mRNA_Ecto-sp13_S_contig6225.16950.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6225.16950.1
Unique NamemRNA_Ecto-sp13_S_contig6225.16950.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6225.16950.1 vs. uniprot
Match: A0A6H5JY03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY03_9PHAE)

HSP 1 Score: 1005 bits (2599), Expect = 0.000e+0
Identity = 537/680 (78.97%), Postives = 558/680 (82.06%), Query Frame = 3
Query:  564 MFGSENLDPSGFEQLCKNYAVEKIHGKFLQDEVCYGKAKGGATGGTVQASAAAEVESNRRLLAMFEGPLGLIRLADDECLCPEGNGQSFVNKLLLLAATEKGTGQDSRDNGGACRGCSRLVYVGDGDEDCRCRGGAVTGGRNSAWPACIDPNKSGNRLANSCFHIKHFGGPVRYTAADLLEKNKGGVGQGLLDLLDDVCTNDLVGKGSRSSRYRDGHRASTVDGAADHRRQNLHQRRLNESVLSQHRRQLTELLREIEDTKVRHIVCIKPNDQLSPNFLDGRNLLRQLSSAGVAAAAERGILSLPSGKRVDKEAFFNDFRVVPGAIQRVLHNEGNCCKLGHGTIFFRKGVWESLERRREAVERRGCEAIQRIWRQHVRRVRVNAEWQAHLAVEAEKRADPDRRQWQLEEERKQAWENQASKKASQTEQQALQEREQLQRWQEHRLQSVIVLQETPCRPAAVFESSHANVVREAKRAQEAAQAATAEQDRAWRLHCEVLEKEARLEAGTAAAERNALDDANRMKCTPPPVVQAWPVDDDISEERLEETTAGETVHHHRGALPMCSPIPDRSEVERAGAGASSGSASAHVAKRIVPRLAGLADYAMRAFLTEPVPKKYGAIRCRVARKEGGGWNPMASSVYGMHHIEGGMVFMMSATRQPLSRTANYYISASPYVETTKDTV 2603
            MF SE+LDPSGFEQLCKNYAVEKIHGKFLQDEV +GKAK G +GGT +A    +VESNRRLLAMFEGPLGLIRLADDECLCPEGNGQSFVNKLLL AATE+GTGQDSR + G CRGCSRLVY+GDGDEDCRCRG AVTGGRNSAWPACIDPNKSGNRL NSCFHIKHFGGPVRYTAADLLEKNKGGVGQ LLDLLDDVCTNDLVGKGSRSSRYRDG RASTVDGAADHRRQNLHQRRLNESVLSQHRRQLTELLREIEDTKVRHIVCIKPNDQLSP+FLDGRNLLRQL SAGVAAAAER ILSLPSG+RVDKEAFFNDFRVVPGAIQR                                                                                    +AWE +ASKKASQ E QALQERE+ Q WQEHRLQSV VLQETPCRPA VF+SSHANVVRE KRAQEAAQAATA  DRAWRLHC+ LEKEARLEAGTAAAERN LDD NRM CTPPPVVQAWP+DDD++EERLEET A ET H HRGALPMCSPIPDRSEVERAGAGASSGSASAHVAKR+VPRLAGLADYAMRAFLTEPVPKKYGAIRCRV RKEGGGWNPMASSVYGMHHIEGGMVFMMSATRQPLSRTANYYISASPY+ETTKDT+
Sbjct:    1 MFRSESLDPSGFEQLCKNYAVEKIHGKFLQDEVYHGKAKAGDSGGTARA----KVESNRRLLAMFEGPLGLIRLADDECLCPEGNGQSFVNKLLL-AATEEGTGQDSRGDRGGCRGCSRLVYLGDGDEDCRCRGSAVTGGRNSAWPACIDPNKSGNRLTNSCFHIKHFGGPVRYTAADLLEKNKGGVGQVLLDLLDDVCTNDLVGKGSRSSRYRDGRRASTVDGAADHRRQNLHQRRLNESVLSQHRRQLTELLREIEDTKVRHIVCIKPNDQLSPSFLDGRNLLRQLCSAGVAAAAERSILSLPSGRRVDKEAFFNDFRVVPGAIQRY-----------------------------------------------------------------------------------RAWEKEASKKASQMELQALQEREKQQHWQEHRLQSVTVLQETPCRPA-VFDSSHANVVRETKRAQEAAQAATAGHDRAWRLHCQALEKEARLEAGTAAAERNMLDDTNRMNCTPPPVVQAWPIDDDVNEERLEETAATETAHRHRGALPMCSPIPDRSEVERAGAGASSGSASAHVAKRVVPRLAGLADYAMRAFLTEPVPKKYGAIRCRVERKEGGGWNPMASSVYGMHHIEGGMVFMMSATRQPLSRTANYYISASPYLETTKDTI 591          
BLAST of mRNA_Ecto-sp13_S_contig6225.16950.1 vs. uniprot
Match: D7FSI8_ECTSI (Myosin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI8_ECTSI)

HSP 1 Score: 889 bits (2297), Expect = 2.480e-311
Identity = 459/513 (89.47%), Postives = 471/513 (91.81%), Query Frame = 3
Query:  396 LEIEFADVEELINRDFGVIEVYLRLFRWLVKQMNACTGLPSDENKTACVSSIGLLDMFGSENLDPSGFEQLCKNYAVEKIHGKFLQDEVCYGKAKGGATGGTVQASAAAEVESNRRLLAMFEGPLGLIRLADDECLCPEGNGQSFVNKLLLLAATEKGTGQDSRDNGGACRGCSRLVYVGDGDEDCRCRGGAVTGGRNSAWPACIDPNKSGNRLANSCFHIKHFGGPVRYTAADLLEKNKGGVGQGLLDLLDDVCTNDLVGKGSRSSRYRDGHRASTVDGAADHRRQNLHQRRLNESVLSQHRRQLTELLREIEDTKVRHIVCIKPNDQLSPNFLDGRNLLRQLSSAGVAAAAERGILSLPSGKRVDKEAFFNDFRVVPGAIQRVLHNEGNCCKLGHGTIFFRKGVWESLERRREAVERRGCEAIQRIWRQHVRRVRVNAEWQAHLAVEAEKRADPDRRQWQLEEERKQAWENQASKKASQTEQQALQEREQLQRWQEHRLQSVIVLQETPCR 1934
            L +     + L  RD  V EVYLRLF+WLVK MNACTGLPSDE K A VSSIGLLDMFG ENLDPSGFEQLCKNYAVEKIHG+FLQDEVCYG AKGGATG T QASA AEVESNRRLLAMFEGPLGLIRLADDECLCPEGNGQSFVNKLLLLAATE+ T QDSR +GGAC GCSRLVYVGDGDEDCRCRGGAVTGGRNSAWPACIDPNKSGNRLANSCFHIKHFGGPVRYTAADLLEKNKGGVGQGLLDLLDDVCTNDLVGKGSRSSRYRDG RASTVDGAADHRRQNLHQRRLNESVLSQHRRQLTELLREIEDTKVRHIVCIKPNDQLSP+FLDGRNLLRQLSSAGVAAAAERGILSLPSG+RVDKEAFFNDFRVVPGAIQRVL+NEGNCCKLGHGTIFFRKGVWESLERRREAVERRGCEAIQRIWRQHVRRVR NAEWQAHLAVEAEKRA  DRRQ QLEEE+KQ WEN+A KKASQ EQQA        +WQEHRLQSV VLQETPCR
Sbjct:  433 LTVPLDKAQALRARDNLVQEVYLRLFKWLVKTMNACTGLPSDE-KQAGVSSIGLLDMFGLENLDPSGFEQLCKNYAVEKIHGRFLQDEVCYGNAKGGATGRTAQASAVAEVESNRRLLAMFEGPLGLIRLADDECLCPEGNGQSFVNKLLLLAATEEETRQDSRGDGGACWGCSRLVYVGDGDEDCRCRGGAVTGGRNSAWPACIDPNKSGNRLANSCFHIKHFGGPVRYTAADLLEKNKGGVGQGLLDLLDDVCTNDLVGKGSRSSRYRDGRRASTVDGAADHRRQNLHQRRLNESVLSQHRRQLTELLREIEDTKVRHIVCIKPNDQLSPSFLDGRNLLRQLSSAGVAAAAERGILSLPSGRRVDKEAFFNDFRVVPGAIQRVLNNEGNCCKLGHGTIFFRKGVWESLERRREAVERRGCEAIQRIWRQHVRRVRANAEWQAHLAVEAEKRAVADRRQQQLEEEKKQVWENEAGKKASQVEQQAXXXXXXXXQWQEHRLQSVTVLQETPCR 944          
BLAST of mRNA_Ecto-sp13_S_contig6225.16950.1 vs. uniprot
Match: D7FSI7_ECTSI (Chain A, Structure Of Human Tulp1 In Complex With Ip3 pdb|3C5N|B Chain B, Structure Of Human Tulp1 In Complex With Ip3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI7_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 1.390e-93
Identity = 153/164 (93.29%), Postives = 156/164 (95.12%), Query Frame = 3
Query: 2109 LDDANRMKCTPPPVVQAWPVDDDISEERLEETTAGETVHHHRGALPMCSPIPDRSEVERAGAGASSGSASAHVAKRIVPRLAGLADYAMRAFLTEPVPKKYGAIRCRVARKEGGGWNPMASSVYGMHHIEGGMVFMMSATRQPLSRTANYYISASPYVETTKDT 2600
            LDDANRM CTPPPVVQAWPVDDDISEERLEETTA  T H HRGA PMCSPIPDRSEVERAGA ASSGSASAH AKR+VPRLAGLADYAMRAFLTEPVPKKYGAIRCRVARKEGGGWNPMASSVYGMHHI+GGMVFMMSATRQPLSRTANYYISASPY+ETTKDT
Sbjct:    2 LDDANRMSCTPPPVVQAWPVDDDISEERLEETTAAGTAHRHRGAFPMCSPIPDRSEVERAGAEASSGSASAHEAKRVVPRLAGLADYAMRAFLTEPVPKKYGAIRCRVARKEGGGWNPMASSVYGMHHIQGGMVFMMSATRQPLSRTANYYISASPYLETTKDT 165          
BLAST of mRNA_Ecto-sp13_S_contig6225.16950.1 vs. uniprot
Match: T0Q527_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q527_SAPDV)

HSP 1 Score: 123 bits (308), Expect = 6.070e-25
Identity = 137/480 (28.54%), Postives = 193/480 (40.21%), Query Frame = 3
Query:  435 RDFGVIEVYLRLFRWLVKQMNACTGLPSDENKTACVSSIGLLDMFGSENLDPSGFEQLCKNYAVEKIHGKFLQDEVCYGKAKGGATGGTVQASAAAE--------VESNRRLLAMFEGPLGLIRLADDECLCPEGNGQSFVNKLLLLAATEKGTGQDSRDNGGACRGCSRLVYVGDGDEDCRCRGGAVTGGRNSAWPACIDPNKSGNRLANSCFHIKHFGGPVRYTAADLLEKNKGGVGQGLLDLLDDVCTNDLVGKGSRSSRYRDGHRASTVDGAADH-------------RRQNLHQRRLNESVLSQHRRQLTELLREIEDTKVRHIVCIKPNDQLSPNFLDGRNLLRQLSSAGVAAAAERGILSLPSGKRVDKEAFFNDFRV--------------VPGAIQRVLHNEGNCCK----LGHGTIFFRKGVWESLERRREAVERRGCEAIQRIWRQHVRRV---RVNAE---WQAHLAV 1739
            RD     +Y RLF WLV ++N    + S +N +   S IGLLD+FG E+ D +GFEQLC NYA EK+  KF  D              TVQA    E         E N+ +L + EG LG++ L ++ CL P+G+   FVNK+    AT K                                         S     +DP +         F I H+ G V Y  +  L+KNK  +   LL+LL            S+SS  RD     +   AA               RRQ      +  ++    R+QL EL+ +I  T  +++ CIKPN   S    D   ++ QL  AGV AA      + P+  R+  + F + F +              V G +QR+L    +       +G   ++F  G+ + LE RR  + R     +QR  R H  R    RV A     QAHL  
Sbjct:  240 RDAFAKGIYSRLFDWLVGRINR--AICSTKNVS---SHIGLLDIFGFESFDHNGFEQLCINYANEKLQQKFNSDIFK-----------TVQAEYVEEGIPLDLVSFEDNQPILDLIEGKLGIVDLLNETCLQPKGSDSMFVNKVHEAFATHK-----------------------------------------SIDRVRMDPMQ---------FKILHYAGDVTYDGSHFLDKNKDTLPSDLLELL----------ASSQSSFIRDVFPELSAKDAASKTTSGGRGPPKSAPRRQGF---LVGNTIAGSFRKQLGELMDQIAKTSTQYVRCIKPNANKSATKFDRHMVVDQLRCAGVIAAIRISRAAFPN--RLSLKEFTSRFAIICPSKLRSAPPEAMVLGLLQRLLPETTSAKNALFAIGRTKVYFSSGLLQQLEDRRNELLRSFALCLQRNLRMHAARAGYRRVRAAVIVLQAHLTA 638          
BLAST of mRNA_Ecto-sp13_S_contig6225.16950.1 vs. uniprot
Match: A0A8K1CHC6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHC6_PYTOL)

HSP 1 Score: 123 bits (309), Expect = 6.110e-25
Identity = 125/451 (27.72%), Postives = 185/451 (41.02%), Query Frame = 3
Query:  450 IEVYLRLFRWLVKQMNACTGLPSDENKTACVSSIGLLDMFGSENLDPSGFEQLCKNYAVEKIHGKFLQDEVCYGKAKGGATGGTVQAS--------AAAEVESNRRLLAMFEGPLGLIRLADDECLCPEGNGQSFVNKLLLLAATEKGTGQDSRDNGGACRGCSRLVYVGDGDE-DCRCRGGAVTGGRNSAWPACIDPNKSGNRLANSCFHIKHFGGPVRYTAADLLEKNKGGVGQGLLDLLDDVCTNDLVGKGSRS---SRYRDGHRASTVDGAADHRRQNLHQRR--LNESVLSQHRRQLTELLREIEDTKVRHIVCIKPNDQLSPNFLDGRNLLRQLSSAGVAAAAERGILSLPSGKRVDKEAFFNDFR------VVP-----------GAIQRVLHN-----EGNCCKLGHGTIFFRKGVWESLERRREAVERRGCEAIQRI---WR 1685
            + +Y  LF+WL+ ++NA T  P     T  V+ I +LD+FG E  + + FEQLC NYA EK+  KF QD              T+Q             E   N  +L++ EG  G++ L ++EC+ P+G+  +F NKL                            + GD D  +C                          R A   F IKH+ GPV+Y     L KN   +   LL          L+GK + S     + D   A+    AA   R  L +R   + ++V +Q + QL  L+ +I  T V +I CIKPN++ SP+  + + +  QL  AGV  A     ++ P+  R+ +  F   FR      + P            A + +L N     +    ++G   IFFRKG  ESLE  R          +QR    WR
Sbjct:  421 VALYSHLFQWLITRVNASTSAPH----TDVVNKICILDIFGFEIFEKNSFEQLCINYANEKLQQKFTQDVFK-----------TIQTEYEEEGIPWTKIEFADNANVLSLIEGRFGVLSLLNEECMRPKGSDAAFANKLK--------------------------AHYGDNDRFECP-------------------------RFARDSFIIKHYAGPVQYDTNGFLIKNTDALQNDLLV---------LIGKSNSSFVKQLFPDEKDAAV---AASSVRSTLKRRTSIIADTVGTQFKSQLNGLMEDIRRTNVHYIRCIKPNNRKSPHVFNKQRVTEQLQCAGVVEAVRISRMAFPN--RLLQTIFLERFRGLASGRIAPITSSDPEEKIVSAARDLLENYLMKDKPKEYQIGKTRIFFRKGALESLEEMRSRKLNEAAVVLQRYTKKWR 791          
BLAST of mRNA_Ecto-sp13_S_contig6225.16950.1 vs. uniprot
Match: A0A2D4CFA7_PYTIN (Myosin-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFA7_PYTIN)

HSP 1 Score: 123 bits (308), Expect = 8.430e-25
Identity = 126/474 (26.58%), Postives = 187/474 (39.45%), Query Frame = 3
Query:  450 IEVYLRLFRWLVKQMNACTGLPSDENKTACVSSIGLLDMFGSENLDPSGFEQLCKNYAVEKIHGKFLQDEVCYGKAKGGATGGTVQAS--------AAAEVESNRRLLAMFEGPLGLIRLADDECLCPEGNGQSFVNKLLLLAATEKGTGQDSRDNGGACRGCSRLVYVGDGDEDCRCRGGAVTGGRNSAWPACIDPNKSGNRLANSCFHIKHFGGPVRYTAADLLEKNKGGVGQGLLDLLDDVCTNDLVGKGSRSSRYRDGHRASTVDG-----AADHRRQNLHQRRLNESVLSQHRRQLTELLREIEDTKVRHIVCIKPNDQLSPNFLDGRNLLRQLSSAGVAAAAERGILSLPSGKRVDKEAFFNDFRVVPGAIQRVLHNEGNCC--------------------KLGHGTIFFRKGVWESLERRREAVERRGCEAIQRIWRQHVRRVRVNAEWQAHLAVEAEKRADPDRR 1772
            + +Y  LF+WL+ ++NA T  P  +      + I +LD+FG E  + + FEQLC NYA EK+  KF QD              T+Q+            E   N  +L + EG  G++ L ++EC+ P+G+  +FVNKL                            +  D D                  P          R A   F IKH+ GPV Y A   L KN   +   LL L+    ++    K       +D   A+   G     AA  RR ++    + ++V +Q + QL  L+ +I  T V +I CIKPN + SP     + +  QL  AGV  A     ++ P+  RV +  F   FR +  A   V  +  +                      +LG   IFFRKG  E+LE +R          +QR  ++          W+A  A  A + A   RR
Sbjct:  391 VALYSHLFQWLINRVNASTSAPHAD----VANKICILDIFGFEIFEKNSFEQLCINYANEKLQQKFTQDVFK-----------TIQSEYEEEGIPWTKIEFADNANVLGLIEGRFGVLSLLNEECMRPKGSDAAFVNKLK--------------------------AHYTDNDR--------------FEMP----------RFARESFIIKHYAGPVEYDANGFLIKNTDALQNDLLVLV--RHSHSAFVKALFPEEKKDDGSAAPAGGVGGRPAALKRRTSI----IADTVGTQFKSQLNGLMEDIRRTNVHYIRCIKPNSRKSPMVFCKKRVTEQLQCAGVVEAVRISRMAFPN--RVLQTVFLERFRALAKAPLAVAESSDDAVCTAVRDLLENHLMKDKMTEFQLGKTRIFFRKGALEALEEQRSRKLNEAAVVLQRYAKK----------WRAQAAFRAIRNASRSRR 781          
BLAST of mRNA_Ecto-sp13_S_contig6225.16950.1 vs. uniprot
Match: A0A7S2I7P4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I7P4_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.990e-24
Identity = 111/383 (28.98%), Postives = 164/383 (42.82%), Query Frame = 3
Query:  453 EVYLRLFRWLVKQMNACTGLPSDENKTACVSS---IGLLDMFGSENLDPSGFEQLCKNYAVEKIHGKFL-------QDEVCYGKAKGGATGGTVQASAAAEVESNRRLLAMFEGPLGLIRLADDECLCPEGNGQSFVNKLLLLAATEKGTGQDSRDNGGACRGCSRLVYVGDGDEDCRCRGGAVTGGRNSAWPACIDPNKSGNRLANSCFH------IKHFGGPVRYTAADLLEKNKGGVGQGLLDLLDDVC--TNDLVGKGSRSSRYRDGHRASTVDGAADHRRQNLHQRRLNESVLSQHRRQLTELLREIEDTKVRHIVCIKPNDQLSPNFLDGRNLLRQLSSAGVAAAAERGILSLPSGKRVDKEAFFNDFRVVPGAIQR 1547
            E+Y R+F WLV+ +NA T    +    A V+    +GLLD+FG E+   + FEQLC NYA EK+ GK+L       QDE  Y   +G A G             N  +L + EG +GL+ + ++EC+ P GN  SFV+KL  +                                                       NK  + L N   H      I+H+ GPV+Y A   ++KN   + +   DLLD  C  +NDL+    ++        A+   G    ++  L       +V ++ R QLT L+  I  T+ R+I CIKPN +  P  LD  +  +QL  AGV +A     ++ P+  R+  E     FR +  A  R
Sbjct:  447 EIYERVFDWLVRNINAATTAEHNYEDAADVAEFGLVGLLDIFGFESFKINRFEQLCINYANEKLQGKYLLDIFRSVQDEYEY---EGIALGDV-------PFTDNSEVLKLIEGRMGLVAILNEECVRPSGNDTSFVSKLKTV-------------------------------------------------------NKDISVLVNERLHRPTEFGIEHYAGPVKYNAEMFVQKNTDVLPK---DLLDCACKSSNDLISTELKAKAEASA--AAPTTGRGRSKKSAL-------TVGTKFRTQLTSLMANISKTRTRYIRCIKPNPEKEPVKLDLLSSAQQLRCAGVVSAVTISRVAFPN--RLTHETAVQRFRCLGSAETR 750          
BLAST of mRNA_Ecto-sp13_S_contig6225.16950.1 vs. uniprot
Match: A0A7S4MQN2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MQN2_9STRA)

HSP 1 Score: 120 bits (300), Expect = 5.320e-24
Identity = 144/563 (25.58%), Postives = 221/563 (39.25%), Query Frame = 3
Query:  189 GSALVNTQHFESLVNLFGAAGLSVALVFVPRVFRTGQLLMPRHLTPKLYPVPARTLLFIIAPLQYTACILEIEFADVEELINRDFGVIEVYLRLFRWLVKQMNACTGLPSDENKTACVSSIGLLDMFGSENLDPSGFEQLCKNYAVEKIHGKFLQDEVCYGKAKGGATGGTVQASAAAEVESNRRLLAMFEGPLGLIRLADDECLCPEGNGQSFVNKLLLLAATEKGTGQDSRDNGGACRGCSRLVYVGDGDEDCRCRGGAVTGGRNSAWPACIDPNKSGNRLANSCFH------IKHFGGPVRYTAADLLEKNKGGVGQGLLDLLDDVCTNDLVGKGSRSSRYRDGHRASTVDGAADHRRQNLHQRRLNESVLSQHRRQLTELLREIEDTKVRHIVCIKPNDQLSPNFLDGRNLLRQLSSAGVAAAA-----------------ERGILSLPSGKRVDK---------EAFFNDF-----RVVPGAIQRVLHNEGNCCKLGHGTIFFRKGVWESLERRREAVERRGCEAIQR-----IWRQHVRR-----VRVNAEWQAHLA 1736
            GS + N    + L +L G     +      RV +T    M   +T +L PV A+             C               D    E+Y  +F+ LV  +N  T  P     ++ V SI +LDMFG E+   + FEQLC NYA E+I  K+  D     K +  A G  +Q    + V+ N  +L++ EG  G+I + ++ECL P+GN +SFV K+ ++                                                       +K  NRL +   H      I+HF G V+Y A+  +E+N   + + LLD     C       GS +   R+G      D   + +  N  ++R   ++ ++ + QL  L+ +I+D++ R+I CIKPN +  P  LD    + QL+SAG+  A                  +R    LP   +  K         E   ND      +VV G +          C  G   +FFR G  E LE  R  +       +QR     I RQ +RR     V++ A+W+   A
Sbjct:  135 GSVIANPDELDKLSSLVGITSEKLTEALTTRVVKT----MGEEITVRLTPVAAKD-----------GC---------------DALAKEIYAHVFQSLVDTINKSTSPPVGIAGSSGVRSISILDMFGFESFAVNRFEQLCINYANERIQHKYAMDTFLLIKEEYEAEG--IQIYDFSRVD-NSDVLSLVEGRTGVIMMLNEECLRPKGNDESFVYKIKVV-------------------------------------------------------HKESNRLVSDLLHRPTEFEIRHFAGKVKYDASGFVERNTDQLPKILLD-----CA-----MGSSNDIIREGFERVVSD--LEKKASNYRRKRSANTICTKFKSQLMALMEDIKDSRTRYIRCIKPNRKKLPVVLDHSITMIQLASAGLVTAISVSRETFPNRLLYEVVWDRFRCLLPEDHKARKSDGTTREKAELLLNDLLNNKEKVVGGEVIAPF-----AC--GTSKVFFRSGSLELLESDRHKLYSAKAAILQRHARGVITRQKLRRMTAAAVKLQAQWRCKAA 590          
BLAST of mRNA_Ecto-sp13_S_contig6225.16950.1 vs. uniprot
Match: A0A1V9YV40_9STRA (Myosin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YV40_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.150e-23
Identity = 131/472 (27.75%), Postives = 190/472 (40.25%), Query Frame = 3
Query:  435 RDFGVIEVYLRLFRWLVKQMNACTGLPSDENKTACVSSIGLLDMFGSENLDPSGFEQLCKNYAVEKIHGKFLQDEVCYGKAKGGATGGTVQASAAAE--------VESNRRLLAMFEGPLGLIRLADDECLCPEGNGQSFVNKLLLLAATEKGTGQDSRDNGGACRGCSRLVYVGDGDEDCRCRGGAVTGGRNSAWPACIDPNKSGNRLANSCFHIKHFGGPVRYTAADLLEKNKGGVGQGLLDLLDDVCTNDLVGKGSRSSRYRD-----GHRASTVDGAADHRRQNLHQRRLNESVLSQHRRQLTELLREIEDTKVRHIVCIKPNDQLSPNFLDGRNLLRQLSSAGVAAAAERGILSLPSGKRVDKEAFFNDFRV--------------VPGAIQRVLHNEGNCCK----LGHGTIFFRKGVWESLERRREAVERRGCEAIQRIWRQHVRRVRVNAEWQAHLAVEAEKRA 1757
            RD     +Y  LF WLV ++N    + S +N     + IGLLD+FG E+ D +GFEQLC NYA EK+  KF  D              TVQ     E         E N+ +L + EG LG++ L ++ CL P+G    FVNK+    A+ K                                         S     +DP +         F I H+ G V Y     L+KNK  +   LL+LL            S+SS  RD       +A++    +  RRQ      +  ++    R+QL EL+ +I  T  +++ CIKPN   S    D R ++ QL  AGV AA      + P+  R+  + F   F +              V G +Q +L    +       +G   ++F  G+ + LE RR  + R     IQR  R    R R     +A + V+A  RA
Sbjct:   47 RDAFAKGMYSHLFDWLVGRINR--AICSTKN---VATHIGLLDIFGFESFDHNGFEQLCINYANEKLQQKFNSDIFK-----------TVQKEYVEEGIPLDLVTFEDNQPILDLIEGKLGIVDLLNETCLQPKGTDSMFVNKVHEAFASHK-----------------------------------------SIDRVRMDPMQ---------FKIIHYAGDVTYDGTGFLDKNKDTLPSDLLELL----------ASSQSSFIRDVFPELAPKATSTKPKSAPRRQGF---LVGNTIAGSFRKQLGELMEQIAKTATQYVRCIKPNANKSATEFDRRMVVDQLRCAGVIAAIRISRAAFPN--RLTLKEFATRFAIICPSKLRTASPEAMVLGLLQLLLPETTSAKNALFAIGRTKVYFSSGLLQRLEDRRNELLREFAALIQRNVRMFACRQRYQRLRRAAVLVQAHSRA 437          
BLAST of mRNA_Ecto-sp13_S_contig6225.16950.1 vs. uniprot
Match: A0A7S1VYN9_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1VYN9_ALECA)

HSP 1 Score: 109 bits (272), Expect = 3.100e-22
Identity = 94/340 (27.65%), Postives = 148/340 (43.53%), Query Frame = 3
Query:  432 NRDFGVIEVYLRLFRWLVKQMNACTGLPSDENKTACVSSIGLLDMFGSENLDPSGFEQLCKNYAVEKIHGKFLQDEVCYGKAKGGATGGTVQASAAAEVESNRRLLAMFEGPLGLIRLADDECLCPEGNGQSFVNKLLLLAATEKGTGQDSRDNGGACRGCSRLVYVGDGDEDCRCRGGAVTGGRNSAWPACIDPNKSGNRLANSCFHIKHFGGPVRYTAADLLEKNKGGVGQGLLDLLDDVCTNDLVGKGSRSSRYRDGHRASTVDGAADHRRQNLHQRRLNESVLSQHRRQLTELLREIEDTKVRHIVCIKPNDQLSPNFLDGRNLLRQLSSAGVAAA 1451
             RD    E+Y R+F WLV ++ A T  PS ++       +GLLD+FG E+   + F Q C NYA EK+  KF  D     + +    G   +     E + N  LLA+ E  LG+I + ++EC+ P+GN ++FV+KL  +                                             + A PA   P    +R     F IKH+ GPV YTA+  LE+NK  +   ++ L+     N L+ +   +   RD   A    G           +  +++V ++ +  L +L+  +  T  +++ CIKPN   SP  +D   ++ QL  AGV  A
Sbjct:   31 TRDATAKELYARVFDWLVGRICAATSAPSAQSN----HFVGLLDIFGFESFAINRFAQFCINYANEKLQQKFTLDVFKAVQQEYSDEGIPWERI---EFKDNAPLLALVESKLGIIAMLNEECVRPKGNDENFVSKLSTV---------------------------------------------HKADPAFSTPKLGAHREVQ--FTIKHYAGPVLYTASGWLERNKDTISDDVVALMQS-SKNPLI-RDLFADPLRDDAGAGDAPGKG---------KLGSDTVSTKFKASLAQLMETVGRTTTQYVRCIKPNKNKSPGEVDNPMVVEQLRCAGVIEA 305          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6225.16950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JY03_9PHAE0.000e+078.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSI8_ECTSI2.480e-31189.47Myosin motor domain-containing protein n=1 Tax=Ect... [more]
D7FSI7_ECTSI1.390e-9393.29Chain A, Structure Of Human Tulp1 In Complex With ... [more]
T0Q527_SAPDV6.070e-2528.54Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A8K1CHC6_PYTOL6.110e-2527.72Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CFA7_PYTIN8.430e-2526.58Myosin-like protein n=1 Tax=Pythium insidiosum Tax... [more]
A0A7S2I7P4_9STRA4.990e-2428.98Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S4MQN2_9STRA5.320e-2425.58Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1V9YV40_9STRA2.150e-2327.75Myosin-like protein n=1 Tax=Achlya hypogyna TaxID=... [more]
A0A7S1VYN9_ALECA3.100e-2227.65Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6225contigEcto-sp13_S_contig6225:347..8438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score892.9
Seed ortholog evalue1.1e-256
Seed eggNOG ortholog2880.D7FSI8
Model size2612
Hectar predicted targeting categoryother localisation
Exons14
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
Cds size2472
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463866.4951994-CDS-Ecto-sp13_S_contig6225:346..4601681463866.4951994-CDS-Ecto-sp13_S_contig6225:346..460Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6225 347..460 -
1681463866.5106807-CDS-Ecto-sp13_S_contig6225:685..7911681463866.5106807-CDS-Ecto-sp13_S_contig6225:685..791Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6225 686..791 -
1681463866.5194416-CDS-Ecto-sp13_S_contig6225:1082..13491681463866.5194416-CDS-Ecto-sp13_S_contig6225:1082..1349Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6225 1083..1349 -
1681463866.5282176-CDS-Ecto-sp13_S_contig6225:1770..19621681463866.5282176-CDS-Ecto-sp13_S_contig6225:1770..1962Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6225 1771..1962 -
1681463866.538038-CDS-Ecto-sp13_S_contig6225:2316..25341681463866.538038-CDS-Ecto-sp13_S_contig6225:2316..2534Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6225 2317..2534 -
1681463866.5509725-CDS-Ecto-sp13_S_contig6225:2922..30341681463866.5509725-CDS-Ecto-sp13_S_contig6225:2922..3034Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6225 2923..3034 -
1681463866.5689414-CDS-Ecto-sp13_S_contig6225:3179..32361681463866.5689414-CDS-Ecto-sp13_S_contig6225:3179..3236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6225 3180..3236 -
1681463866.5846658-CDS-Ecto-sp13_S_contig6225:3452..36521681463866.5846658-CDS-Ecto-sp13_S_contig6225:3452..3652Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6225 3453..3652 -
1681463866.5945253-CDS-Ecto-sp13_S_contig6225:4028..41701681463866.5945253-CDS-Ecto-sp13_S_contig6225:4028..4170Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6225 4029..4170 -
1681463866.6031306-CDS-Ecto-sp13_S_contig6225:4510..46431681463866.6031306-CDS-Ecto-sp13_S_contig6225:4510..4643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6225 4511..4643 -
1681463866.6114647-CDS-Ecto-sp13_S_contig6225:5455..57641681463866.6114647-CDS-Ecto-sp13_S_contig6225:5455..5764Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6225 5456..5764 -
1681463866.6203341-CDS-Ecto-sp13_S_contig6225:6276..64671681463866.6203341-CDS-Ecto-sp13_S_contig6225:6276..6467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6225 6277..6467 -
1681463866.6311698-CDS-Ecto-sp13_S_contig6225:6848..69641681463866.6311698-CDS-Ecto-sp13_S_contig6225:6848..6964Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6225 6849..6964 -
1681463866.6456537-CDS-Ecto-sp13_S_contig6225:7983..82981681463866.6456537-CDS-Ecto-sp13_S_contig6225:7983..8298Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6225 7984..8298 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463866.661469-UTR-Ecto-sp13_S_contig6225:8298..84381681463866.661469-UTR-Ecto-sp13_S_contig6225:8298..8438Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6225 8299..8438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6225.16950.1prot_Ecto-sp13_S_contig6225.16950.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6225 347..8298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6225.16950.1

>prot_Ecto-sp13_S_contig6225.16950.1 ID=prot_Ecto-sp13_S_contig6225.16950.1|Name=mRNA_Ecto-sp13_S_contig6225.16950.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=824bp
MQFVVSSSACAHPQKHGSALVNTQHFESLVNLFGAAGLSVALVFVPRVFR
TGQLLMPRHLTPKLYPVPARTLLFIIAPLQYTACILEIEFADVEELINRD
FGVIEVYLRLFRWLVKQMNACTGLPSDENKTACVSSIGLLDMFGSENLDP
SGFEQLCKNYAVEKIHGKFLQDEVCYGKAKGGATGGTVQASAAAEVESNR
RLLAMFEGPLGLIRLADDECLCPEGNGQSFVNKLLLLAATEKGTGQDSRD
NGGACRGCSRLVYVGDGDEDCRCRGGAVTGGRNSAWPACIDPNKSGNRLA
NSCFHIKHFGGPVRYTAADLLEKNKGGVGQGLLDLLDDVCTNDLVGKGSR
SSRYRDGHRASTVDGAADHRRQNLHQRRLNESVLSQHRRQLTELLREIED
TKVRHIVCIKPNDQLSPNFLDGRNLLRQLSSAGVAAAAERGILSLPSGKR
VDKEAFFNDFRVVPGAIQRVLHNEGNCCKLGHGTIFFRKGVWESLERRRE
AVERRGCEAIQRIWRQHVRRVRVNAEWQAHLAVEAEKRADPDRRQWQLEE
ERKQAWENQASKKASQTEQQALQEREQLQRWQEHRLQSVIVLQETPCRPA
AVFESSHANVVREAKRAQEAAQAATAEQDRAWRLHCEVLEKEARLEAGTA
AAERNALDDANRMKCTPPPVVQAWPVDDDISEERLEETTAGETVHHHRGA
LPMCSPIPDRSEVERAGAGASSGSASAHVAKRIVPRLAGLADYAMRAFLT
EPVPKKYGAIRCRVARKEGGGWNPMASSVYGMHHIEGGMVFMMSATRQPL
SRTANYYISASPYVETTKDTVRQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig6225:347..8438-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6225.16950.1 ID=mRNA_Ecto-sp13_S_contig6225.16950.1|Name=mRNA_Ecto-sp13_S_contig6225.16950.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8092bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6225:347..8438- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTAAAGGTAGACTTGAAGACGGGCGGTGTTTTAAAAGGGTACTTGTACG CGTTGTGGAATGGTATGTTTTTGGCAGGACAGATCAACTACGTTCAGTCC AAGGGTGTAGTGACACCACGCGGCAAACACTCCAGTTCGCATGCAATTTG TCGTGTCTTCCAGTGCTTGTGCGCACCCTCAGAAACACGGCAGTGCTCTT GTGAATACACAGCACTTCGAGAGTCTCGTCAACCTTTTTGGGGCCGCAGG TCTCTCCGTTGCCCTTGTCTTTGTGCCAAGAGTATTCCGCACCGGGCAGC TTCTCATGCCCCGGCATCTGACGCCAAAGCTCTATCCCGTTCCTGCTCGT ACGTTACTGTTCATTATTGCTCCTCTACAATACACCGCGTGCATCTTGGA GATCGAGTTTGCAGACGTCGAAGAATTAATCAATCGCGACTTCGGGGTGA TAGAGGTGAACCGATAAGGGGAAAAATAGAGAGCCGTTTTGTCTTACACT TACTTTCAGCAGCCCCCGGTCTGCTGGAACTTGCGGCTTCCCTACACTTT TCTTTTGTAGGTTGATGACTACTCCCCATTTTAGTTGCTGCTGTCGAAGC GCGCCTTCTTGACCAGACGGTTTATAGCGACCGAGGTGGGCCAAAAATGA AGAGGGTGGCGGGCTCATCGACACCAAAGGTCTTCCGGTTGACAAATCAG GTTCCGCGACAAAGATTGGCAATGATCACGGTCCTTTTAGGGCCTTCCCC ACTATACTCGGGCGCACAAAGCATAAAAGTACTAAAACCTAAGGAATGCT TCGAGCATGCTTGAACCGAATTGAGCATTTTTGTCGAAAATTGAGCACAA ATGACAGTTTTGGGCACATTTTCCAGCGTAATTGGCCAACAACAATAGAG CACATACTTCTGTGATGGGGAAGGCCATATACTATCTTCCCACGTGTTGT TGTCGTGGGTCTTCGTACGACATGTCTAGATACGTGATGAGGCGCCTCTG GAGGCAGCGAGCGCCATGCTTGGCTGCAACAAGCACCATCTGCGCAATGC GCTGCTCACGCGGAGTCTCGCCGCCGGGGGGGAGGGAGGCACAGCATTCA TGTCGAGGGGGGGGTCGAGGAGGACGCGGGGGGTCGTGGAAACGCTGACC ATGCCATTGGACAAAGCCCAGGCCTTGAGGGCGAGGGACAACCTTGTCCA AGAGGTTTGTCCACGTGCGCAGTCAGATAGAAAAACCAGGCGCCGTTTAG ATATTTAGAGCAGAGATAAAACCTTCGCCCAGAAGAGGCACTGAGGTCTT GCGACGAGGTCGTAACACACGGCGGCGAGGGGCAGTGTCAAATTGACATG TTCATGGGATGCATTTTTCCCGCTTGGTGTGGTGGCGCTGACGCCGACAT CGTCACTATTGCTCGGCAAGCGCGTTTCAAACTGCTCGGCTTTGCTGCCG CCTGCTCTCGCGTTCGATGCCCAGGTATACTTGAGGCTGTTCAGATGGCT AGTAAAACAAATGAACGCTTGCACGGGCCTCCCATCCGATGAAAACAAAA CGGCATGCGTCAGCTCCATAGGGCTCTTGGACATGTTTGGGTAAGTTCGT GAGAGAGAGGGAGGGTGGGGGTGGGCGGGGATGCCAGGATTGCGAGGCTC ACTTTCGCTTCGTGCTGCGTGACTGCATAATCGATTCTCACGGCACAGGA ACACGTCTACTCATTCCAAATCGCATGGAACGGTAAAAAGGCAGCAAGAT GCTGCTGTTGTTTCCCTCCACCCCTGGGTCGGTGAAACAGAGTGCGGTGG TGTGGGACGGGGGCGTCTACAACTCTCATAGCTGCGCTGCCGCATGGTAC ATAAGAGATGGACCAGACCATACTCCAGCCGCTCCCATTTCGGTGGGTCG AAGACGTCATTGGCAAACTCTGATCCCCCTTCGGTGCGTCCGCCCGCTTC ACTTGACGTGCACATGTTCAGGTCGGAAAACCTCGACCCCAGCGGATTCG AGCAACTCTGCAAGAACTATGCTGTCGAGAAAATTCACGGAAAGTTCCTT CAGGACGAGGTATGCTACGGGAAAGCCAAGGGCGGTGCCACCGGGGGAAC GGTCCAAGCGTCGGCGGCAGCTGAGGTGGAGAGCAATCGACGGCTGTTGG CTATGTTTGAGGGTGAGCGAGAGAGGGAGGGGTGAAGCATGGACTGTGAT GAGAAACATTGAACTTCTTTTATTGCACACAAAAAGCAATGCTCACTGAC CAATTGTGCAGATTTTATGGCAGGGTTTTACTATATATAGGGCTTCCAGG TAAGGTGAAGTCTCGGCGAGAACGGACAGAGAAGGCAGCCTTAGTTTCAA CAGCCACAGGCGACAACTTTCGGACGAATCCCGTAACGTTAAAGCTACGG AATCAAAGAAAATCCTCGGAAACTGCACCTATTAAGACCAACCGGACAGG ATTGCCCTCACCCCTTCCCGGCCGTGCTGTTTGATTTTGCACTGAAACTG ACGATGCAGTCCGGCATGTGCTTGCGTGGTGGAACGCTCTTGTGCGCAAC ACACATCACATACTTTCGTTTTTTCTACTGATTGTTTCAGCCCATCCCGA GTGATATTGCGTAGCCTCACGCCTGCCTATGCTACTGACCTCAACTCAGT TTCCCTGGGCACTCCTTTGGACAGGTCCACTGGGCTTGATTCGTCTCGCC GACGACGAGTGCCTCTGCCCAGAAGGAAACGGCCAGTCTTTCGTGAACAA GCTCCTTCTTCTCGCAGCTACGGAGAAAGGGACAGGGCAAGACTCACGGG ACAATGGTGGCGCCTGTAGGGGTTGCTCTCGCTTGGTCTACGTTGGAGAC GGAGACGAAGACTGCCGCTGTCGCGGTGGTGCGGTCACCGGGGGCAGAAA CAGCGCGTGGCCGGCGTGCATTGACCCAAACAAGTCTGGGAACAGGCTAG CAAACTCCTGTTTTCACATCAAGCACTTTGGAGGTAAAGAAAACAAGAGG CTGGAATGCGGCTTCTCTTTTTCAAGTCCTCGTTCGTGTATGGTACGTGG GACTTCTTGTTTATTGTTCGTCCACAGTCGTTTCACAGCTGAGTATTTTC GTAAAAGGCCGAGGAAGACTACTAACTGGGGTGTGTACTAGTGTGTACAC ATCGAGCTCCCGTAAGTGACTAGGTCAGGTTGCCTTCGGTGCGGTCTGTT TATTACCGCGTAGGGGAGTAAGTGAAAAAGTCGGTGTCTCACTTTGACCG CCATTGGTGTATGACAGATGTTCATGTGACTGTAGCAAATGCTATCCCAT TCACGTTCAGATATTTCGCGGTTGGGCTAAGTGGATGTTCGCGACGTGCT GTCACATCGAAAATTCTGTGGGTAATTGCATCAAACCCCCTTGAGAGCGG CGCCAGGTGTTCTTATACTCCGCAACAAAGAACAAAACAAGCTGGTGTCT GTGATGCTTCCAAAGAAAAGCCATTGATGGCCATAGCTTTCAGACCATTG ACGAAATGACGCGGCCTGACCTCTTCAAGATATTGGTGAATCGAAGTGGC CCCTCGTTCTCCCAGCTCTGTTCTCGGAACAAAAACACTTTCAGTTTCCC CAACGTCAACAACCAGTATAGCTCTCTACTCCAGCCCACCAGCGTCCCAA GACGCTCCTGGTGTTGACGCAATGCAAATTACAAACGTTCCCAACTCATC CGCCTGTTTCTGCTGCGAGAGTTTCTGCTCCATCCCTAACGTTCCTCAGC AAACGATTACGTCATGGTGTCGCTTTTGTCCGCACGTGATTGCAGGACCG GTGCGATACACCGCGGCCGACCTGTTGGAGAAGAACAAGGGCGGGGTCGG GCAGGGTTTGCTTGATCTTCTTGACGATGTGTGCACCAACGACTTGGTTG GCAAGGGGTCGAGGAGTAGCCGCTACAGGTCGGTAGAGATAGGGAAGGTT TATTGCTTCAATACTGCTGTGAATTGTTAGACGTCATCCCACCTTTTGAG TGCAAGAAGATGTAACGTATGGCATGTTCCGGGCAACCGTGTCTCGTTGA ATTTCTGCGGTATAGAGCAATGGGCTGTGCGCCGATACCACTGGGCCAGT GTGGAAGAATCAGTTACTTTGAATACCTTGACTGGCTTCCCCGTCCCATG GGGAAGCCAACTCTGAACACAACGCGGGAGAGAGAAAATAAAACACACGA ACAAGAGACATAGCACATGTTACGTCCCCTACCCCCACCGCCACGTATGG TACACACCTCATGTACAGGGATGGGCACCGGGCCAGCACAGTGGACGGCG CCGCCGACCACCGGAGGCAAAACTTGCACCAGCGTAGGCTCAACGAGTCC GTCCTGTCGCAGCACCGACGCCAGCTCACGGAATTATTGCGCGAAATCGA GGACACCAAGGTATGCTCCGGTCCCCACCGTGATCCGTGCAGGAGTTGGG GGTAGGTTTTCATCGACGAGTTATTAGACGGTTGTTTCAGCCTTGCAGCG CGTCTCATCGACTGCCCTTGGAGTGAGGCGAGGGGCAGACGCAATCCCCG CCGTGCTGCTTGTGTTAAAGTGGTACCGCTTACTTTCTCAAGGCCGTGAG TTCTTCAGCATCAACTCAACGGCAAACGTCAAACGAGAACGAACCAGCTG TCTACAGTGGTTTCCTTGAGATAGACAATGATTTCGTGTGAGTTTTCTAT ATCTCTGCGCTCTGCACCGTGTTTCTTTCTTTTTTCGGTAGGAAACATGC GTAGAGGAATCACTTCTTTCCCCGGTGCTTCAACAGGTTCGTCATATTGT CTGCATCAAGCCAAACGATCAGCTTTCTCCCAACTTCCTCGACGGCCGAA ACCTCCTTCGACAACTGTCCTCGGCGGGAGTAGCGGCAGCAGCAGAAAGA GGTATCCTCTCGTTGCCATCCGGCAAGAGGGTGGACAAAGAAGCGTTCTT CAACGACTTCAGGGTCGTCCCGGGGGCGATACAGAGGTACCGTGCACGCC CCTCATAACCGCAACAAACCTATTCTTCATCTCTGAGAGCAAGGCCTCGT TGGTTGACATTTGTAGTTATGTTATTCCTTACTAGTTTCAGCTTTCTTGA ACGCGAAGCACTTATATGCACCTGCTTCGAGTTATGTGCCCCTTTAGGTA TGCTTTCTTGCTTCGCCCCGTGTTCTTGCCACGCCCTCAACGCTCAACGC AGGGTCTTACACAACGAGGGAAATTGCTGCAAGCTGGGTCACGGCACCAT ATTCTTCAGGTGTGCTTGCGCGCGCTCCCAAACTGCAAAGTGCGGTGTTG GCGTGCGGTGTTTTTTTCCAACTATTTACGACGAGAGCTTTATCTTATCC TGACATGCGTGTGATGGAATGTGAACAGCAGTGCCTGTGGATTGCCTCCA ACAGGAAAGGTGTCTGGGAATCCCTTGAGCGACGAAGGGAAGCGGTCGAA CGGCGGGGGTGCGAGGCGATACAACGGATATGGCGACAACACGTCCGTCG TGTCAGAGTCAATGCCGTAAGTGGTACCCAATCCTCCGACGTTCCCACAT CGTTCCCACCGGTTGGCGTCAAATGTGATTGGAGGAGAAACAAGCGCACT AGAAATTTTCACGTCGGGTTTCAGTCGGGCTGGGGCGTCAAGATGGATAG AGACCAACGTCGTTGTGTACAACAAACCGCCAAGTGACAAGCAGAAGGGT TGCGAACGGGGCTGTGCTGTGAAGCTGTGCACGATGCGAGACATCCCCGG AAAACGCGCGAGGTTACCGATGCTCCACACATCATAGGAGAGGGGTTACA ATGACACGAGGCGCGATCCTGCGGTCTCACTCGGTGATTAGAGCGGGAGA AATCGTTTCTCAGTGTTTTACGGCCTGTTGTCACTTTTGCTATTAATGAC AAAGGAATGGCAAGCGCACCTTGCGGTCGAAGCGGAGAAGAGGGCTGATC CTGACCGGCGACAATGGCAACTCGAGGAGGAGAGGAAGCAGGCGTGGGAG AACCAAGCGAGCAAGAAAGCGAGCCAGACGGAACAGCAGGCACTCCAGGA GAGGGAACAGCTACAACGGTGGCAGGAACACCGCTTGCAATCCGTCATCG TGTTGCAAGAGACCCCGTGCAGGTACTGATCACAGACTCAACGTGAGCTT TTGCACCGTAGCAGCAGTTGGTGTCAATCCCAGACAACACGAATGCAGCA GAAGCCTACCAAGTCTGGCAATGTGGTTTGCCTTCTGGCACATTTTAAAC CGTGATGATGCGATGAATTACACGAGTGCACCTTGGTATCAGCGCGGCCT TGCATATCTTCTTCGATAAATGGAAAAAATGTAATGTCACACCTACAAAC ACGTCCCGAACGGACGTAGGCGCGCCTATGGCCTCAAGCTCGTATCGGTA TCATCTAAGTGTCGTTTGAGCATACATGCACCCAACAATGGAGACATTTT GCCACATACGTGGTTCCGTCTGGCAGGCCAGCAGCGGTCTTCGAGTCCTC ACATGCGAACGTCGTTCGAGAGGCAAAGAGGGCGCAAGAGGCAGCACAGG CCGCCACCGCTGAACAAGATAGAGCGTGGCGATTGCATTGCGAAGTGCTG GAGAAGGAAGCCAGGCTAGAGGCAGGGACAGCTGCGGCGGAGAGAAATGC GCTGGATGATGCCAACAGGTACGGGGAGCGCTTGCGAAGGCGATTTTTTA AAGACTTCTTTCAATATGTACTTCTCTACGAGCTCGGGTTAGGGATCGGC TCTAACGCACCCCGAAAAGTTGCTTCATAATACCGAAGAGTTCCAAGAAA AGAAAATAAACAGCAAGAAGCTGTCGCTATTCGTAGCCTTCAGTGTGTGT GGCTGGCCGCAGACAGAGACAAATGACAGTTTTACCACAAGAACAGACTC AGGACTTACTACGCACTACACGACCATGTGATTCATGCTAGCAGCATGCT ACAACAACGAAAAGCTCGTGCGAAGCGCATACCGTTGAAAGACGTTGAGG CTAGATCAGGAAAACGACTGCACGCCCCGGCCGTCTGAGATGCAAAAGTC CACCTCCACACAAACCATGACGTTTTCAACCTTCATCAGGATGAAGTGCA CACCGCCGCCGGTAGTTCAAGCCTGGCCAGTAGATGACGATATCAGCGAA GAACGGCTCGAAGAGACGACCGCAGGGGAAACCGTGCACCACCATCGAGG TGCCTTGCCCATGTGCTCGCCGATACCGGATCGGTCGGAGGTTGAGCGGG CTGGGGCAGGGGCCTCCAGCGGTAGTGCTAGTGCCCACGTAGCCAAACGA ATTGTCCCGCGACTCGCCGGTCTCGCGGACTACGCTATGCGGGCGTTTCT CACCGAGTGAGTGACGGTTCGTGATACGGTAACTACGAGATCTAGGCTGA AGATAAAACGCTAGCCGAATGTCGAGGCTTGAGATACACTTTTCTTCGGG ATAGGGATTTGACGATTTTGGTGACAAGAGACAACACAGGCTGTTTTCGC ATCGGGAAAACTGCGGACCACAGTTTTGAGACCGAGCCCTGCCGTCCGTC ACTGTTTTTCAGCACAGTCGTCGATACATTTCAAACTTTGATTCTCACAT GGTGATTTGCTGCCTCGCGACTGCTACCGACGACGGTGGACTTGTAGACC GGTGCCCAAGAAGTACGGGGCGATACGGTGTCGCGTCGCGCGGAAAGAGG GTGGCGGGTGGAACCCCATGGCGTCATCGGTCTACGGCATGCATCACATA GAGGTGAATAGTGTTGTGAGCAGTGCCAGTGATGAACAACCAAAGAACAA CAATTTGACTCCGGTATTCAGAAATTGAGACCCACCGCCAGCTTTCGCCT AGACGTCAATCGTTGGGGCACTTAATCCAGCCCCAACCAAAAGGATGCTG ACGACTTTGACAGCCCTCTTGTTCGCTGGATTCCAACCAAATCATCAAGT CGGTCACAGTACCCCCCGATATCCGCAGGGTGGCATGGTGTTCATGATGT CGGCGACACGACAACCTTTAAGCCGCACAGCAAATTACTACATCAGCGCG AGCCCCTACGTGGAAACGACCAAAGACACGGTAAGACAATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6225:347..8438-

>mRNA_Ecto-sp13_S_contig6225.16950.1 ID=mRNA_Ecto-sp13_S_contig6225.16950.1|Name=mRNA_Ecto-sp13_S_contig6225.16950.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2472bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6225:347..8438- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAATTTGTCGTGTCTTCCAGTGCTTGTGCGCACCCTCAGAAACACGG
CAGTGCTCTTGTGAATACACAGCACTTCGAGAGTCTCGTCAACCTTTTTG
GGGCCGCAGGTCTCTCCGTTGCCCTTGTCTTTGTGCCAAGAGTATTCCGC
ACCGGGCAGCTTCTCATGCCCCGGCATCTGACGCCAAAGCTCTATCCCGT
TCCTGCTCGTACGTTACTGTTCATTATTGCTCCTCTACAATACACCGCGT
GCATCTTGGAGATCGAGTTTGCAGACGTCGAAGAATTAATCAATCGCGAC
TTCGGGGTGATAGAGGTATACTTGAGGCTGTTCAGATGGCTAGTAAAACA
AATGAACGCTTGCACGGGCCTCCCATCCGATGAAAACAAAACGGCATGCG
TCAGCTCCATAGGGCTCTTGGACATGTTTGGGTCGGAAAACCTCGACCCC
AGCGGATTCGAGCAACTCTGCAAGAACTATGCTGTCGAGAAAATTCACGG
AAAGTTCCTTCAGGACGAGGTATGCTACGGGAAAGCCAAGGGCGGTGCCA
CCGGGGGAACGGTCCAAGCGTCGGCGGCAGCTGAGGTGGAGAGCAATCGA
CGGCTGTTGGCTATGTTTGAGGGTCCACTGGGCTTGATTCGTCTCGCCGA
CGACGAGTGCCTCTGCCCAGAAGGAAACGGCCAGTCTTTCGTGAACAAGC
TCCTTCTTCTCGCAGCTACGGAGAAAGGGACAGGGCAAGACTCACGGGAC
AATGGTGGCGCCTGTAGGGGTTGCTCTCGCTTGGTCTACGTTGGAGACGG
AGACGAAGACTGCCGCTGTCGCGGTGGTGCGGTCACCGGGGGCAGAAACA
GCGCGTGGCCGGCGTGCATTGACCCAAACAAGTCTGGGAACAGGCTAGCA
AACTCCTGTTTTCACATCAAGCACTTTGGAGGACCGGTGCGATACACCGC
GGCCGACCTGTTGGAGAAGAACAAGGGCGGGGTCGGGCAGGGTTTGCTTG
ATCTTCTTGACGATGTGTGCACCAACGACTTGGTTGGCAAGGGGTCGAGG
AGTAGCCGCTACAGGGATGGGCACCGGGCCAGCACAGTGGACGGCGCCGC
CGACCACCGGAGGCAAAACTTGCACCAGCGTAGGCTCAACGAGTCCGTCC
TGTCGCAGCACCGACGCCAGCTCACGGAATTATTGCGCGAAATCGAGGAC
ACCAAGGTTCGTCATATTGTCTGCATCAAGCCAAACGATCAGCTTTCTCC
CAACTTCCTCGACGGCCGAAACCTCCTTCGACAACTGTCCTCGGCGGGAG
TAGCGGCAGCAGCAGAAAGAGGTATCCTCTCGTTGCCATCCGGCAAGAGG
GTGGACAAAGAAGCGTTCTTCAACGACTTCAGGGTCGTCCCGGGGGCGAT
ACAGAGGGTCTTACACAACGAGGGAAATTGCTGCAAGCTGGGTCACGGCA
CCATATTCTTCAGGAAAGGTGTCTGGGAATCCCTTGAGCGACGAAGGGAA
GCGGTCGAACGGCGGGGGTGCGAGGCGATACAACGGATATGGCGACAACA
CGTCCGTCGTGTCAGAGTCAATGCCGAATGGCAAGCGCACCTTGCGGTCG
AAGCGGAGAAGAGGGCTGATCCTGACCGGCGACAATGGCAACTCGAGGAG
GAGAGGAAGCAGGCGTGGGAGAACCAAGCGAGCAAGAAAGCGAGCCAGAC
GGAACAGCAGGCACTCCAGGAGAGGGAACAGCTACAACGGTGGCAGGAAC
ACCGCTTGCAATCCGTCATCGTGTTGCAAGAGACCCCGTGCAGGCCAGCA
GCGGTCTTCGAGTCCTCACATGCGAACGTCGTTCGAGAGGCAAAGAGGGC
GCAAGAGGCAGCACAGGCCGCCACCGCTGAACAAGATAGAGCGTGGCGAT
TGCATTGCGAAGTGCTGGAGAAGGAAGCCAGGCTAGAGGCAGGGACAGCT
GCGGCGGAGAGAAATGCGCTGGATGATGCCAACAGGATGAAGTGCACACC
GCCGCCGGTAGTTCAAGCCTGGCCAGTAGATGACGATATCAGCGAAGAAC
GGCTCGAAGAGACGACCGCAGGGGAAACCGTGCACCACCATCGAGGTGCC
TTGCCCATGTGCTCGCCGATACCGGATCGGTCGGAGGTTGAGCGGGCTGG
GGCAGGGGCCTCCAGCGGTAGTGCTAGTGCCCACGTAGCCAAACGAATTG
TCCCGCGACTCGCCGGTCTCGCGGACTACGCTATGCGGGCGTTTCTCACC
GAACCGGTGCCCAAGAAGTACGGGGCGATACGGTGTCGCGTCGCGCGGAA
AGAGGGTGGCGGGTGGAACCCCATGGCGTCATCGGTCTACGGCATGCATC
ACATAGAGGGTGGCATGGTGTTCATGATGTCGGCGACACGACAACCTTTA
AGCCGCACAGCAAATTACTACATCAGCGCGAGCCCCTACGTGGAAACGAC
CAAAGACACGGTAAGACAATGA
back to top