mRNA_Ecto-sp13_S_contig6224.16949.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6224.16949.1
Unique NamemRNA_Ecto-sp13_S_contig6224.16949.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6224.16949.1 vs. uniprot
Match: A0A6H5JYJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ2_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.690e-21
Identity = 71/96 (73.96%), Postives = 77/96 (80.21%), Query Frame = -2 
Query:   33 KRETPLRLAVKENHIATVNVLLTEGADPNSGNLLXXXXXXXXXXXXXXXXXXXXDIEGWCVTGRTPLHWAAMFGSCAAMLTLLQLGAKVNSKDNEG 320
            +R TPL +AV+ENH++TV VLL EGADPNS NLL  XXXXXXXXXXXXXXXXXXDIE       TPLH  A FGSCAAMLTLLQLGA VNSK+N G
Sbjct:  144 ERRTPLYVAVRENHVSTVKVLLAEGADPNSLNLLLMXXXXXXXXXXXXXXXXXXDIERRTSRESTPLHATAAFGSCAAMLTLLQLGANVNSKENRG 239
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BLAST of mRNA_Ecto-sp13_S_contig6224.16949.1 vs. uniprot
Match: D7G2A3_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A3_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 7.420e-6
Identity = 34/82 (41.46%), Postives = 46/82 (56.10%), Query Frame = -2 
Query:   96 NKRETPLRLAVKENHIATVNVLLTEGADPN--SGN----LLXXXXXXXXXXXXXXXXXXXXDIEGWCVTGRTPLHWAAMFGS 323
            +K ETPLRLAV+ +H+ TV VLL+EGADP+  + N    LL                    +IEG   +GRTPL +AA++ S
Sbjct:  203 SKGETPLRLAVRGDHVTTVKVLLSEGADPHFRAANRPLKLLHVAAKRNRAAAIPALFEAGVNIEGRTSSGRTPLRYAAIYDS 284
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BLAST of mRNA_Ecto-sp13_S_contig6224.16949.1 vs. uniprot
Match: A0A3B6FW29_WHEAT (Uncharacterized protein n=3 Tax=Triticum TaxID=4564 RepID=A0A3B6FW29_WHEAT)

HSP 1 Score: 51.2 bits (121), Expect = 3.650e-5
Identity = 34/101 (33.66%), Postives = 46/101 (45.54%), Query Frame = -2 
Query:   12 ETPLRLAVKENHIATVNVLLTEGADPNSGNLLXXXXXXXXXXXXXXXXXXXXDIEGWCVTGRTPLHWAAMFGSCAAMLTLLQLGAKVNSKDNEGITPLSSA 314
            ETPL +++K  H+ T N+LLT GADP   +LL                            G T LH AA+ G    ++ LL+ G K+NS      TPL+ A
Sbjct:   74 ETPLYISIKNGHVGTANLLLTNGADPRIKSLL----------------------------GITTLHQAAIRGDLELVMILLENGVKLNSHSYTMGTPLACA 146
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6224.16949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JYJ2_9PHAE4.690e-2173.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2A3_ECTSI7.420e-641.46Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A3B6FW29_WHEAT3.650e-533.66Uncharacterized protein n=3 Tax=Triticum TaxID=456... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6224contigEcto-sp13_S_contig6224:7178..7503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size328
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463866.4623692-CDS-Ecto-sp13_S_contig6224:7177..75011681463866.4623692-CDS-Ecto-sp13_S_contig6224:7177..7501Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6224 7178..7501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6224.16949.1prot_Ecto-sp13_S_contig6224.16949.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6224 7178..7501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6224.16949.1

>prot_Ecto-sp13_S_contig6224.16949.1 ID=prot_Ecto-sp13_S_contig6224.16949.1|Name=mRNA_Ecto-sp13_S_contig6224.16949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
PKKHAEDNGVIPSLSFELTLAPSCKRVSMAAHEPNIAAQWSGVRPVTHQP
SISAPAPNSTRMVAALFSHAAIRSRFPELGSAPSVKSTFTVAMWFSFTAR
RRGVSRLL
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mRNA from alignment at Ecto-sp13_S_contig6224:7178..7503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6224.16949.1 ID=mRNA_Ecto-sp13_S_contig6224.16949.1|Name=mRNA_Ecto-sp13_S_contig6224.16949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=326bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6224:7178..7503+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGAAGAAACACGCCGAGGACAACGGAGTGATTCCTTCATTGTCCTTCGA
GTTGACCTTGGCTCCCAGTTGCAAGAGGGTCAGCATGGCTGCACATGAGC
CAAACATTGCCGCCCAATGGAGTGGGGTTCGTCCAGTCACACACCAACCT
TCGATATCGGCTCCGGCTCCGAACAGCACTCGGATGGTAGCCGCTTTGTT
CTCGCACGCTGCAATTCGCAGCAGATTTCCGGAGTTGGGATCAGCGCCTT
CGGTCAAAAGCACGTTCACGGTGGCAATGTGGTTCTCTTTCACCGCTAGA
CGGAGAGGAGTCTCTCGTTTGTTGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6224:7178..7503+

>mRNA_Ecto-sp13_S_contig6224.16949.1 ID=mRNA_Ecto-sp13_S_contig6224.16949.1|Name=mRNA_Ecto-sp13_S_contig6224.16949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6224:7178..7503+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGAAGAAACACGCCGAGGACAACGGAGTGATTCCTTCATTGTCCTTCGA
GTTGACCTTGGCTCCCAGTTGCAAGAGGGTCAGCATGGCTGCACATGAGC
CAAACATTGCCGCCCAATGGAGTGGGGTTCGTCCAGTCACACACCAACCT
TCGATATCGGCTCCGGCTCCGAACAGCACTCGGATGGTAGCCGCTTTGTT
CTCGCACGCTGCAATTCGCAGCAGATTTCCGGAGTTGGGATCAGCGCCTT
CGGTCAAAAGCACGTTCACGGTGGCAATGTGGTTCTCTTTCACCGCTAGA
CGGAGAGGAGTCTCTCGTTTGTTG
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