mRNA_Ecto-sp13_S_contig6217.16940.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6217.16940.1
Unique NamemRNA_Ecto-sp13_S_contig6217.16940.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6217.16940.1 vs. uniprot
Match: D7G5G0_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G0_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.180e-25
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:    3 MANMFKCLGAEDDTVAKGVLEGKVKCLVELLVSKLAANPSSKFFVGDAPTIADLQ 167
            +ANMFKC+GAEDDTVAKGVLEGKVK LVELLVSKLAANPSSKFFVG +PTIADLQ
Sbjct:   98 LANMFKCMGAEDDTVAKGVLEGKVKGLVELLVSKLAANPSSKFFVGTSPTIADLQ 152
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BLAST of mRNA_Ecto-sp13_S_contig6217.16940.1 vs. uniprot
Match: D7G537_ECTSI (Glutathione S-transferase n=4 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G537_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.690e-22
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 3 
Query:    3 MANMFKCLGAEDDTVAKGVLEGKVKCLVELLVSKLAANPSSKFFVGDAPTIADLQ 167
            MANMFKC+G EDDTVAK VLEGK+K LV +LV+KLAANPSSKFFVG++PTIADLQ
Sbjct:   98 MANMFKCMGQEDDTVAKEVLEGKIKTLVGMLVAKLAANPSSKFFVGNSPTIADLQ 152
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BLAST of mRNA_Ecto-sp13_S_contig6217.16940.1 vs. uniprot
Match: A0A6H5JNS9_9PHAE (GST C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS9_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.220e-19
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 3 
Query:    3 MANMFKCLGAEDDTVAKGVLEGKVKCLVELLVSKLAANPSSKFFVGDAPTIADLQ 167
            + NMFKC+G  DDTVAKGVLEGK+K LVE+LV+KLA N SSKFFVG++PTIA+LQ
Sbjct:  140 LTNMFKCMGQTDDTVAKGVLEGKIKTLVEMLVAKLATNQSSKFFVGNSPTIANLQ 194
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BLAST of mRNA_Ecto-sp13_S_contig6217.16940.1 vs. uniprot
Match: D7G5G1_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G1_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.160e-18
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 3 
Query:    3 MANMFKCLGAEDDTVAKGVLEGKVKCLVELLVSKLAANPSSKFFVGDAPTIADLQ 167
            MANMFKC+  +DDT+A G+LEGK+K LVE+L S+LAAN SSKFFVG  PTIADLQ
Sbjct:   98 MANMFKCVDQKDDTMANGLLEGKIKTLVEMLTSRLAANASSKFFVGHPPTIADLQ 152
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BLAST of mRNA_Ecto-sp13_S_contig6217.16940.1 vs. uniprot
Match: A0A6H5JE39_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE39_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.710e-17
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 3 
Query:    3 MANMFKCLGAEDDTVAKGVLEGKVKCLVELLVSKLAANPSSKFFVGDAPTIADLQ 167
            + NM KC G +DDTVAKGVL GK+K LV++LV+KLAANPSS FFVG++P IADLQ
Sbjct:  347 LTNMSKCTGQKDDTVAKGVLVGKIKTLVDMLVAKLAANPSSMFFVGNSPNIADLQ 401
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6217.16940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G5G0_ECTSI1.180e-2590.91Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
D7G537_ECTSI1.690e-2281.82Glutathione S-transferase n=4 Tax=Ectocarpus silic... [more]
A0A6H5JNS9_9PHAE1.220e-1974.55GST C-terminal domain-containing protein n=1 Tax=E... [more]
D7G5G1_ECTSI1.160e-1872.73Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
A0A6H5JE39_9PHAE3.710e-1770.91DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6217contigEcto-sp13_S_contig6217:6313..6968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463865.5707753-CDS-Ecto-sp13_S_contig6217:6312..64081681463865.5707753-CDS-Ecto-sp13_S_contig6217:6312..6408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6217 6313..6408 -
1681463865.594943-CDS-Ecto-sp13_S_contig6217:6897..69661681463865.594943-CDS-Ecto-sp13_S_contig6217:6897..6966Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6217 6898..6966 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463865.6094441-UTR-Ecto-sp13_S_contig6217:6966..69681681463865.6094441-UTR-Ecto-sp13_S_contig6217:6966..6968Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6217 6967..6968 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6217.16940.1prot_Ecto-sp13_S_contig6217.16940.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6217 6313..6966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6217.16940.1

>prot_Ecto-sp13_S_contig6217.16940.1 ID=prot_Ecto-sp13_S_contig6217.16940.1|Name=mRNA_Ecto-sp13_S_contig6217.16940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
MANMFKCLGAEDDTVAKGVLEGKVKCLVELLVSKLAANPSSKFFVGDAPT
IADLQ
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mRNA from alignment at Ecto-sp13_S_contig6217:6313..6968-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6217.16940.1 ID=mRNA_Ecto-sp13_S_contig6217.16940.1|Name=mRNA_Ecto-sp13_S_contig6217.16940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=656bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6217:6313..6968- (Ectocarpus species13 EcNAP12_S_4_19m)
TCATGGCCAACATGTTCAAGTGCTTGGGCGCGGAGGACGACACGGTCGCC
AAGGGAGTACTTGAGGGAAAGGTGGGTATGGGTCCGTGTGGCGCAAGGGT
TTAATAGCGGTGTCGGCGGATGTTGTCGTGGGTATGCATACGTACACGCT
AGTTATAGGCGAGATTTGTTTCGTTTTGCGGAGTTGTGTGCGGCGCGTGT
GGCGTGTCGGTTGGCGGTTGTTTCTTGGGCAAACGTGCGTATGCACGAGG
AGCGAGAGTTGTTTCGTCCGTATCGCAAGTTGAGTGTGGCGCAAGGATAA
CTGACCGTGTCGGTTGGCTGTTATATGTTGGGTAGTATGCGCATGTACAC
ACAGCGAGATTTTCTTCGTGAGGATACTACTGGTATCGGTTACTGGTCGT
ATCTTGGGGGTTAATATGGACATGTACGCGAAGCGAGATTTGTGCAGTGG
TTGGGGAGGGAGGACGACAGGGGCGAGCGGTTCGAAGGACGTCGACATGC
CCCGAGATAACGATCCACGACTGACTGGAATGCTATCCTATCTATATCCC
TTGGGTGCAGGTAAAGTGTTTGGTGGAGTTGCTCGTCTCCAAGCTTGCGG
CTAACCCGTCCTCCAAGTTCTTCGTTGGCGACGCCCCCACCATCGCGGAC
CTCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6217:6313..6968-

>mRNA_Ecto-sp13_S_contig6217.16940.1 ID=mRNA_Ecto-sp13_S_contig6217.16940.1|Name=mRNA_Ecto-sp13_S_contig6217.16940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6217:6313..6968- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAACATGTTCAAGTGCTTGGGCGCGGAGGACGACACGGTCGCCAA
GGGAGTACTTGAGGGAAAGGTAAAGTGTTTGGTGGAGTTGCTCGTCTCCA
AGCTTGCGGCTAACCCGTCCTCCAAGTTCTTCGTTGGCGACGCCCCCACC
ATCGCGGACCTCCAG
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