mRNA_Ecto-sp13_S_contig6215.16937.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6215.16937.1
Unique NamemRNA_Ecto-sp13_S_contig6215.16937.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6215.16937.1 vs. uniprot
Match: D7FTR3_ECTSI (Similar to Serine/threonine-protein kinase CTR1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTR3_ECTSI)

HSP 1 Score: 786 bits (2029), Expect = 3.390e-278
Identity = 397/430 (92.33%), Postives = 405/430 (94.19%), Query Frame = 2 
Query:    5 MAVSEQGNVGSSSXXXXXXXXXXXXXXKKEDAAQPKALEALVVGGNFTLNGKSTNVAQYDPVSESWYSRFEPQLYLYGKAAGMVSDLAVWRAGSHDANPYDLLYVVGAFDTICKACQQQYCSAGVWTGQVFDKIGDGLCGVPRATDSTMKMFASELTPKGNFFVGGTFESRVWSGEKFVDVRNVAVYQPRKNAWLPLQKNTGGGLGCNWAEARVMSLAWNDDDQVLYIGGKFNLVDSEYIQPGLAIWSNDTGIAAFPGGGVSFDTPWWGDSSWVFDGVVTSLTYDAATRSLYVAGAFDRVNGEAPCQSIAVWKMDEGSWACLHETSHGFSVVTSLLYTGSMLYVAGVPDEDSSWAETWRAGYGYAVERGSDSGSGSDSSAGGAVNATRYTIARMSQSPTRFHGKYEKWGEGDGVDDAGEEDVKAKEGSSS 1294
            MAVS++G VGSS XXXXXXXXXXXXXX   D  QP+ALEALVVGGNFTLNGKSTNVAQYDPVSESWYSRFEPQLYLYGKAAGMVSDLAVWRAGSHDANPYDLLYVVGAFDTICKACQQQYCSAGVWTGQVFDKIGDGLCGVPRATDSTMKMFASELTP+GNFFVGGTFESRVWSGEKFVDVRNVAVYQPRKNAWLPLQKNTGGGLGCNWAEARVMSLAWND+DQVLYIGGKFNLVDSEYIQPGLAIWSNDTGIAAFPGGGVSFDTPWWGDSSWVFDGV+TSLTYDAATRSLYVAGAFDRVNGEAPCQSIAVWK+DEGSWACLHETSHGFSVVTSLLYTGSMLYVAGVPDEDSSWAETWRAGYGYAVE             GGAVNAT+YTIARMSQSP RFHGKYEKWGEG G DDAGEED K KEGSSS
Sbjct:    1 MAVSKKGKVGSSXXXXXXXXXXXXXXXXXXDTTQPEALEALVVGGNFTLNGKSTNVAQYDPVSESWYSRFEPQLYLYGKAAGMVSDLAVWRAGSHDANPYDLLYVVGAFDTICKACQQQYCSAGVWTGQVFDKIGDGLCGVPRATDSTMKMFASELTPRGNFFVGGTFESRVWSGEKFVDVRNVAVYQPRKNAWLPLQKNTGGGLGCNWAEARVMSLAWNDEDQVLYIGGKFNLVDSEYIQPGLAIWSNDTGIAAFPGGGVSFDTPWWGDSSWVFDGVITSLTYDAATRSLYVAGAFDRVNGEAPCQSIAVWKVDEGSWACLHETSHGFSVVTSLLYTGSMLYVAGVPDEDSSWAETWRAGYGYAVESXXXXXXXXXXXGGGAVNATQYTIARMSQSPMRFHGKYEKWGEGGGADDAGEEDEKEKEGSSS 430
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BLAST of mRNA_Ecto-sp13_S_contig6215.16937.1 vs. uniprot
Match: A0A6H5J8D6_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8D6_9PHAE)

HSP 1 Score: 791 bits (2043), Expect = 1.480e-271
Identity = 398/425 (93.65%), Postives = 405/425 (95.29%), Query Frame = 2 
Query:    2 SMAVSEQGNVGSSSXXXXXXXXXXXXXXKKEDAAQPKALEALVVGGNFTLNGKSTNVAQYDPVSESWYSRFEPQLYLYGKAAGMVSDLAVWRAGSHDANPYDLLYVVGAFDTICKACQQQYCSAGVWTGQVFDK---IGDGLCGVPRATDSTMKMFASELTPKGNFFVGGTFESRVWSGEKFVDVRNVAVYQPRKNAWLPLQKNTGGGLGCNWAEARVMSLAWNDDDQVLYIGGKFNLVDSEYIQPGLAIWSNDTGIAAFPGGGVSFDTPWWGDSSWVFDGVVTSLTYDAATRSLYVAGAFDRVNGEAPCQSIAVWKMDEGSWACLHETSHGFSVVTSLLYTGSMLYVAGVPDEDSSWAETWRAGYGYAVERGSDSGSGSDSSAGGAVNATRYTIARMSQSPTRFHGKYEKWGEGDGVDDAGEED 1267
            SMAVSE+G VGSS XXXXXXXXXX    KKED  QPKALEALVVGGNFTLNGKSTNVAQYDPVSESWYSRFEPQLYLYGKAAGMVSDLAVWRAGSHDANPYDLLYVVGAFDTICKACQQQYCSAGVWTGQVFDK   IGDGLCGVPRATDS MKMFASELTP+GNFFVGGTFESRVWSGEKFVDVRNVAVYQPRKNAWLPLQKNTGGGLGCNWAEARVMSLAWND+DQVLYIGGKFNLVDSEYIQPGLAIWSNDTGIAAFPGGGVSFDTPWWGDSSWVFDGVVTSLTYDAATRSLYVAGAFDRVNGEAPCQSIAVWK+DEGSWACLHETSHGFSVVTSLLYTGSMLYVAGVPDEDSSWA+TWRAGYGYAVE GSDSGS   SS GGAVNATRYTIARMSQSP RFHGKYEKWG GDG ++AGEED
Sbjct:  281 SMAVSEKGKVGSSXXXXXXXXXXXSRGTKKEDTTQPKALEALVVGGNFTLNGKSTNVAQYDPVSESWYSRFEPQLYLYGKAAGMVSDLAVWRAGSHDANPYDLLYVVGAFDTICKACQQQYCSAGVWTGQVFDKAGGIGDGLCGVPRATDSAMKMFASELTPRGNFFVGGTFESRVWSGEKFVDVRNVAVYQPRKNAWLPLQKNTGGGLGCNWAEARVMSLAWNDEDQVLYIGGKFNLVDSEYIQPGLAIWSNDTGIAAFPGGGVSFDTPWWGDSSWVFDGVVTSLTYDAATRSLYVAGAFDRVNGEAPCQSIAVWKVDEGSWACLHETSHGFSVVTSLLYTGSMLYVAGVPDEDSSWADTWRAGYGYAVESGSDSGS--VSSGGGAVNATRYTIARMSQSPMRFHGKYEKWGGGDGAENAGEED 703
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BLAST of mRNA_Ecto-sp13_S_contig6215.16937.1 vs. uniprot
Match: A0A836CLE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLE2_9STRA)

HSP 1 Score: 379 bits (974), Expect = 5.960e-126
Identity = 203/377 (53.85%), Postives = 242/377 (64.19%), Query Frame = 2 
Query:  134 GGNFTLNGKSTNVAQYDPVSESWYSRFEPQLYLYGKAAGMVSDLAVWRAGSHDANPYDLLYVVGAFDTICKACQQQYCSAGVWTGQVFDKIGDGLCGVPRATDSTMKMFASELTPKGN-FFVGGTFESRVWSGEKFVDVRNVAVYQPRKNAWLPLQKNTGGGLGCNWAEARVMSLAWNDDDQVLYIGGKFNLVDSEYIQPGLA-------IWSNDTGIAAFPGGGVSFDTPWWGDSSWVFDGVVTSLTYDAATRSLYVAGAFDRVNGEAPCQSIAVWKMDEGSWACLHETSHGFSVVTSLLYTGSMLYVAGVPDEDSSWAETWRAGYGYAVERGSDSGSGSDSSAGGAVNATRYTIARMSQSPTRFHGKYEKWGEGD 1240
            GGNFTLNGK+TN+AQYD  S +WY+RFEPQLYLYG+AAG V+DL V       +  YD LYVVG+FDT+CK CQQ YCS G WTG+ FDK+GDGLC  PRATD TMK+  + LTP G  FFVGGTF+SRVWSGEKFV++ NVA + P          + GGGLGCNW    V+SLAWND  ++LYIGGKFN+VDS YI PGLA       ++SNDT                      V+DGV TSL YD  +RSL+VAG F  VNG  PC SIAVW+ +  SW CL+E  H FS++TSLLYT  MLYVAG+P   SSW+ T       A+    +  +G             Y IARMSQSP  F GKY++W  GD
Sbjct:   31 GGNFTLNGKTTNLAQYDTNSHTWYTRFEPQLYLYGEAAGEVNDLVV-----RPSTLYDSLYVVGSFDTVCKTCQQLYCSVGFWTGEEFDKVGDGLC--PRATDVTMKILTAALTPGGGAFFVGGTFQSRVWSGEKFVNIYNVAQHDPTNG-----NSSGGGGLGCNWCTVSVLSLAWNDQAKILYIGGKFNMVDSAYIAPGLAFNLICTLLYSNDT----------------------VYDGVATSLVYDEESRSLFVAGTFQLVNGR-PCSSIAVWREELRSWRCLYEEQHSFSLITSLLYTKKMLYVAGMPANASSWSTTSTT----AINPNPNRQNG----------PATYMIARMSQSPALFSGKYDQWTGGD 358
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BLAST of mRNA_Ecto-sp13_S_contig6215.16937.1 vs. uniprot
Match: A0A7R9YBX3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBX3_9STRA)

HSP 1 Score: 273 bits (699), Expect = 3.050e-80
Identity = 143/332 (43.07%), Postives = 194/332 (58.43%), Query Frame = 2 
Query:  122 ALVVGGNFTLNG-------KSTNVAQYDPVSES------WYSRFEPQLYLYGKAAGMVSDLAVWRAGSHDANP-YDLLYVVGAFDTICKACQQQYCSAGVWTGQVFDKIGDGLCGVPRATDSTMKMFASELTPKGNFFVGGTFESRVWSGEKFVDVRNVAVYQPRKNAWLPLQKNTGGGLGCNWAEARVMSLAWNDDDQVLYIGGKFNLVDSEYIQPGLAIWSNDTGIAAFPGGGVSFDTPWWGDSSWVFDGVVTSLTYDAATRSLYVAGAFDRVNGEAPCQSIAVWKMDEGSWACLHETSHGFSVVTSLLYTGSMLYVAGVPDEDSSWAET 1075
            +L++GGNFT+ G        + N+AQ+ P   S      W + +EP+LYLYG + G+V D+ V       A   YD L + GAFD+ C+ CQ QYCS G W G+   ++G GLC    A   T+K     +   G+ F GGTF SRVW+G +F+ V NVA +   K  W PLQ   GG L CNWA A V++LAW+  ++ L++GGKFN +DSE+I  GLA+W+++TG+  FPGGG+S            FDGV T+L  D     L VAG F+RV G+  C SIA W +    W CL E SH F +VT++L++   LYVAG     SSWA +
Sbjct:   25 SLLLGGNFTVRGFTQDEASLTANLAQFTPARGSKGRIGRWEAAYEPRLYLYGASGGVVLDMVVNDTAKRLAGEDYDALIIGGAFDSTCRTCQAQYCSVGAWEGRNLKQVGSGLCARSLAPSMTVKTLL--INEYGDLFAGGTFHSRVWNGNEFISVFNVAHFHADKQVWAPLQ---GGQLVCNWAAASVLTLAWDPVERNLFLGGKFNYIDSEWIPAGLAVWNDETGLRKFPGGGLSMGNT-------TFDGVATALALDPDAGILIVAGNFNRV-GDIVCDSIASWHLRHSYWTCLFEESHSFDIVTAMLFSSDALYVAGRASWRSSWASS 343
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BLAST of mRNA_Ecto-sp13_S_contig6215.16937.1 vs. uniprot
Match: A0A7S2RQF1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RQF1_9STRA)

HSP 1 Score: 229 bits (584), Expect = 3.590e-67
Identity = 126/341 (36.95%), Postives = 194/341 (56.89%), Query Frame = 2 
Query:  113 ALEALVVGGNFTLNGK--STNVAQYDPVSESWYSRFEPQLYLYGKAAGMVSDLAVWRA--GSHDANPYDLLYVVGAFDTICKACQQQYCSAGVWTGQVFDKIGDGLCGVPRATDSTMKMFASELTPKGNFFVGGTFESRVWSGEKFVDVRNVAVYQPRKNAWLPLQKNTGGGLGCNW-AEARVMSLAWNDDDQVLYIGGKFNLVDSEYIQPGLAIWSN----------DTGIAAFPGGGVSFDTPWWGDSSWVFDGVVTSLTYDAATRSLYVAGAFDRVNGEAPCQSIAVWKMDEGSWACLHETSHGFSVVTSLLYTGSM--LYVAGVPDEDSSWAETWRA 1084
            A + +VVGGNF+ +G   +TN+AQY+  S  W + +EP+L++YG A+G+V D+AV  +     D +  D+LY+VGAFDT CK CQ Q+CS G W G+  +K+G+GLC    +  +T++     L  +G+ FVGG+F +RVW+G  FV V +VA Y   +  WLPL   +   LGC+   +  V SLAW+  DQVL++GG F  + S+Y+  G+  W+           + G  +  GG VS                ++S+ YD++ + L+VAG F  VN  + C  +A + +  G W C+  +   F +V+SLLY      L+ +G+P  +SSW   WR+
Sbjct:   78 AQQTIVVGGNFSFSGSGVATNLAQYNRGSSDWSAEYEPRLFVYGAASGVVYDMAVNASDPSDPDGSTTDVLYMVGAFDTNCKTCQTQFCSVGRWDGETLEKVGEGLCSSQSSPTATIRTLV--LGNRGDLFVGGSFNTRVWNGSDFVFVDHVARYVGAQKRWLPLATRS---LGCSGDCQVSVSSLAWDAHDQVLFVGGTFTRLGSQYLPAGIVYWNQSKSAWHVPNLEAGPRSIMGGAVS----------------ISSMAYDSSQQELFVAGNFSAVN-HSSCYGLASFSLQSGRWQCVATSDFSFLLVSSLLYDAETKSLFASGLPLPNSSW---WRS 393
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BLAST of mRNA_Ecto-sp13_S_contig6215.16937.1 vs. uniprot
Match: A0A7S2LYW3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LYW3_9STRA)

HSP 1 Score: 171 bits (432), Expect = 2.170e-45
Identity = 110/352 (31.25%), Postives = 173/352 (49.15%), Query Frame = 2 
Query:  125 LVVGGNFTLNGKSTNVAQYDPVSESWYSRFEPQLYLYGKAAG------MVSDLAVWRAGSHDA------------------NPYDL-LYVVGAFDTICKACQQQYCSAGVWTGQVFDKIGDGLCGVPRATDSTMKMFASELTPKGNFFVGGTFESRVWSGEK--FVDVRNVAVYQPRKNAWLPLQKNTGGGLGCNWAEARVMSLAWNDDDQVLYIGGKFNLVDSEYIQPGLAIWSNDTG-IAAFPGGGVSFDTPWWGDSSWVFDGVVTSLTYDAATRSLYVAGAFDRVNGE-APCQSIAVWKMDEGSWACLHETSHGFSVVTS----LLYTGSMLYVAGVPDEDSSWAETWR 1081
            LV+ G   +   + N+AQ +  S  W  +   QL LY   +G      + +   V  + + +                   N + + L VVGAFDT  +  Q  YCS G W G    K+G+GLC    A    MK+ +S +    + +VGG+F+++VW+GEK  FV + N+A Y      WLPL     G + C+W    +++LAW+ + + L++ GKFN +D   I  GLA++  D+G + A PGGG++             DGV T++ +D     LYV GAF+R+      C  +A +++  GSW CL + +H  SV+ +    +L T   L VAG     ++W +  R
Sbjct:   12 LVIAGKMVVEDGACNIAQLNLKSGKWSLQQRIQLSLYNSYSGGEVYSMLANHTIVTNSNAKEFSKSEEPSSKGVDRPHVTDNAFGVDLIVVGAFDTTYRNSQTTYCSVGKWDGSQLSKVGEGLCN--SALSKGMKITSSAIAGPNDIYVGGSFQTQVWNGEKHEFVKIFNIAHYNSINQVWLPLPV---GQITCSWCTVTILALAWDSERRQLHVAGKFNAIDGYNIPAGLAVYDQDSGHLVAHPGGGLAMRNV-------TQDGVGTAIQFDQENGVLYVMGAFERLTATYEECLGLAAYEIKSGSWTCLADPAH--SVLPTGGGNMLLTPYGLLVAGRTANHTTWPDRSR 349
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BLAST of mRNA_Ecto-sp13_S_contig6215.16937.1 vs. uniprot
Match: K0R9T5_THAOC (Protein kinase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R9T5_THAOC)

HSP 1 Score: 172 bits (435), Expect = 6.080e-43
Identity = 110/351 (31.34%), Postives = 171/351 (48.72%), Query Frame = 2 
Query:  125 LVVGGNFTLNGKSTNVAQYDPVSESWYSRFEPQLYLYGKAAG-------------MVSDLAVWRAGSHDA------NPYDL-------LYVVGAFDTICKACQQQYCSAGVWTGQVFDKIGDGLCGVPRATDSTMKMFASELTPKGNFFVGGTFESRVWSGEK--FVDVRNVAVYQPRKNAWLPLQKNTGGGLGCNWAEARVMSLAWNDDDQVLYIGGKFNLVDSEYIQPGLAIWSNDTG-IAAFPGGGVSFDTPWWGDSSWVFDGVVTSLTYDAATRSLYVAGAFDRVNG-EAPCQSIAVWKMDEGSWACLHETSHGFSVVT--SLLYTGSMLYVAGVPDEDSSWAETWR 1081
            LV+ G  ++   + N+AQ +  +  W      QL LY   +G               S+   +  G  D        P+ +       + VVGAFDT  +  Q  YCS G W G    KIG+GLC    A    MK+ ++ +    + FVGG+F+++VW+GEK  FV + NVA Y      WLPL     G + C+W    +++LAW+ + + L++ GKFN +D   I  GLA++  D+G + A PGGG++         +   DGV T+L +D     LYV GAF+R+      C  +A +++  GSW C+ + +H        ++L T   L VAG   + ++W +  R
Sbjct:  230 LVIAGKMSVEDGACNIAQLNLKTGRWSLTQRIQLSLYNSYSGGEVYSLLANHTITTNSNAKEYGLGGSDGASSMQQQPHVMDNNFGGNMIVVGAFDTTYRNSQTTYCSVGKWDGTELSKIGEGLCN--SALSKGMKITSAAIAGPNDLFVGGSFQTQVWNGEKHEFVKIFNVAHYNAINEVWLPLPV---GQITCSWCTVTILALAWDSERRQLHVAGKFNAIDGGNIPAGLAVYDQDSGHLVAHPGGGLTM-------KNITQDGVGTALQFDHENGVLYVMGAFERLTATNEECLGLAAYEIKTGSWTCIADPAHSVQPTGGGNMLLTPYGLLVAGKTTKGTTWPDKTR 568
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6215.16937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FTR3_ECTSI3.390e-27892.33Similar to Serine/threonine-protein kinase CTR1 n=... [more]
A0A6H5J8D6_9PHAE1.480e-27193.65Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A836CLE2_9STRA5.960e-12653.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9YBX3_9STRA3.050e-8043.07Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
A0A7S2RQF1_9STRA3.590e-6736.95Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2LYW3_9STRA2.170e-4531.25Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
K0R9T5_THAOC6.080e-4331.34Protein kinase domain-containing protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6215contigEcto-sp13_S_contig6215:783..8106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score787.3
Seed ortholog evalue3.5e-225
Seed eggNOG ortholog2880.D7FTR3
Model size1297
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Ec32 ortholog descriptionsimilar to Serine/threonine-protein kinase CTR1
Ec32 orthologEc-14_001140.1
Cds size1293
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6215.16937.1prot_Ecto-sp13_S_contig6215.16937.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6215 783..8102 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463865.2906692-CDS-Ecto-sp13_S_contig6215:782..11451681463865.2906692-CDS-Ecto-sp13_S_contig6215:782..1145Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6215 783..1145 -
1681463865.3511062-CDS-Ecto-sp13_S_contig6215:1769..19271681463865.3511062-CDS-Ecto-sp13_S_contig6215:1769..1927Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6215 1770..1927 -
1681463865.3628137-CDS-Ecto-sp13_S_contig6215:2312..23961681463865.3628137-CDS-Ecto-sp13_S_contig6215:2312..2396Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6215 2313..2396 -
1681463865.3722672-CDS-Ecto-sp13_S_contig6215:3057..31421681463865.3722672-CDS-Ecto-sp13_S_contig6215:3057..3142Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6215 3058..3142 -
1681463865.3818521-CDS-Ecto-sp13_S_contig6215:4601..48051681463865.3818521-CDS-Ecto-sp13_S_contig6215:4601..4805Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6215 4602..4805 -
1681463865.3915732-CDS-Ecto-sp13_S_contig6215:5579..56971681463865.3915732-CDS-Ecto-sp13_S_contig6215:5579..5697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6215 5580..5697 -
1681463865.4052389-CDS-Ecto-sp13_S_contig6215:6733..68261681463865.4052389-CDS-Ecto-sp13_S_contig6215:6733..6826Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6215 6734..6826 -
1681463865.4224725-CDS-Ecto-sp13_S_contig6215:7914..81021681463865.4224725-CDS-Ecto-sp13_S_contig6215:7914..8102Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6215 7915..8102 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463865.4382706-UTR-Ecto-sp13_S_contig6215:8102..81061681463865.4382706-UTR-Ecto-sp13_S_contig6215:8102..8106Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6215 8103..8106 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6215.16937.1

>prot_Ecto-sp13_S_contig6215.16937.1 ID=prot_Ecto-sp13_S_contig6215.16937.1|Name=mRNA_Ecto-sp13_S_contig6215.16937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=431bp
MAVSEQGNVGSSSGSGGGGGGDGSGGKKKEDAAQPKALEALVVGGNFTLN
GKSTNVAQYDPVSESWYSRFEPQLYLYGKAAGMVSDLAVWRAGSHDANPY
DLLYVVGAFDTICKACQQQYCSAGVWTGQVFDKIGDGLCGVPRATDSTMK
MFASELTPKGNFFVGGTFESRVWSGEKFVDVRNVAVYQPRKNAWLPLQKN
TGGGLGCNWAEARVMSLAWNDDDQVLYIGGKFNLVDSEYIQPGLAIWSND
TGIAAFPGGGVSFDTPWWGDSSWVFDGVVTSLTYDAATRSLYVAGAFDRV
NGEAPCQSIAVWKMDEGSWACLHETSHGFSVVTSLLYTGSMLYVAGVPDE
DSSWAETWRAGYGYAVERGSDSGSGSDSSAGGAVNATRYTIARMSQSPTR
FHGKYEKWGEGDGVDDAGEEDVKAKEGSSSK
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mRNA from alignment at Ecto-sp13_S_contig6215:783..8106-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6215.16937.1 ID=mRNA_Ecto-sp13_S_contig6215.16937.1|Name=mRNA_Ecto-sp13_S_contig6215.16937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6215:783..8106- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCAATGGCCGTGTCCGAACAGGGTAATGTCGGCTCGAGCAGTGGCAGCG
GCGGTGGGGGGGGTGGTGACGGTAGTGGGGGGAAAAAGAAGGAGGATGCC
GCGCAGCCGAAAGCTCTGGAGGCGCTGGTAGTAGGGGGCAACTTCACGCT
CAACGGGAAGAGCACCAACGTCGCCCAGTACGACCCTGTCAGGTTAGTTG
CGCCTGTGTGTTTTGTGTGTGTCTTGATTATCATCATCGACCACGCTAAA
CCGGCCGCCCAATGTGTGTGTATCTGCGTGTGTGTGTGGTTCTTGAGTTC
GACGGCGTAAGGCTTTGTAGAAATACGAACAACGCTCTCTCTGCGTGTGT
ACGTGTTCCTCTCTGTATTTAGCTTTGGAGAGGCGTTATTAAGTAACGGC
GCGAGGTTTACCGTTCGCAAGAGTCCGCTAGCAAGCATGCGCAACTCCAA
CACGCTCTTTGTGTGTGTTGTCTGTTTGCTTGTTTCTTCAGTCATTTGCA
GTATTGGATCACCGCGTGTCATGAGAACGTGTTGTCACCGGCTCGCCATT
TTTCGAGGGTATTGACAAAGGTCGGCATTTGGCGGGGTAGGAAAGCGGGG
TAGGGCGTGAGGTCCACCCGGCTTTGCTCCGGTCTCTCGTTTTTTTCGCG
CGCACGTTGTGGCCATGCCGGGATACCATACCCATGTACCCATTCACTTA
GACGACGGCGATGATCGGTATGGCACATAGCAAAAATTCAACATGGTGTG
GTTTTGTCGGATTCGGCGGCAGTCCCCCGTGAGGGGCTGTTGACCATCGC
CCCCCCCCCCCCCCCCCCCTTAGATGCCGACGAAGGTGGGGGGCGCTGTT
CTGCTAGCGGGTGTGTACTGGACCAGCACCCAACCGGCAATATAAAGGGT
GCCCAGCAGATGGAGGGGAATAGGGGGGCTTTGTGTCGTGCACTGGTGAA
AAACCGCTCTATTAGCTTTCTTGCGAAGTATTTCCAACTGGGTGGTATCA
ATTGCAGCAGCGCCTTTTTTTTTTTTTGAGGGTCGCTAGATCTTTGACTC
GAAACATTCAACGATCCTCTCTGGTCCCTTGAGCCTAAAAGCAATACTGC
TGTACTGCTGCTACACAAATGTGAATATACACCACCTACGGCACCCCGCA
ATCTTAAGGCGATCAACACGTTCCTCGTATGCGTGTGCGTAAACTTTCGC
GGAAACATCCGTGCGTGTGCCTTGGATTAACGCATTGCTTTTTTTCTTGG
TTATTTTTGGCGTGGTTTCGTCCACTGCAGCGAGAGCTGGTACTCTCGCT
TCGAGCCTCAGCTGTACCTGTACGGAAAGGCCGCGGGAATGGTGTCGGAC
CTGGCCGTGTGGCGTGCTGGAAGGTGAGAGTCTTCCCCGAAACGCTGCTT
TGATCAAGGTTTGGTTGCACTCTTTCAAAAGCATACCAACCAAGCTTTGG
CCTGCCCTGAAAGTTTATCGTCATAACGCTTTCCACGTTTTGACTGCGCT
CTGTCAAAAGCATCCCGATCAAGCTTTGGCTTTGCTGTAAGGCTTTCCCT
GTCCGCACGTGGTGGCGACTCTGGACGCTGAGCTCTGTCGGTTGCTTTCA
CCCTCAAAAGCATCTAAGAACGAAAGCCTTAGCAAACATGCCGAAACACA
CGCAAGCATCCTCGCATTTTCCGCTGGAGTAACTTTGACGTTCGGTTCTG
TCATTTTGTAAGTGGGTCGGCGCGGTCGGTTCTAGTTGAAGCGATACCTG
CAGACACACACCAAGCTTTGGTTGCCCTATCCACGGCGTGGTTGAGTGAT
ACTTGCGGCTCTTCATGGGTTCTGTTCCTGAGTTTCCCATTCAGTTGTAG
TGGCGCACTTGGCTTTACCTTTTTATAACTATGACCTCCTGGCCGTGTGC
GTCGCTGTATAGCTTGGTGTAGGTGGGTGTGTTGTTCCTCTTCCGGTGAG
TTCCGGCGTGGACCGTCTTCTCTCGCTGTACAGTGCGCGTGTTTTTGAAC
GTCATTTCATGCCTCCGACCCCCTTCTTTCCGACCCCCCCCCCCCCACCC
CCCCGTCTCTCTCTCTTTCTGTCTGTCTCTCTCTCTGCCTCGCTTGAGTG
AGTGCCCTCTTTCCTTCCTTTTCTTTTGGCTCTGTCCTCCGTGCCCTCGG
TGCGCGTTTCTTCGTCCATCCTCTCGTTTTTCTTCCACATTCTTCTCTCC
CTCAGCGCCGCTCCCCCCCCCCCTTCTCCCTTCCCGCAGCCCGTTTTGAA
AACCTTTACATGAAAAAACTGTGAACCATTCCGGTCCCCAACACGTCTGA
TCTGTTGTCTTATCCTGCGCTCTGGTCTATGCGACCCTCCCCATGTGGTA
CTCTTGTCTTCCGTGTCTACTTCTCTCGTACCACGACATGCCATACCATG
CCCTCGCAGCCACGACGCCAACCCATACGACCTGCTCTACGTCGTCGGAG
CGTTCGATACCATCTGTAAGGCCTGCCAGCAGCAGTACTGCAGTGCGGGC
GTGTGGACGGGGCAGGTGTTCGACAAGGTGGGTGGAGTTTCTTCGTCATT
TTCCGTTTCTTTTTCTGTGCCCATCCTCGAAAACGAAAGAGGGGGCAACG
CCACTACCCTACCTTGTCCTTTCGTCGTCTTTACCCTTGAAAGTCTTGGA
TATGTGTGCACCACTGTAGGGCTGACCGTTCTTTTATTCTCAGATTCCCT
CTCTTGTTTTTGCGATCAAGGACCAGCCCGCTTTTTTGAGTACTTCGTAA
GCCGGGTTATTGGTTAAGTTTGTGGTGTGCCCCTGCCTTGTCTTTTTCTT
TTCTTTTTCTTTTCTTTGTCTTTTCTTTGTCTTGTCTTTTCTTGCTCTGT
GCCATGCCTGCAAGCGGTCAGGCTGTTACTAAAAGCCAAATGTGGACAAG
CGCGTTCCTGCGTCTATGATATCACTGGCCCGATACCTCGCTACACCATG
TACACATGATCCCACTCTAAGTGGTACGTATTGCCAGATTCAACGCAAGG
GACAGTTTACAACGTGTCGTCATCTCGTAATACCACACCCTAAAACATGA
CGCACACCTGTGGTGTGATACGCATCACACGACATAATTCACATACAGTC
GTGTGTCGTATCGTTGATGTTGTTGCTGTCTCTTCGTTTAAGAAACCGTT
CTGATCTCTTCTCGATACCTTCCATTTTCCGTACCACTCCAACTGATTGG
ACGCCTTCCGTGGTCGCAAGCCGACTACCCAAAAAGGGTACATTCATGTA
CATGCTTCTAAAACAGTACCCACGGCATCACATCTCGTCAAAACGCTTCA
GATCGGCGATGGCCTCTGCGGCGTGCCTCGGGCAACAGACTCTACCATGA
AGATGTTCGCATCGGAGCTGACCCCGAAGGGGAACTTCTTCGTGGGGGGC
ACCTTCGAGAGCCGCGTCTGGAGCGGGGAGAAGTTCGTGGACGTGCGGAA
CGTGGCTGTATACCAGCCCCGGAAGAACGCCTGGCTGCCTCTACAGAAGA
ACACGGTGAGGAAGGAAACAGAGGTCTGGCAAGAGAGCACAGAGTTGATG
GATGTGTGGCTCCTTCTACAGAAGAACACGGTGACGAAGAACCAGAAAAC
AGAAAAAAGACACGCGCCGTATCACAGAATTGATGAATGTGTGGCTCCTT
CTACAGAAGAGCAAGGCGGTGAGGAAGAAAACAGAAATCATATGAGAGAC
ATGTGCCGTGAGACAATATTGAACACCTGGTTCCTTCTACAGAATCCTTG
GAAGTAAACAGGATACAGAAAATTGACGGACAAGTGCAGTGGCACAGAGT
TGATGAACGCCTGGCTCTCTCAACAGAAGAACAGGGTGAAAAAGGCGGGG
AAATGACATGCGCCGTAACACAGCATTGAGGAGCCCCTCGCTTTGTCTAC
AGAAGAACACGGTGAGGAAATGAACACAGAATTGCCTTTACATGTGCCGT
AGCACATAATTATTGAACGCCTGGCTCTCTCTTCAGAAAGAACACTGCCG
CGGGAAAACAGAAACCAACGGAGGATTGACATGTGCTGCCGCACAGACTT
GAACGCTTCGCTCGCTCTACAGAACACAGTGACGAAAACAGTAGACAGAA
AAAGTGACATTTGCAGTACTGCTGTGGAGGCGACCGATCGAAAGGCTGTT
CACGTCCGTCCCAAGTTGCTACGATTGAGGCCGATTCTCTTTTTCCACAC
TTAAGCGTTGTGTCTATTTTTTTGTCACATTGGCGACGATCTATAGCCGC
CGAATTTTGCACAGAGAAAGGAGGGAGAAAATCTTCCTCGACAGCCGTTG
GGCAACTGTGATGGCCATCGTTCAAGGTCATCCCCACAGTCCATTTCGCG
TTTTGAGTTCAACAACGAGCACAACAGATTTGGACCATTTTTGGAGAGAT
TGCAGTCCGGCGAAAGGTGTATCCTACGTCCATGTAATCACGTTGCTTAC
TTACTGCTCGAATCAAACAGGCATCCTACAGCCACATGATTCGGTTTGTC
AAGGCACCTCACGCGCAAAACAAGCGATCATTTTGTTTTTTGCGGTAATA
CTGCAAGCACCCCAACAGAAAATCCGACGTGGATCCGGGAGAGAAATAAC
ACCTTCTGTTGCTGTGGTTAACGGCTATAGTGTAGCCGTATCCCGAACCA
GAAGTTGTATTTTGAGTGGAGTGTCGAGTCAAGCATACTAGGCGAAAGGA
CGTGAGTATGTCGTGAGGCCGGGGGGTACACATACCATGTTGTGCTGAAC
TGTTGAACAAGGCGCAGAAGATTAACAAATATGAGTGCCGCACACGAGAC
TGACTCACTGACTGCGCACGACCGATCGACGCTAAATAACGTCTCTCTTT
CACGACGAGTTCCTTCCTTTGAATATCCCTTTTTTTGTTTTTACTCGTAC
TCTGAAACCACCGGGTTTCAATCTCGTCCTTTCTCGTGCGGCGTTTCTTT
TTTGGGGGGGTCAGGGCGGCGGCCTCGGGTGCAACTGGGCAGAGGCTCGC
GTGATGAGCCTGGCGTGGAACGACGACGACCAAGTGTTGTACATCGGAGG
TGAGACAGAGACAAAGACAGAGACAGAGACAGAGAGAGGAAAACTATGAC
AGTACGATACAGTTGTAGTACAGCGGTAGCAGCGATCACGGCGGGGTCAC
CGCCATCGGGTGTGGTTTGATATTTTCACTTTAACACCCCTTAATATCTC
TGACTGTGTTCGTCCCCATCTTTTGTGGCGCTAGTCTAGTCTAGTGTACA
CGCCCTCCGGTGTACATTTCTGACGAATCAGCCGGGGTCATACCGAAAGA
AGGTCGCACAGAAGCATTATTTGTCGGAATATTGTTTTACCTTCACGCGG
GTTAATGTTGTTCCTTCACGCGGACGCATGAAAAATGGGGCGTTTTCAAA
GAATAAAAATAATACTCGTGTGTGGTTCTCTCTCTATATATTACCCTGTC
CTACTTTTTTGCTCTCTCGGGGTGTTCTGTTGGCGTACGTTCAATGGGTA
CCTTCTTTTTGCTTCTCCGAATTGGCGAAAAAACATAAGTGCACACACCC
TCCTTTTTTTATTGAACTGCTTTTTATCTCTCGTTTTTCACTCCCATGAG
CCTCCTCTCCCCTTTTTCTGCAGAATGCCTCCTCGATATGCTTGCTTTCT
TCATCGAACCCCTTCGTGTGTTTGTTGGTTTGTTTTGTTTCTCCGTTTGT
AATTGGGTAGGCAAGTTCAACCTCGTCGATAGCGAGTACATCCAGCCAGG
CCTAGCCATCTGGAGCAACGACACCGGCATCGCAGCTTTTCCAGGTACGA
TACCATGGGAAAAAGCTAGGATGTCCCCGGCAACGATTTTGAATACGGTA
ACGAACTGGGAGATTAACTGCAATGATGCGGTCACTTGCTAGCGGTAATA
TTATTACCGTAGAAAACCTTGGGAATAACGATGCGATCTTACTCTCATGT
CAGCCGGTAAGGCTATTTAGCATTCGATACGATACCTAAGGCCAGCAAGT
TGCAATTGTTCGGATCTAGAGTTGCGTCGCGAAAAGAGGTCGTAGTTGAG
GTACACGCAGCCTGGAGGCATTGATCCATTGATCCACCCACCGCTGTTGA
GACGGAGCGGGAATTCAAATCATGCGTGACGCATCCATCGTGTGGTTCCG
CACCCTGCTCTCATTCCTTTTTTTCGCAGGCGGCGGGGTAAGCTTCGACA
CGCCATGGTGGGGGGACTCGTCTTGGGTGTTCGACGGAGTGGTGACCTCC
CTCACTTACGACGCAGCCACCCGCAGCCTGTACGTCGCCGGTGCCTTCGA
TAGGGTCAACGGGGAGGCCCCCTGCCAAAGCATCGCCGTGAGTGCGGAGG
AGAGAGATTGTGCGGAACACAGAGAAGTGAACAGTCTAGGTTTGATGTGT
AAGAAGAGAACACAGCACAGCAGTAGAACTGAAGAAATCGACGCTGAGAA
TGAAGGCTGGCGGAGGAGCCTTAGTCTATGACAAGGGTTCCGCACTAAAT
ACCCCGAGATGTATGCTAGTAGTCGACTATTGCTCGACATTTGCCCCACG
TAAAACAGCTCAGGCTCGACCTGATTTTACGGTGCCTCATAGTTCTGTCT
GTTACTGTACAGGCCTGTTGTCTTGTTTCAATGAACACGTCGTTCGTACT
TTTCAGAATCCTTTGTCCGCCGTCTTTTTGTCGTGCACATTGTGTTTTGT
AGTTTTGTGGTGTTTTATTTTTTTTGTCGTATTCTTGGCTGGCGAGACAA
ATGTGAAGAAATAACAAGGAGCATCTACGATACTAGCCAGTGCGTACCGT
AAGGAGCGCCCATTCCACTACCACAAAAAGTAGCTCTCGGTCTCTGCAAA
TTATTCCCGTTGCTGCAACCCCACCGTTTCTACCTTAACCCTTGCGCCTA
CGAAATGAATCCCTTCGCCTTAACCACCATCACGCCCGTTTTGCCGGTAA
ATATGATGCAGGTGTGGAAGATGGACGAGGGGTCATGGGCCTGCCTCCAC
GAGACTAGCCACGGCTTCTCCGTCGTCACCTCCCTCCTCTATACCGGCAG
CATGCTCTACGTCGCCGGGGTGCCCGACGAGGACTCTTCGTGGGCAGAGA
CGTGGAGAGCCGGCTACGGCTACGCCGTCGAGAGGGGTAGCGACAGCGGT
AGCGGTAGCGATAGTAGCGCCGGTGGTGCGGTGAACGCGACGCGGTACAC
GATCGCTCGGATGAGCCAGAGCCCGACGCGCTTCCACGGGAAGTACGAGA
AGTGGGGGGAAGGGGATGGGGTGGACGATGCTGGGGAGGAGGACGTTAAG
GCGAAGGAGGGGTCATCTTCTAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6215:783..8106-

>mRNA_Ecto-sp13_S_contig6215.16937.1 ID=mRNA_Ecto-sp13_S_contig6215.16937.1|Name=mRNA_Ecto-sp13_S_contig6215.16937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1293bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6215:783..8106- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGTGTCCGAACAGGGTAATGTCGGCTCGAGCAGTGGCAGCGGCGG
TGGGGGGGGTGGTGACGGTAGTGGGGGGAAAAAGAAGGAGGATGCCGCGC
AGCCGAAAGCTCTGGAGGCGCTGGTAGTAGGGGGCAACTTCACGCTCAAC
GGGAAGAGCACCAACGTCGCCCAGTACGACCCTGTCAGCGAGAGCTGGTA
CTCTCGCTTCGAGCCTCAGCTGTACCTGTACGGAAAGGCCGCGGGAATGG
TGTCGGACCTGGCCGTGTGGCGTGCTGGAAGCCACGACGCCAACCCATAC
GACCTGCTCTACGTCGTCGGAGCGTTCGATACCATCTGTAAGGCCTGCCA
GCAGCAGTACTGCAGTGCGGGCGTGTGGACGGGGCAGGTGTTCGACAAGA
TCGGCGATGGCCTCTGCGGCGTGCCTCGGGCAACAGACTCTACCATGAAG
ATGTTCGCATCGGAGCTGACCCCGAAGGGGAACTTCTTCGTGGGGGGCAC
CTTCGAGAGCCGCGTCTGGAGCGGGGAGAAGTTCGTGGACGTGCGGAACG
TGGCTGTATACCAGCCCCGGAAGAACGCCTGGCTGCCTCTACAGAAGAAC
ACGGGCGGCGGCCTCGGGTGCAACTGGGCAGAGGCTCGCGTGATGAGCCT
GGCGTGGAACGACGACGACCAAGTGTTGTACATCGGAGGCAAGTTCAACC
TCGTCGATAGCGAGTACATCCAGCCAGGCCTAGCCATCTGGAGCAACGAC
ACCGGCATCGCAGCTTTTCCAGGCGGCGGGGTAAGCTTCGACACGCCATG
GTGGGGGGACTCGTCTTGGGTGTTCGACGGAGTGGTGACCTCCCTCACTT
ACGACGCAGCCACCCGCAGCCTGTACGTCGCCGGTGCCTTCGATAGGGTC
AACGGGGAGGCCCCCTGCCAAAGCATCGCCGTGTGGAAGATGGACGAGGG
GTCATGGGCCTGCCTCCACGAGACTAGCCACGGCTTCTCCGTCGTCACCT
CCCTCCTCTATACCGGCAGCATGCTCTACGTCGCCGGGGTGCCCGACGAG
GACTCTTCGTGGGCAGAGACGTGGAGAGCCGGCTACGGCTACGCCGTCGA
GAGGGGTAGCGACAGCGGTAGCGGTAGCGATAGTAGCGCCGGTGGTGCGG
TGAACGCGACGCGGTACACGATCGCTCGGATGAGCCAGAGCCCGACGCGC
TTCCACGGGAAGTACGAGAAGTGGGGGGAAGGGGATGGGGTGGACGATGC
TGGGGAGGAGGACGTTAAGGCGAAGGAGGGGTCATCTTCTAAG
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