mRNA_Ecto-sp13_S_contig62194.16944.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62194.16944.1
Unique NamemRNA_Ecto-sp13_S_contig62194.16944.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Match: D7FJ97_ECTSI (Thylakoid lumenal protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ97_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 8.530e-19
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1
Query:    1 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGCRSL 111
            AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGCRSL
Sbjct:  163 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGCRSL 199          
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Match: A0A7S0WGW3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WGW3_9CRYP)

HSP 1 Score: 70.1 bits (170), Expect = 1.810e-13
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1
Query:    1 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGCRS 108
            AYMGDFD KNLCKNPTLKGTNP+T A TRASA CR+
Sbjct:  205 AYMGDFDAKNLCKNPTLKGTNPITGAKTRASAACRT 240          
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Match: A0A7R9Z7B4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z7B4_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 7.230e-13
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 1
Query:    1 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGC 102
            +YMGDFDQ+N+CKNPTLKG NPVT ADTR SAGC
Sbjct:  209 SYMGDFDQRNICKNPTLKGENPVTGADTRVSAGC 242          
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Match: A0A1Z5KF76_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KF76_FISSO)

HSP 1 Score: 68.2 bits (165), Expect = 1.190e-12
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1
Query:    1 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGCR 105
            AYMGDFD ++LCKNPTL+GTNPVT  DTRASAGC+
Sbjct:  226 AYMGDFDSRSLCKNPTLQGTNPVTGVDTRASAGCK 260          
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Match: A0A7S0EIA2_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EIA2_9CRYP)

HSP 1 Score: 67.0 bits (162), Expect = 2.500e-12
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 1
Query:    1 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGCR 105
             YMGDFD K +CKNPTL+GTNPVT ADTRASA CR
Sbjct:  202 TYMGDFDNKKICKNPTLQGTNPVTGADTRASASCR 236          
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Match: L1ICC6_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1ICC6_GUITC)

HSP 1 Score: 65.5 bits (158), Expect = 9.510e-12
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    1 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGCR 105
             YMGDFD K +CKNPTL+GTNPVT  DTRASA CR
Sbjct:  202 TYMGDFDNKKICKNPTLQGTNPVTGVDTRASASCR 236          
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Match: A0A7S0AL09_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AL09_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.230e-11
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 1
Query:    1 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGC 102
            AY+G FDQK LC+NPTLKG NP T ADT+ SAGC
Sbjct:   73 AYIGSFDQKQLCRNPTLKGENPTTGADTKFSAGC 106          
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Match: A0A7S1H2G8_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H2G8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 8.710e-11
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1
Query:    1 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGC 102
            AY+GDFD +NLCKNPTLKG N VT ADTR SAGC
Sbjct:  164 AYIGDFDIRNLCKNPTLKGENSVTGADTRLSAGC 197          
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Match: K8YV76_NANGC (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YV76_NANGC)

HSP 1 Score: 59.3 bits (142), Expect = 1.610e-10
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    1 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGCR 105
             YMG+F+ + LCKNPTLKGTNPVT A T+ SAGC+
Sbjct:   56 TYMGEFNLRELCKNPTLKGTNPVTQAPTKESAGCK 90          
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Match: K0RRJ5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RRJ5_THAOC)

HSP 1 Score: 62.0 bits (149), Expect = 1.920e-10
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 1
Query:    1 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGC 102
            AY+GDFD +NLCKNPTLKG NP+T ADTR SA C
Sbjct:  201 AYIGDFDIRNLCKNPTLKGENPLTGADTRLSANC 234          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ97_ECTSI8.530e-19100.00Thylakoid lumenal protein n=2 Tax=Ectocarpus TaxID... [more]
A0A7S0WGW3_9CRYP1.810e-1383.33Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7R9Z7B4_9STRA7.230e-1382.35Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A1Z5KF76_FISSO1.190e-1280.00Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S0EIA2_9CRYP2.500e-1280.00Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
L1ICC6_GUITC9.510e-1277.14Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7S0AL09_9STRA6.230e-1173.53Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S1H2G8_9STRA8.710e-1179.41Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
K8YV76_NANGC1.610e-1068.57Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
K0RRJ5_THAOC1.920e-1076.47Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62194contigEcto-sp13_S_contig62194:688..801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score78.6
Seed ortholog evalue6.8e-13
Seed eggNOG ortholog2880.D7FJ97
Model size114
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Pentapeptide repeats (9 copies)
EggNOG OGs28M7V@1,2QTR1@2759
Cds size108
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463865.8011909-UTR-Ecto-sp13_S_contig62194:687..6931681463865.8011909-UTR-Ecto-sp13_S_contig62194:687..693Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig62194 688..693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463865.8167157-CDS-Ecto-sp13_S_contig62194:693..8011681463865.8167157-CDS-Ecto-sp13_S_contig62194:693..801Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62194 694..801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62194.16944.1prot_Ecto-sp13_S_contig62194.16944.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62194 694..801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62194.16944.1

>prot_Ecto-sp13_S_contig62194.16944.1 ID=prot_Ecto-sp13_S_contig62194.16944.1|Name=mRNA_Ecto-sp13_S_contig62194.16944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=36bp
MGDFDQKNLCKNPTLKGTNPVTNADTRASAGCRSL*
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mRNA from alignment at Ecto-sp13_S_contig62194:688..801+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62194.16944.1 ID=mRNA_Ecto-sp13_S_contig62194.16944.1|Name=mRNA_Ecto-sp13_S_contig62194.16944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62194:688..801+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTACATGGGTGACTTCGACCAAAAGAACTTGTGCAAGAATCCGACCCT CAAGGGCACCAACCCCGTCACCAACGCGGATACGAGGGCCAGCGCTGGAT GCCGAAGTCTATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62194:688..801+

>mRNA_Ecto-sp13_S_contig62194.16944.1 ID=mRNA_Ecto-sp13_S_contig62194.16944.1|Name=mRNA_Ecto-sp13_S_contig62194.16944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62194:688..801+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGACTTCGACCAAAAGAACTTGTGCAAGAATCCGACCCTCAAGGG
CACCAACCCCGTCACCAACGCGGATACGAGGGCCAGCGCTGGATGCCGAA
GTCTATGA
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