGFFFGLLGLVALT 109          
BLAST of mRNA_Ecto-sp13_S_contig62264.16952.1 vs. uniprot
Match: A0A835ZFI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFI9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.080e-13
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   22 QLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLS 180
            +L E  EL+WDD VAPE  +DFDAPH+S ++   WW GGL FFA +  +V LS
Sbjct:   43 RLHEEQELMWDDSVAPELCLDFDAPHISRTQGLLWWLGGLGFFAAVFNIVKLS 95          
BLAST of mRNA_Ecto-sp13_S_contig62264.16952.1 vs. uniprot
Match: A0A4D9D035_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D035_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 6.490e-13
Identity = 32/52 (61.54%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   25 LDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLS 180
            L E HELIWDD VA E  IDFDA  +   EAF WW GG  FF G+LGLV L+
Sbjct:    6 LYEEHELIWDDRVAAEMCIDFDASFVPTREAFRWWLGGFGFFFGLLGLVALT 57          
BLAST of mRNA_Ecto-sp13_S_contig62264.16952.1 vs. uniprot
Match: A0A7S1FZR7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZR7_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.350e-12
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    1 RTACSSTQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGMLGLVTLS 180
            R      +L E+HEL+WDDGVAPE TIDFD PH S  +  A W GG+ FF  +  +V L+
Sbjct:   53 RNLAPQEKLHESHELMWDDGVAPELTIDFDVPHYSGEKGLAMWLGGIAFFVTLYQVVKLT 112          
BLAST of mRNA_Ecto-sp13_S_contig62264.16952.1 vs. uniprot
Match: A0A7S2XQC7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQC7_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.810e-12
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   16 STQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFFAGM 159
            S +L ENH+ +WDDGVAPE  +DFD  H+S +E  AWW GG  FF G+
Sbjct:   79 SEKLVENHDCVWDDGVAPELALDFDCQHVSSTEGLAWWLGGFGFFIGV 126          
BLAST of mRNA_Ecto-sp13_S_contig62264.16952.1 vs. uniprot
Match: A0A7R9ZHV7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZHV7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 8.580e-12
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:    1 RTACSSTQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFF 150
            R    + +L EN++ +WDDGVAPET +DFD  H+S  E  AWW GGL FF
Sbjct:   61 RIPAPTEKLVENNDAVWDDGVAPETALDFDCQHISSEEGLAWWLGGLGFF 110          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62264.16952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGL6_ECTSI5.750e-32100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U3R2X0_9STRA2.430e-1664.15Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2P129_9STRA7.890e-1660.38Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2C717_9STRA2.980e-1556.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
K8YRF0_NANGC9.230e-1458.33Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A835ZFI9_9STRA4.080e-1354.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9D035_9STRA6.490e-1361.54Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1FZR7_9STRA2.350e-1250.00Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2XQC7_9STRA2.810e-1256.25Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7R9ZHV7_9STRA8.580e-1254.00Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62264contigEcto-sp13_S_contig62264:3..182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score114.8
Seed ortholog evalue1.4e-23
Seed eggNOG ortholog2880.D8LGL6
Model size180
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2CYNQ@1,2S5CD@2759
Cds size180
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463866.7713587-CDS-Ecto-sp13_S_contig62264:2..1821681463866.7713587-CDS-Ecto-sp13_S_contig62264:2..182Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62264 3..182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62264.16952.1prot_Ecto-sp13_S_contig62264.16952.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62264 3..182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62264.16952.1

>prot_Ecto-sp13_S_contig62264.16952.1 ID=prot_Ecto-sp13_S_contig62264.16952.1|Name=mRNA_Ecto-sp13_S_contig62264.16952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
RTACSSTQLDENHELIWDDGVAPETTIDFDAPHMSMSEAFAWWGGGLTFF
AGMLGLVTLS
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mRNA from alignment at Ecto-sp13_S_contig62264:3..182-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62264.16952.1 ID=mRNA_Ecto-sp13_S_contig62264.16952.1|Name=mRNA_Ecto-sp13_S_contig62264.16952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62264:3..182- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAACGGCGTGCTCTTCTACACAGCTGGACGAGAACCACGAGCTGATCTG GGACGACGGCGTTGCGCCCGAGACGACCATCGACTTCGACGCGCCGCACA TGTCGATGTCGGAAGCGTTCGCGTGGTGGGGCGGGGGGTTGACCTTTTTC GCGGGCATGCTGGGACTGGTCACCCTGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62264:3..182-

>mRNA_Ecto-sp13_S_contig62264.16952.1 ID=mRNA_Ecto-sp13_S_contig62264.16952.1|Name=mRNA_Ecto-sp13_S_contig62264.16952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62264:3..182- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAACGGCGTGCTCTTCTACACAGCTGGACGAGAACCACGAGCTGATCTG
GGACGACGGCGTTGCGCCCGAGACGACCATCGACTTCGACGCGCCGCACA
TGTCGATGTCGGAAGCGTTCGCGTGGTGGGGCGGGGGGTTGACCTTTTTC
GCGGGCATGCTGGGACTGGTCACCCTGAGC
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