mRNA_Ecto-sp13_S_contig62171.16941.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62171.16941.1
Unique NamemRNA_Ecto-sp13_S_contig62171.16941.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig62171.16941.1 vs. uniprot
Match: A0A6H5KZX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZX0_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 4.710e-28
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    4 EVSHTPGVRRSGRHRMAPLKFWRGDNIQYGVDEKGLQVAEGIVKGPARPEPSTTSR 171
            EVSHTPGVRRSGR R+APLKFWRGDNIQYGVDEKGLQVAEGIVKGPA PEPS+TSR
Sbjct:  655 EVSHTPGVRRSGRQRVAPLKFWRGDNIQYGVDEKGLQVAEGIVKGPALPEPSSTSR 710
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BLAST of mRNA_Ecto-sp13_S_contig62171.16941.1 vs. uniprot
Match: D8LJZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ6_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 3.040e-27
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:    4 EVSHTPGVRRSGRHRMAPLKFWRGDNIQYGVDEKGLQVAEGIVKGPARPEPSTTSR 171
            EVSHTPGVRRSGR R+APLKFWRGDNIQYGVDEKGLQVAEGIVKGPA PEPS+ SR
Sbjct:  557 EVSHTPGVRRSGRQRVAPLKFWRGDNIQYGVDEKGLQVAEGIVKGPALPEPSSPSR 612
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62171.16941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZX0_9PHAE4.710e-2892.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJZ6_ECTSI3.040e-2791.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62171contigEcto-sp13_S_contig62171:503..676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score112.8
Seed ortholog evalue5.2e-23
Seed eggNOG ortholog2880.D8LJZ6
Model size174
KEGG koko:K11497
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs29KWX@1,2RU66@2759
Cds size174
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463865.6444628-CDS-Ecto-sp13_S_contig62171:502..6761681463865.6444628-CDS-Ecto-sp13_S_contig62171:502..676Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62171 503..676 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62171.16941.1prot_Ecto-sp13_S_contig62171.16941.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62171 503..676 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62171.16941.1

>prot_Ecto-sp13_S_contig62171.16941.1 ID=prot_Ecto-sp13_S_contig62171.16941.1|Name=mRNA_Ecto-sp13_S_contig62171.16941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
PEVSHTPGVRRSGRHRMAPLKFWRGDNIQYGVDEKGLQVAEGIVKGPARP
EPSTTSR*
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mRNA from alignment at Ecto-sp13_S_contig62171:503..676-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62171.16941.1 ID=mRNA_Ecto-sp13_S_contig62171.16941.1|Name=mRNA_Ecto-sp13_S_contig62171.16941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62171:503..676- (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGAGGTGAGCCACACCCCGGGCGTGAGACGGTCAGGCAGGCACCGCAT
GGCCCCGCTCAAGTTCTGGCGCGGGGACAACATCCAGTACGGGGTGGACG
AGAAGGGCCTGCAGGTGGCGGAGGGCATCGTGAAGGGGCCGGCCCGGCCC
GAGCCATCGACAACATCGAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62171:503..676-

>mRNA_Ecto-sp13_S_contig62171.16941.1 ID=mRNA_Ecto-sp13_S_contig62171.16941.1|Name=mRNA_Ecto-sp13_S_contig62171.16941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62171:503..676- (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGAGGTGAGCCACACCCCGGGCGTGAGACGGTCAGGCAGGCACCGCAT
GGCCCCGCTCAAGTTCTGGCGCGGGGACAACATCCAGTACGGGGTGGACG
AGAAGGGCCTGCAGGTGGCGGAGGGCATCGTGAAGGGGCCGGCCCGGCCC
GAGCCATCGACAACATCGAGGTAA
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