prot_Ecto-sp13_S_contig62171.16941.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig62171.16941.1
Unique Nameprot_Ecto-sp13_S_contig62171.16941.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length58
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig62171.16941.1 vs. uniprot
Match: A0A6H5KZX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZX0_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 4.710e-28
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 0 
Query:    2 EVSHTPGVRRSGRHRMAPLKFWRGDNIQYGVDEKGLQVAEGIVKGPARPEPSTTSR 57
            EVSHTPGVRRSGR R+APLKFWRGDNIQYGVDEKGLQVAEGIVKGPA PEPS+TSR
Sbjct:  655 EVSHTPGVRRSGRQRVAPLKFWRGDNIQYGVDEKGLQVAEGIVKGPALPEPSSTSR 710
[Close]
BLAST of mRNA_Ecto-sp13_S_contig62171.16941.1 vs. uniprot
Match: D8LJZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ6_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 3.040e-27
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 0 
Query:    2 EVSHTPGVRRSGRHRMAPLKFWRGDNIQYGVDEKGLQVAEGIVKGPARPEPSTTSR 57
            EVSHTPGVRRSGR R+APLKFWRGDNIQYGVDEKGLQVAEGIVKGPA PEPS+ SR
Sbjct:  557 EVSHTPGVRRSGRQRVAPLKFWRGDNIQYGVDEKGLQVAEGIVKGPALPEPSSPSR 612
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62171.16941.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZX0_9PHAE4.710e-2892.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJZ6_ECTSI3.040e-2791.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62171contigEcto-sp13_S_contig62171:503..676 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62171.16941.1mRNA_Ecto-sp13_S_contig62171.16941.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig62171 503..676 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig62171.16941.1 ID=prot_Ecto-sp13_S_contig62171.16941.1|Name=mRNA_Ecto-sp13_S_contig62171.16941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
PEVSHTPGVRRSGRHRMAPLKFWRGDNIQYGVDEKGLQVAEGIVKGPARP
EPSTTSR*
back to top