mRNA_Ecto-sp13_S_contig62194.16944.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Match: D7FJ97_ECTSI (Thylakoid lumenal protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ97_ECTSI) HSP 1 Score: 83.2 bits (204), Expect = 8.530e-19 Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1
Query: 1 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGCRSL 111
AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGCRSL
Sbjct: 163 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGCRSL 199
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Match: A0A7S0WGW3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WGW3_9CRYP) HSP 1 Score: 70.1 bits (170), Expect = 1.810e-13 Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1
Query: 1 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGCRS 108
AYMGDFD KNLCKNPTLKGTNP+T A TRASA CR+
Sbjct: 205 AYMGDFDAKNLCKNPTLKGTNPITGAKTRASAACRT 240
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Match: A0A7R9Z7B4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z7B4_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 7.230e-13 Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 1
Query: 1 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGC 102
+YMGDFDQ+N+CKNPTLKG NPVT ADTR SAGC
Sbjct: 209 SYMGDFDQRNICKNPTLKGENPVTGADTRVSAGC 242
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Match: A0A1Z5KF76_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KF76_FISSO) HSP 1 Score: 68.2 bits (165), Expect = 1.190e-12 Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1
Query: 1 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGCR 105
AYMGDFD ++LCKNPTL+GTNPVT DTRASAGC+
Sbjct: 226 AYMGDFDSRSLCKNPTLQGTNPVTGVDTRASAGCK 260
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Match: A0A7S0EIA2_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EIA2_9CRYP) HSP 1 Score: 67.0 bits (162), Expect = 2.500e-12 Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 1
Query: 1 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGCR 105
YMGDFD K +CKNPTL+GTNPVT ADTRASA CR
Sbjct: 202 TYMGDFDNKKICKNPTLQGTNPVTGADTRASASCR 236
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Match: L1ICC6_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1ICC6_GUITC) HSP 1 Score: 65.5 bits (158), Expect = 9.510e-12 Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 1
Query: 1 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGCR 105
YMGDFD K +CKNPTL+GTNPVT DTRASA CR
Sbjct: 202 TYMGDFDNKKICKNPTLQGTNPVTGVDTRASASCR 236
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Match: A0A7S0AL09_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AL09_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 6.230e-11 Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 1
Query: 1 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGC 102
AY+G FDQK LC+NPTLKG NP T ADT+ SAGC
Sbjct: 73 AYIGSFDQKQLCRNPTLKGENPTTGADTKFSAGC 106
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Match: A0A7S1H2G8_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H2G8_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 8.710e-11 Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1
Query: 1 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGC 102
AY+GDFD +NLCKNPTLKG N VT ADTR SAGC
Sbjct: 164 AYIGDFDIRNLCKNPTLKGENSVTGADTRLSAGC 197
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Match: K8YV76_NANGC (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YV76_NANGC) HSP 1 Score: 59.3 bits (142), Expect = 1.610e-10 Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1
Query: 1 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGCR 105
YMG+F+ + LCKNPTLKGTNPVT A T+ SAGC+
Sbjct: 56 TYMGEFNLRELCKNPTLKGTNPVTQAPTKESAGCK 90
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Match: K0RRJ5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RRJ5_THAOC) HSP 1 Score: 62.0 bits (149), Expect = 1.920e-10 Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 1
Query: 1 AYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGC 102
AY+GDFD +NLCKNPTLKG NP+T ADTR SA C
Sbjct: 201 AYIGDFDIRNLCKNPTLKGENPLTGADTRLSANC 234 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62194.16944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig62194.16944.1 >prot_Ecto-sp13_S_contig62194.16944.1 ID=prot_Ecto-sp13_S_contig62194.16944.1|Name=mRNA_Ecto-sp13_S_contig62194.16944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=36bp MGDFDQKNLCKNPTLKGTNPVTNADTRASAGCRSL*back to top mRNA from alignment at Ecto-sp13_S_contig62194:688..801+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig62194.16944.1 ID=mRNA_Ecto-sp13_S_contig62194.16944.1|Name=mRNA_Ecto-sp13_S_contig62194.16944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62194:688..801+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62194:688..801+ >mRNA_Ecto-sp13_S_contig62194.16944.1 ID=mRNA_Ecto-sp13_S_contig62194.16944.1|Name=mRNA_Ecto-sp13_S_contig62194.16944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62194:688..801+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |