mRNA_Ecto-sp13_S_contig6214.16935.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6214.16935.1
Unique NamemRNA_Ecto-sp13_S_contig6214.16935.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6214.16935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6214contigEcto-sp13_S_contig6214:2643..3205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size563
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463865.2266245-UTR-Ecto-sp13_S_contig6214:2642..28141681463865.2266245-UTR-Ecto-sp13_S_contig6214:2642..2814Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6214 2643..2814 +
1681463865.251432-UTR-Ecto-sp13_S_contig6214:3129..32051681463865.251432-UTR-Ecto-sp13_S_contig6214:3129..3205Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6214 3130..3205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463865.2381413-CDS-Ecto-sp13_S_contig6214:2814..31291681463865.2381413-CDS-Ecto-sp13_S_contig6214:2814..3129Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6214 2815..3129 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6214.16935.1prot_Ecto-sp13_S_contig6214.16935.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6214 2815..3129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6214.16935.1

>prot_Ecto-sp13_S_contig6214.16935.1 ID=prot_Ecto-sp13_S_contig6214.16935.1|Name=mRNA_Ecto-sp13_S_contig6214.16935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MMPPYTPLDNSALYHSSSATSHQRSGIELNLTLPQERVVPQTRLVRARTS
TKHGRDGIRHAHNGKQASKECTWTRNMFSQNAKLMDQSLGGAVVAGVALT
LTNN*
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mRNA from alignment at Ecto-sp13_S_contig6214:2643..3205+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6214.16935.1 ID=mRNA_Ecto-sp13_S_contig6214.16935.1|Name=mRNA_Ecto-sp13_S_contig6214.16935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=563bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6214:2643..3205+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGCGGTCGATCCCTCTCCAGCGCTCTCTCCCTATTCCGCATTCCAACA
ACGCGGCGCTGCCGCGTTCTCGCCCAGTTCGCGGTCGCTAGGCCGTGCGT
TTGGTTGGCGAGCGTAACAAGACCTCCAGCACAACACACCAGGTCTTGTC
AGCGCACAAGAGATCAAGCCAGATGATGCCTCCTTACACCCCATTGGACA
ACAGCGCATTGTACCACAGCAGCAGCGCCACATCACACCAAAGGTCAGGG
ATAGAGCTGAACCTTACCCTACCTCAAGAACGCGTGGTGCCGCAGACACG
GCTTGTGCGCGCTCGAACAAGCACGAAGCATGGACGAGACGGTATTCGGC
ATGCACACAACGGCAAACAAGCCTCGAAGGAGTGCACCTGGACCAGAAAC
ATGTTCTCGCAAAATGCAAAGCTCATGGATCAGAGCCTGGGTGGTGCTGT
TGTGGCAGGTGTAGCATTAACCCTGACCAACAACTGAATTCCTCGCCCTG
CCCGCGACCCAATACTACCACCTGTAGCGAAGCTCGTCCGCGTTGGCTTG
GGCTTCACGGTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6214:2643..3205+

>mRNA_Ecto-sp13_S_contig6214.16935.1 ID=mRNA_Ecto-sp13_S_contig6214.16935.1|Name=mRNA_Ecto-sp13_S_contig6214.16935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6214:2643..3205+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCCTCCTTACACCCCATTGGACAACAGCGCATTGTACCACAGCAG
CAGCGCCACATCACACCAAAGGTCAGGGATAGAGCTGAACCTTACCCTAC
CTCAAGAACGCGTGGTGCCGCAGACACGGCTTGTGCGCGCTCGAACAAGC
ACGAAGCATGGACGAGACGGTATTCGGCATGCACACAACGGCAAACAAGC
CTCGAAGGAGTGCACCTGGACCAGAAACATGTTCTCGCAAAATGCAAAGC
TCATGGATCAGAGCCTGGGTGGTGCTGTTGTGGCAGGTGTAGCATTAACC
CTGACCAACAACTGA
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