mRNA_Ecto-sp13_S_contig6226.16951.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6226.16951.1
Unique NamemRNA_Ecto-sp13_S_contig6226.16951.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6226.16951.1 vs. uniprot
Match: D8LSJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSJ7_ECTSI)

HSP 1 Score: 341 bits (875), Expect = 3.940e-110
Identity = 182/212 (85.85%), Postives = 183/212 (86.32%), Query Frame = 2 
Query:  659 LCK*DSFTEGSNGGGWGSXXXXXXQGDGRAGASSKWEQSKQKGDLGYYFAHHITMKELAPEDYQMNGPKLLSKGDTASAPNGARPNGSSSASSPSVTTRRRRPQQISSYSWEDYGEEVRLTFRQSEWEWAKVDAEEIEIEWGSRRFRMSIDSREYGLHTIDLQRLSGDVVGVRARKLKTRLVVALVKGGRRGSYSHRPAWSKLQAALEKPSD 1294
            +C  DSFTEGSNGGG   XXXX  QGD RA ASSKWEQSKQKGDLGYYFAHHITMKELAPEDYQMNGPKLLSKGDT SAPNGARPNGS              PQQISSYSWEDYGEEVRLTFRQSEWEWAKVD EEIEIEWGSRRFRMSIDSREYGLHTIDLQRLSG V GV ARKLKTRLVVALVKGGRRGSYSH PAWSKLQAALEKPSD
Sbjct:   59 VCMQDSFTEGSNGGGXXXXXXXTGQGDRRAAASSKWEQSKQKGDLGYYFAHHITMKELAPEDYQMNGPKLLSKGDTTSAPNGARPNGSXXXXXXXXXXXXXXPQQISSYSWEDYGEEVRLTFRQSEWEWAKVDVEEIEIEWGSRRFRMSIDSREYGLHTIDLQRLSGVVAGVTARKLKTRLVVALVKGGRRGSYSHSPAWSKLQAALEKPSD 270
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BLAST of mRNA_Ecto-sp13_S_contig6226.16951.1 vs. uniprot
Match: A0A6H5L1W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W9_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 3.350e-30
Identity = 60/73 (82.19%), Postives = 63/73 (86.30%), Query Frame = 2 
Query:  659 LCK*DSFTEGSNGGGWGSXXXXXXQGDGRAGASSKWEQSKQKGDLGYYFAHHITMKELAPEDYQMNGPKLLSK 877
            +C  DSFT+GS+GGGWGS      QGDG A ASSKWEQSKQKGDLGYYFAHHITMKELAPEDYQMNGPKLLSK
Sbjct:   59 VCVQDSFTQGSHGGGWGSSASSTGQGDGPAAASSKWEQSKQKGDLGYYFAHHITMKELAPEDYQMNGPKLLSK 131
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6226.16951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSJ7_ECTSI3.940e-11085.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1W9_9PHAE3.350e-3082.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6226contigEcto-sp13_S_contig6226:4942..8438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1932
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_001900.1
Cds size477
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463866.699587-UTR-Ecto-sp13_S_contig6226:4941..55761681463866.699587-UTR-Ecto-sp13_S_contig6226:4941..5576Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6226 4942..5576 -
1681463866.7406785-UTR-Ecto-sp13_S_contig6226:7618..84381681463866.7406785-UTR-Ecto-sp13_S_contig6226:7618..8438Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6226 7619..8438 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463866.7139587-CDS-Ecto-sp13_S_contig6226:5576..57571681463866.7139587-CDS-Ecto-sp13_S_contig6226:5576..5757Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6226 5577..5757 -
1681463866.7230098-CDS-Ecto-sp13_S_contig6226:6124..63631681463866.7230098-CDS-Ecto-sp13_S_contig6226:6124..6363Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6226 6125..6363 -
1681463866.7318795-CDS-Ecto-sp13_S_contig6226:7561..76181681463866.7318795-CDS-Ecto-sp13_S_contig6226:7561..7618Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6226 7562..7618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6226.16951.1prot_Ecto-sp13_S_contig6226.16951.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6226 5577..7618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6226.16951.1

>prot_Ecto-sp13_S_contig6226.16951.1 ID=prot_Ecto-sp13_S_contig6226.16951.1|Name=mRNA_Ecto-sp13_S_contig6226.16951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
MKELAPEDYQMNGPKLLSKGDTASAPNGARPNGSSSASSPSVTTRRRRPQ
QISSYSWEDYGEEVRLTFRQSEWEWAKVDAEEIEIEWGSRRFRMSIDSRE
YGLHTIDLQRLSGDVVGVRARKLKTRLVVALVKGGRRGSYSHRPAWSKLQ
AALEKPSD*
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mRNA from alignment at Ecto-sp13_S_contig6226:4942..8438-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6226.16951.1 ID=mRNA_Ecto-sp13_S_contig6226.16951.1|Name=mRNA_Ecto-sp13_S_contig6226.16951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3497bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6226:4942..8438- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCCTGGTTTAGCGACCGATAGTCGCTATTGAGGCTATCGGTTTAGCGA
CAACTGGTCGCTAAACCGGGTTTGGCGACATGCCCTGAATAGCAACCATA
TTTCGTCGTGACACTAGGGGTCGCTAAATCGGGGCCCCCGCTGCACTCGG
TATTCTTGACACCGTTGTCGATCACTTCATGCAAGTATTGGATTGGATGA
GGGCTGGCACGTCCAGGGTGAGGAGGGCCCACATCAACACCACGGATACC
ACCAGCAGCATGGCGAGTCATTGATTTTATCTGCGCACATAGCTTAGCCG
CCAGCAGTGGCTGTTTCACGACTTTCATTACAAAAAAGTTTTAGAGATAA
CTTGAACTCCTCCCTCTTGTTGTGCAGATGTGGGCAGACCCCCCTCAACC
ATAGGTGTCAGCCGGCCAACGGCTCTTTTGCCCGGGAGGTAAACGTTAAG
CGCGGCTGACATGTTGTGACGATCGCACGTGTATGTACATATGTATTATA
GCACATGTTTAAGACACCCGTTTGAACAATTGTTGTCGGGGCATTAACGC
ACACACACATGAGATCCGAACATTTCAGCTAAACGTCACCGTTTTGCTCT
CGAGTCTCCCTCTGCATGATGATCACTGCGCATGCTGAGCGCTGACTACC
TTTGCCACTTGTGCAAGTAGGATTCTTTCACGGAGGGCTCAAATGGCGGC
GGATGGGGGTCGTCCTCTTCATCAACAGGACAGGGGGACGGGCGAGCCGG
GGCAAGCAGCAAGTGGGAGCAGAGCAAGCAGAAGGGAGATCTGGGTTACT
ACTTCGCTCACCACATCACCATGAAGGAGCTCGCCCCAGAAGATTACCAA
ATGAACGGCCCGAAACTGCTCAGCAAAGTAAGTATACACAAGGACAGCAG
TGCAGAACCTCTCGTGTAACTGTTTGAATTGAAACGTCCTGTCATTTGTC
CTTTTCTTTATTGATTTTCAGTCAAACTCGATGTCTTGTCGGACGCTGTC
TTGTGCAAGGAAAAATATGGGCGTCCTTGTACAATGGTGTATACTTGCAA
ATAGTGATAGTTTTGGGCGACGTCATGGGTTTACTTGTTGTTGGGCATGG
GGAGCGGTCTCATCCCCTTTGTTCGTTTGTCAGCGTTCAACTCTCAGCGC
AAGTTTCCGGAGAAAGTAGCCATGTTCCTCTTCCAAGTCCTAAGTGTGAA
CGGCATTTCACACTCCGTCCGATCACCTTCAGCGCGACCCGTGAGTCCCC
ATTGCCTCGTGTCGATTAGCTTCCAGAGTTTGGCAGACGTTGCACTGGTG
ACACTGAAGTCTTTGGTTCAGGAGTCCACGATATTTCTGTTGAGCCCGTG
GGAGTCATGGCGGCGCTGCACGACTCGCAGGCCTGTAGCATCCAAGTCCT
TGTGACATGTAACAGCAGTTCCGCCCTTCCGCAGTTTGGAAGCGAGTTCG
CTTTCATCGAGCTCTACGCGTTGCGAACGCTAGCTCGGATTCTGGTGTAG
CTCCCGGACTTGTATCGATCTACGCAAATAGCACCCAGAAACAAAGCGCT
ACTCGATTACCTTCTGCATTCAAATCAACCACGGCGATCACAGCATCTCC
AGCTGGGATGTGTGAGGGTCGAGTTGTGCTGAAACAATGGTCGCGGGCAC
TTACATCCGCTCTGGTTTTGCCGGTGTTGTTGTCTTGATCGTTTCACGAT
CTGAGCTACTGGTTCAACATGCAACTAATGTGATTCGGGGAAGGAAGGCT
TGTGTCAGCAATGCAAATCTGTAGCACGTTTTTGTCGCAAGGACTGAGAC
CCTAGATACCATGCATAGTTGGCCAGTTTTTTCCGCGGTGGATTGGTACT
ATCGGGAGTCTGAGATAAGTCTGGGAGTGGTGCAGCGCCGCCTTGATTTC
CGCATGCAGGTTGCACTCTGCCCTTGATCAGGCCCGCACAGCCTTCTCTT
AACAGTACACCAATCGCTCTTCATCTTGCTCCTCCTGTACGGAGTGAAAA
CATTTCACATAGCATGCTCATGCCGTCCCTCCACCCACTCGTCGCGTGCA
CACGATCCCGGCGTGTCAACAACAGGGCGATACCGCCTCCGCACCCAACG
GCGCAAGACCCAATGGGAGCTCTTCCGCGTCTTCCCCTTCGGTGACGACG
CGGCGTCGCCGGCCTCAACAAATCTCGTCCTACTCTTGGGAGGACTACGG
CGAGGAAGTCCGGCTCACATTTAGGCAATCCGAGTGGGAGTGGGCCAAGG
TGGACGCGGAAGAGATAGAGATAGAGTGGGGCTCTCGGCGGTTCCGGATG
TCCATCGACAGCAGGTATGCATATTCTCCTGCACGGAGCCTTTGATGTAT
TGTTCGAGTCTTGACAGTAGTATCTTGAACGAGGCGGCCTGCGTATTGCT
GTGAGTTTCACTAGTGCGGAGGTCCTCCTCGTTTGGACACAGTCATACGC
TCTTCTTCAGGACCTGCCCTCCGGTTTTGTGAAGGGCGCTGTAGAGGAAA
CACGATCTCCTGTGAAGTGGAATCCAGTGCAGTTTCGACGCAATTGCCTG
TTGTTGATCCGGAGCCCGTAGCGAAGTCGCGGTCAAAGCGCGCGTTGTTG
ACGTGAATAATCGTACAGGTACATCGCAACCTCCTCTCAAGTCATATCCC
GCACGCACTCTTCCCCACGAAACCGTTTCAGAGAGTACGGCCTCCACACG
ATTGACCTCCAGAGGTTGAGCGGCGATGTGGTAGGGGTTAGGGCTCGGAA
GCTCAAGACCAGGCTAGTCGTCGCCCTCGTGAAAGGGGGACGACGGGGAA
GCTACAGCCACAGGCCGGCTTGGAGCAAGCTGCAAGCAGCTCTCGAAAAA
CCCAGCGACTGATGGCGCGGTGGGATATGATGGTGGCGGTTGTTGGTGTC
AGTGCACTGAGCTGCAGTGTGTCGTGTTGATTCATAGCTGGTACTACGAA
AGGCCACTTCATAGCTGGGTGGGGGTGCTTGATGGGTCTCATGTTGTCCG
TACAGTGTGATTTGGGTGGGGCCCTGATATTGAATGTATTGCTGTCTGCC
GTGCGCGTGCCGCGTGGTCGCGGGTTAGACAACGTCGCTGGTGTTTTTAA
ACGTGTGCAGTCATTCGGAGCGAGGGAGGGTTTCTTGCAAGCCCTGGTCT
CGCCTTTTCAGTCCGAGCTGGGCGTGTGCTGCGCAATAACCGCGCGCATA
CGCACGAAGAGGAGGACTGGGGGTCGTTGTACCGCTCGCGACCCGACACG
TCTCTGCTTTCTACCACTTCAATTCGCGCCTTCGCCGACTGCGGCAAGAA
ATACGAGTCATTGGTGGTGAATATGGTGACCTCTTTTCCCAGAACGCAAT
ATTCTCATCTTCTGGATCTCGTGACCGATTTGAACGAAACCAATGCGCGA
GCCATTCGCCCATGAAAGCAACAACATTAGCAACAACACATACCCGCACC
CCAAACACGCCACCGGTAAAGCGTTTGCAACGTTTCTTCGTGTACTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6226:4942..8438-

>mRNA_Ecto-sp13_S_contig6226.16951.1 ID=mRNA_Ecto-sp13_S_contig6226.16951.1|Name=mRNA_Ecto-sp13_S_contig6226.16951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6226:4942..8438- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGAGCTCGCCCCAGAAGATTACCAAATGAACGGCCCGAAACTGCT
CAGCAAAGGCGATACCGCCTCCGCACCCAACGGCGCAAGACCCAATGGGA
GCTCTTCCGCGTCTTCCCCTTCGGTGACGACGCGGCGTCGCCGGCCTCAA
CAAATCTCGTCCTACTCTTGGGAGGACTACGGCGAGGAAGTCCGGCTCAC
ATTTAGGCAATCCGAGTGGGAGTGGGCCAAGGTGGACGCGGAAGAGATAG
AGATAGAGTGGGGCTCTCGGCGGTTCCGGATGTCCATCGACAGCAGAGAG
TACGGCCTCCACACGATTGACCTCCAGAGGTTGAGCGGCGATGTGGTAGG
GGTTAGGGCTCGGAAGCTCAAGACCAGGCTAGTCGTCGCCCTCGTGAAAG
GGGGACGACGGGGAAGCTACAGCCACAGGCCGGCTTGGAGCAAGCTGCAA
GCAGCTCTCGAAAAACCCAGCGACTGA
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