mRNA_Ecto-sp13_S_contig6216.16939.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6216.16939.1
Unique NamemRNA_Ecto-sp13_S_contig6216.16939.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6216.16939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6216contigEcto-sp13_S_contig6216:4818..5270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size453
Hectar predicted targeting categorysignal peptide
Exons1
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463865.5177233-UTR-Ecto-sp13_S_contig6216:4817..48841681463865.5177233-UTR-Ecto-sp13_S_contig6216:4817..4884Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6216 4818..4884 +
1681463865.5406306-UTR-Ecto-sp13_S_contig6216:5238..52701681463865.5406306-UTR-Ecto-sp13_S_contig6216:5238..5270Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6216 5239..5270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463865.5296223-CDS-Ecto-sp13_S_contig6216:4884..52381681463865.5296223-CDS-Ecto-sp13_S_contig6216:4884..5238Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6216 4885..5238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6216.16939.1prot_Ecto-sp13_S_contig6216.16939.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6216 4885..5238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6216.16939.1

>prot_Ecto-sp13_S_contig6216.16939.1 ID=prot_Ecto-sp13_S_contig6216.16939.1|Name=mRNA_Ecto-sp13_S_contig6216.16939.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp
MTRTPAKPVIIVFSGLLMLIYSPMYQVSTSVQQHATLCFGGDGLSSCCSM
SAVSSRRTKKTMLTAAAVDYSSLQENRHVLLLLLSSPQYQPFVAVSVEYL
HTSVPVQQTRKHSVATG*
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mRNA from alignment at Ecto-sp13_S_contig6216:4818..5270+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6216.16939.1 ID=mRNA_Ecto-sp13_S_contig6216.16939.1|Name=mRNA_Ecto-sp13_S_contig6216.16939.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6216:4818..5270+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTTATGAGGTGGGAGTGGGGGAAAATGTGAGTTGCGGTCTCGCAGGAT
CTCTAGTTTTTTTTTTCATGACACGAACCCCCGCAAAGCCGGTAATTATT
GTCTTTTCTGGGTTGTTGATGTTAATCTATTCTCCCATGTATCAAGTCAG
CACCTCCGTTCAGCAGCATGCTACTCTATGTTTTGGTGGTGACGGATTGT
CATCATGCTGCTCCATGTCCGCTGTGAGTAGCAGAAGAACAAAAAAAACG
ATGCTCACTGCTGCTGCTGTAGACTACAGTAGTTTACAGGAAAATCGTCA
TGTTTTGTTGTTGCTGTTGTCTTCACCGCAGTATCAACCGTTCGTTGCGG
TATCTGTTGAGTACCTCCATACATCCGTACCGGTCCAACAGACGCGGAAG
CATTCCGTGGCCACAGGCTAACTACCCAAAGTGGTGACGCACTTCGAAAC
GAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6216:4818..5270+

>mRNA_Ecto-sp13_S_contig6216.16939.1 ID=mRNA_Ecto-sp13_S_contig6216.16939.1|Name=mRNA_Ecto-sp13_S_contig6216.16939.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6216:4818..5270+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACACGAACCCCCGCAAAGCCGGTAATTATTGTCTTTTCTGGGTTGTT
GATGTTAATCTATTCTCCCATGTATCAAGTCAGCACCTCCGTTCAGCAGC
ATGCTACTCTATGTTTTGGTGGTGACGGATTGTCATCATGCTGCTCCATG
TCCGCTGTGAGTAGCAGAAGAACAAAAAAAACGATGCTCACTGCTGCTGC
TGTAGACTACAGTAGTTTACAGGAAAATCGTCATGTTTTGTTGTTGCTGT
TGTCTTCACCGCAGTATCAACCGTTCGTTGCGGTATCTGTTGAGTACCTC
CATACATCCGTACCGGTCCAACAGACGCGGAAGCATTCCGTGGCCACAGG
CTAA
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