mRNA_Ecto-sp13_S_contig62188.16943.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62188.16943.1
Unique NamemRNA_Ecto-sp13_S_contig62188.16943.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig62188.16943.1 vs. uniprot
Match: D7FTX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTX6_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 3.310e-65
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 1 
Query:    4 AGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQAPKKFHRFETAINHIVELGASWLLLVPVRALSLLGGGIQTGFQLAIIISGNLSFLNYLTILPFIWCFDD 321
            AGLIKIRGDKVWKDLTA DYHYETQPLPNPISYFLHQAPKKFHRFETA+NHIVELGASWLLL PVRALSLL GGIQTGFQLAIIISGNLSFLNYLTILPFIWCFDD
Sbjct:  205 AGLIKIRGDKVWKDLTAMDYHYETQPLPNPISYFLHQAPKKFHRFETAMNHIVELGASWLLLAPVRALSLLAGGIQTGFQLAIIISGNLSFLNYLTILPFIWCFDD 310
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BLAST of mRNA_Ecto-sp13_S_contig62188.16943.1 vs. uniprot
Match: UPI0014258091 (lipase maturation factor 1-like isoform X1 n=2 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014258091)

HSP 1 Score: 159 bits (403), Expect = 5.310e-44
Identity = 71/107 (66.36%), Postives = 88/107 (82.24%), Query Frame = 1 
Query:    1 GAGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQAPKKFHRFETAINHIVELGASWLLLVPVRALSLLGGGIQTGFQLAIIISGNLSFLNYLTILPFIWCFDD 321
            GAGLIKIRGD+ W+DLT  +YHYETQP+PNP+SY+LHQ+P   H+FETA NH +ELGA WLL++P R   ++GG IQ  FQ+ +I+SGNLSFLN+LTILP I CFDD
Sbjct:  225 GAGLIKIRGDQCWRDLTCMNYHYETQPVPNPVSYYLHQSPDWMHQFETASNHFIELGAPWLLIIPWRPTLMIGGTIQVLFQVVLILSGNLSFLNWLTILPSICCFDD 331
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BLAST of mRNA_Ecto-sp13_S_contig62188.16943.1 vs. uniprot
Match: A0A8J1XFI2_OWEFU (Lipase maturation factor n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XFI2_OWEFU)

HSP 1 Score: 155 bits (393), Expect = 1.170e-42
Identity = 74/107 (69.16%), Postives = 85/107 (79.44%), Query Frame = 1 
Query:    1 GAGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQAPKKFHRFETAINHIVELGASWLLLVPVRALSLLGGGIQTGFQLAIIISGNLSFLNYLTILPFIWCFDD 321
            GAGLIKIRGDK W+DLT  DYHYETQ +PNP++YF+HQ+P  FHRFET  NH VEL A W +L+P R L + GG IQ  FQ+ IIISGNLSFLN+LTILP I CFDD
Sbjct:  223 GAGLIKIRGDKCWRDLTCMDYHYETQCVPNPMAYFMHQSPVIFHRFETLTNHFVELIAPWFILLPFRRLRIAGGVIQILFQVLIIISGNLSFLNWLTILPAIACFDD 329
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BLAST of mRNA_Ecto-sp13_S_contig62188.16943.1 vs. uniprot
Match: UPI00109BA4F8 (lipase maturation factor 1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BA4F8)

HSP 1 Score: 151 bits (381), Expect = 3.400e-42
Identity = 72/107 (67.29%), Postives = 85/107 (79.44%), Query Frame = 1 
Query:    1 GAGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQAPKKFHRFETAINHIVELGASWLLLVPVRALSLLGGGIQTGFQLAIIISGNLSFLNYLTILPFIWCFDD 321
            GAGLIKIRGDK W+DLT  +YHYETQP+PNPISY+LHQ+P+ FH+FET  NH VEL A +LL +P R   + GG IQ  FQ+ +IISGNLSFLN+LTILP I C DD
Sbjct:   34 GAGLIKIRGDKCWRDLTCMNYHYETQPVPNPISYYLHQSPEIFHKFETLSNHFVELAAPFLLFLP-RPFRITGGIIQIAFQVILIISGNLSFLNWLTILPSIMCLDD 139
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BLAST of mRNA_Ecto-sp13_S_contig62188.16943.1 vs. uniprot
Match: A0A8B8EBQ5_CRAVI (Lipase maturation factor n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8EBQ5_CRAVI)

HSP 1 Score: 154 bits (389), Expect = 4.100e-42
Identity = 72/107 (67.29%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:    1 GAGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQAPKKFHRFETAINHIVELGASWLLLVPVRALSLLGGGIQTGFQLAIIISGNLSFLNYLTILPFIWCFDD 321
            GAGLIKIRGD+ W+DLT  +YHYETQP+PNPISYF+HQ+P+ FH+FET  NH VEL A W LL P R L ++GG IQ  FQ+ +IISGNLSFLN+LTI+P + CFDD
Sbjct:  216 GAGLIKIRGDQCWRDLTCMNYHYETQPVPNPISYFMHQSPEIFHKFETLTNHFVELVAPWFLLGP-RRLCMIGGAIQILFQVVLIISGNLSFLNWLTIVPSLACFDD 321
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BLAST of mRNA_Ecto-sp13_S_contig62188.16943.1 vs. uniprot
Match: A7RJW9_NEMVE (Lipase maturation factor n=4 Tax=Nematostella vectensis TaxID=45351 RepID=A7RJW9_NEMVE)

HSP 1 Score: 150 bits (380), Expect = 2.860e-41
Identity = 71/107 (66.36%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:    1 GAGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQAPKKFHRFETAINHIVELGASWLLLVPVRALSLLGGGIQTGFQLAIIISGNLSFLNYLTILPFIWCFDD 321
            GAGLIKIRGD+ W+DLT  +YHYETQP+PNPISY++H +P+ FH+FET +NH VEL A +LL +P R L + GG IQ  FQ+ +IISGNLSFLN+LTILP I CFDD
Sbjct:  132 GAGLIKIRGDQCWRDLTCMNYHYETQPVPNPISYYMHHSPELFHKFETLVNHFVELVAPFLLFLP-RPLRIWGGLIQIAFQVILIISGNLSFLNWLTILPSIACFDD 237
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BLAST of mRNA_Ecto-sp13_S_contig62188.16943.1 vs. uniprot
Match: A0A433TXT1_ELYCH (Lipase maturation factor n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433TXT1_ELYCH)

HSP 1 Score: 151 bits (382), Expect = 5.350e-41
Identity = 70/107 (65.42%), Postives = 83/107 (77.57%), Query Frame = 1 
Query:    1 GAGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQAPKKFHRFETAINHIVELGASWLLLVPVRALSLLGGGIQTGFQLAIIISGNLSFLNYLTILPFIWCFDD 321
            GAGLIKIRGDK W+DLT  +YHYETQP+PNPISYFLHQ+P+  H+FE   NH +EL A  LL  P R L +LGG +Q  FQ  +I+SGNLSFLN+LTILP + CFDD
Sbjct:  249 GAGLIKIRGDKCWRDLTCMNYHYETQPVPNPISYFLHQSPQAMHKFEVLSNHFIELVAPVLLFFPHRGLCMLGGALQIFFQAVLIVSGNLSFLNWLTILPSLACFDD 355
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BLAST of mRNA_Ecto-sp13_S_contig62188.16943.1 vs. uniprot
Match: K1QJR5_CRAGI (Lipase maturation factor n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1QJR5_CRAGI)

HSP 1 Score: 150 bits (380), Expect = 7.750e-41
Identity = 70/107 (65.42%), Postives = 85/107 (79.44%), Query Frame = 1 
Query:    1 GAGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQAPKKFHRFETAINHIVELGASWLLLVPVRALSLLGGGIQTGFQLAIIISGNLSFLNYLTILPFIWCFDD 321
            GAGLIKIRGD+ W+DLT  +YHYETQP+PNPISYF+HQ+P+ FH FET  NH VEL   W L+ P R L ++GG IQ  FQ+ +IISGNLSFLN+LTI+P + CFDD
Sbjct:  216 GAGLIKIRGDQCWRDLTCMNYHYETQPVPNPISYFMHQSPEIFHMFETLTNHFVELVVPWFLIGP-RRLCMIGGAIQILFQVVLIISGNLSFLNWLTIVPSLACFDD 321
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BLAST of mRNA_Ecto-sp13_S_contig62188.16943.1 vs. uniprot
Match: UPI001BB26A20 (lipase maturation factor 1-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB26A20)

HSP 1 Score: 150 bits (380), Expect = 1.120e-40
Identity = 70/107 (65.42%), Postives = 86/107 (80.37%), Query Frame = 1 
Query:    1 GAGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQAPKKFHRFETAINHIVELGASWLLLVPVRALSLLGGGIQTGFQLAIIISGNLSFLNYLTILPFIWCFDD 321
            GAGLIKIRGD+ W+DLT  +YHYETQP+PNP+SY++HQ+P+ FH+FET  NH +EL A   LL+P R L L GG +Q  FQ+ +IISGNLSFLN+LTILP I CFDD
Sbjct:  231 GAGLIKIRGDQCWRDLTCMNYHYETQPVPNPMSYYMHQSPEWFHKFETLSNHFIELVAPAFLLIPWRPLRLTGGILQVLFQVTLIISGNLSFLNWLTILPAISCFDD 337
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BLAST of mRNA_Ecto-sp13_S_contig62188.16943.1 vs. uniprot
Match: UPI0018D7266A (lipase maturation factor 1-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D7266A)

HSP 1 Score: 150 bits (380), Expect = 1.500e-40
Identity = 70/107 (65.42%), Postives = 83/107 (77.57%), Query Frame = 1 
Query:    1 GAGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQAPKKFHRFETAINHIVELGASWLLLVPVRALSLLGGGIQTGFQLAIIISGNLSFLNYLTILPFIWCFDD 321
            GAGLIKIRGD+ W+DLT  +YHYETQP+PNPISY+LHQ P+  H+FET  NH VEL     +L+P R   LL GGIQ  FQ+ +IISGNLSFLN+LTILP + CFDD
Sbjct:  268 GAGLIKIRGDQCWRDLTCMNYHYETQPVPNPISYYLHQTPEAMHKFETLSNHFVELVVPIFILIPWRPTMLLAGGIQIFFQVVLIISGNLSFLNWLTILPSLCCFDD 374
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62188.16943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTX6_ECTSI3.310e-6596.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI00142580915.310e-4466.36lipase maturation factor 1-like isoform X1 n=2 Tax... [more]
A0A8J1XFI2_OWEFU1.170e-4269.16Lipase maturation factor n=1 Tax=Owenia fusiformis... [more]
UPI00109BA4F83.400e-4267.29lipase maturation factor 1 n=1 Tax=Exaiptasia diap... [more]
A0A8B8EBQ5_CRAVI4.100e-4267.29Lipase maturation factor n=1 Tax=Crassostrea virgi... [more]
A7RJW9_NEMVE2.860e-4166.36Lipase maturation factor n=4 Tax=Nematostella vect... [more]
A0A433TXT1_ELYCH5.350e-4165.42Lipase maturation factor n=1 Tax=Elysia chlorotica... [more]
K1QJR5_CRAGI7.750e-4165.42Lipase maturation factor n=2 Tax=Crassostrea gigas... [more]
UPI001BB26A201.120e-4065.42lipase maturation factor 1-like n=1 Tax=Lytechinus... [more]
UPI0018D7266A1.500e-4065.42lipase maturation factor 1-like n=1 Tax=Patiria mi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62188contigEcto-sp13_S_contig62188:12..648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score213.4
Seed ortholog evalue5.2e-53
Seed eggNOG ortholog2880.D7FTX6
Model size321
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.protein glycosylation in Golgi
EggNOG OGs28KNS@1,2QT4H@2759
Cds size321
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463865.7433732-CDS-Ecto-sp13_S_contig62188:11..1451681463865.7433732-CDS-Ecto-sp13_S_contig62188:11..145Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62188 12..145 +
1681463865.763865-CDS-Ecto-sp13_S_contig62188:461..6481681463865.763865-CDS-Ecto-sp13_S_contig62188:461..648Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62188 462..648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62188.16943.1prot_Ecto-sp13_S_contig62188.16943.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62188 12..648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62188.16943.1

>prot_Ecto-sp13_S_contig62188.16943.1 ID=prot_Ecto-sp13_S_contig62188.16943.1|Name=mRNA_Ecto-sp13_S_contig62188.16943.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
GAGLIKIRGDKVWKDLTATDYHYETQPLPNPISYFLHQAPKKFHRFETAI
NHIVELGASWLLLVPVRALSLLGGGIQTGFQLAIIISGNLSFLNYLTILP
FIWCFDD
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mRNA from alignment at Ecto-sp13_S_contig62188:12..648+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62188.16943.1 ID=mRNA_Ecto-sp13_S_contig62188.16943.1|Name=mRNA_Ecto-sp13_S_contig62188.16943.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=637bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62188:12..648+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCGGGTCTGATCAAGATCAGAGGGGACAAGGTTTGGAAGGACCTCAC
GGCGACGGACTACCACTACGAGACGCAGCCACTGCCGAACCCGATCTCTT
ACTTCCTTCACCAAGCGCCCAAGAAGTTTCACAGGTCACTGTACGGGCCA
GTACTACTGCGTCTTTCGTACCTAGTCGGTCCAGCACAACCGTTTTTTAC
TTCTCTCCACGTCCGACATGCCCGTGGTTTGTGCCACGCAAACATTTCTG
CGCTGACCTGGGTACCAAGAAGATGGCCTACCCGCGAAAGCTCTATCGAG
AACATCTGTCAACAATCTCAGCGGTGGTGGATGGGAAGGCTTGTGTGACC
TTCCCGTACGCGTGTCTACGCATGTGATGCACCATATGTGCACATGTGCC
ATGTTTGCACATCCTTAAAGTAACTCTTGTTGTTTGCTACGTGGCGGCAG
GTTTGAGACGGCGATTAACCACATCGTGGAGCTCGGGGCGTCGTGGCTGC
TGCTTGTACCGGTTCGTGCCCTGAGCTTGCTGGGCGGGGGGATTCAGACC
GGTTTCCAGCTCGCCATCATCATCTCTGGTAACCTGTCGTTCCTGAATTA
CTTGACGATCCTCCCCTTCATCTGGTGCTTCGATGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62188:12..648+

>mRNA_Ecto-sp13_S_contig62188.16943.1 ID=mRNA_Ecto-sp13_S_contig62188.16943.1|Name=mRNA_Ecto-sp13_S_contig62188.16943.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62188:12..648+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCGGGTCTGATCAAGATCAGAGGGGACAAGGTTTGGAAGGACCTCAC
GGCGACGGACTACCACTACGAGACGCAGCCACTGCCGAACCCGATCTCTT
ACTTCCTTCACCAAGCGCCCAAGAAGTTTCACAGGTTTGAGACGGCGATT
AACCACATCGTGGAGCTCGGGGCGTCGTGGCTGCTGCTTGTACCGGTTCG
TGCCCTGAGCTTGCTGGGCGGGGGGATTCAGACCGGTTTCCAGCTCGCCA
TCATCATCTCTGGTAACCTGTCGTTCCTGAATTACTTGACGATCCTCCCC
TTCATCTGGTGCTTCGATGAC
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