mRNA_Ecto-sp13_S_contig6216.16938.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6216.16938.1
Unique NamemRNA_Ecto-sp13_S_contig6216.16938.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6216.16938.1 vs. uniprot
Match: D7G1B9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B9_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.520e-9
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = -3 
Query:  101 RALLSLHQRPRCYLRSTPSIFPSPVGQSPILPGAARAR 214
            R+ LSLHQRPR YLRSTPSI  SPVGQSPILPGAA A+
Sbjct:   10 RSFLSLHQRPRFYLRSTPSIPSSPVGQSPILPGAAGAK 47
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6216.16938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1B9_ECTSI1.520e-981.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6216contigEcto-sp13_S_contig6216:3799..4602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size218
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463865.4697073-CDS-Ecto-sp13_S_contig6216:3798..38751681463865.4697073-CDS-Ecto-sp13_S_contig6216:3798..3875Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6216 3799..3875 +
1681463865.480705-CDS-Ecto-sp13_S_contig6216:4462..46011681463865.480705-CDS-Ecto-sp13_S_contig6216:4462..4601Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6216 4463..4601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6216.16938.1prot_Ecto-sp13_S_contig6216.16938.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6216 3799..4601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6216.16938.1

>prot_Ecto-sp13_S_contig6216.16938.1 ID=prot_Ecto-sp13_S_contig6216.16938.1|Name=mRNA_Ecto-sp13_S_contig6216.16938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
LELAEREEQRNGVPTNGLAARLKIERCSAKARIFAPSPRRVGSGFGPPER
EKCWGCCGGSILGAGASSGGLD
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mRNA from alignment at Ecto-sp13_S_contig6216:3799..4602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6216.16938.1 ID=mRNA_Ecto-sp13_S_contig6216.16938.1|Name=mRNA_Ecto-sp13_S_contig6216.16938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6216:3799..4602+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGAATTGGCGGAGCGAGAAGAACAGAGGAATGGCGTTCCTACAAACGG
ATTAGCAGCCCGGCTGAAGATTGAAAGGTGCTTGACGCGGGACACAGAGA
TAATCCTGAGGTTCATTTGGTTCAACAAGTCGCAGCTTCTCGTAATGTAG
CTGCTGGGCTGTGCGTGCTTTTTTTCGGTCTCCGCATCTGCTTCTTGGAG
CACCTCCTTCCGTTATGTCCAAAAACAAACGGCCTCTTGTCACCACCGAT
AACAAGGCTGACTATTTACTACACGGCAAAGCGGCCAAGAATCCCTTGTG
CTCTTCTTACTGAGGATGCACAGCAGCAGCAGCAGCAGCTACACAGGAGT
ACACGCCCGCCCGCGGCCATTTCCCGCTTCTGTCGAACGTTCTTGCCGCT
GATGGAGAGACTTTTTCTGCCCTCTGTCTGGCTCTCTTTCTTTTCGAGAT
CGCGCCGCGCCCATCACCCTTCCCCGCTAAAGAACAGAGACCCCACAGGC
ACAGAAAGCGGTGACGATGGTGCGCCTCTATCTTCGCAGCCACACGTACC
TTCGGCGCCGGTGAGAATTTACACAATTCTGAGAGCTCTGAGGGCAAAGC
TCGTACGGAATCTTGTGAGGCTCACCTCAGCAAATCTGCGATGACTTCCT
TTCGCTGAAAACAGGTGCTCCGCCAAGGCCCGCATCTTCGCGCCCTCGCC
GCGCCGGGTAGGATCGGGCTTTGGCCCACCGGAGAGGGAAAAATGCTGGG
GGTGCTGCGGAGGTAGCATCTTGGGCGCTGGTGCAAGCTCAGGAGGGCTC
GATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6216:3799..4602+

>mRNA_Ecto-sp13_S_contig6216.16938.1 ID=mRNA_Ecto-sp13_S_contig6216.16938.1|Name=mRNA_Ecto-sp13_S_contig6216.16938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6216:3799..4602+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGAATTGGCGGAGCGAGAAGAACAGAGGAATGGCGTTCCTACAAACGG
ATTAGCAGCCCGGCTGAAGATTGAAAGGTGCTCCGCCAAGGCCCGCATCT
TCGCGCCCTCGCCGCGCCGGGTAGGATCGGGCTTTGGCCCACCGGAGAGG
GAAAAATGCTGGGGGTGCTGCGGAGGTAGCATCTTGGGCGCTGGTGCAAG
CTCAGGAGGGCTCGAT
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