mRNA_Ecto-sp13_S_contig6214.16936.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6214.16936.1
Unique NamemRNA_Ecto-sp13_S_contig6214.16936.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6214.16936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6214contigEcto-sp13_S_contig6214:6591..7482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size276
Hectar predicted targeting categoryother localisation
Exons2
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463865.1755066-CDS-Ecto-sp13_S_contig6214:6590..66591681463865.1755066-CDS-Ecto-sp13_S_contig6214:6590..6659Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6214 6591..6659 +
1681463865.1974223-CDS-Ecto-sp13_S_contig6214:7277..74811681463865.1974223-CDS-Ecto-sp13_S_contig6214:7277..7481Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6214 7278..7481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6214.16936.1prot_Ecto-sp13_S_contig6214.16936.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6214 6591..7481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6214.16936.1

>prot_Ecto-sp13_S_contig6214.16936.1 ID=prot_Ecto-sp13_S_contig6214.16936.1|Name=mRNA_Ecto-sp13_S_contig6214.16936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
PRDLSQISARPLPAVNELEILPKVRDHPRGVSGKPTPPLLQPPPRKPIDG
VQLLHPLRQNVDNPLGGRRVHRRRGPSGLLAANRLRLFVLP
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mRNA from alignment at Ecto-sp13_S_contig6214:6591..7482+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6214.16936.1 ID=mRNA_Ecto-sp13_S_contig6214.16936.1|Name=mRNA_Ecto-sp13_S_contig6214.16936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=892bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6214:6591..7482+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCGGGACCTTAGCCAGATCTCTGCTAGGCCTCTCCCAGCTGTGAATGA
ACTCGAGATTCTTCCCAAGGTACGAGCTGACTTGGTATGGAGCTGTCGTG
ACGACATTCTTAGACTCGACATTTCGAGTTCCGAGGCCCCCGAACACGCC
GAAGTCGGGCCAGTCGGTCGTGCAGCGTGCAGTGAGCATCAACACACTTT
TGGCGAAGCGTAGCAGCAGCTCGCCGACCAGCTTCTGCTGCCGTGACTTT
TGGTATGCAATTGCATGGCAATGCCTATGTTATTTATGTTTGTCGCGGCC
AAAGGTTCTGGTTGTGCAGCAGTCAGCAGCAGTGGAGGTAGCAGTACGAG
GAAGCACGCAAGCGATGCGCGCGCTGTTTCACCACAGCATCGGTGCCGTG
GACTGTTCATGTGACCGTCCCCTGGTCAAGCCAGCCATCTTCCTAAACTT
CGCAACCCTTCCAATGCACCATAGTCCTGCTGACGGTCTCTGTTCGCCGT
CTGATCCGCCGCCATCCACCTGACTGCCTCCTCACGGCAGTAAATAGTGT
TGTTGCTCACGTACCTCCACGCCGCAGTACAGCAGTGTATCCTACCGCAT
TGTTGTACTAGAACAAGGTGCACCCGCAATGCCCGGCCAACGTGCCAACA
AACGCCGTTGCCGCACGCCCCCCCCCCGATAAGAAAGGTGCGGGATCACC
CTCGCGGTGTTTCTGGGAAGCCAACGCCACCTCTCCTACAACCTCCGCCC
CGCAAACCTATTGATGGTGTGCAGCTTCTTCACCCCCTTCGCCAGAACGT
CGACAACCCCCTCGGTGGGCGGCGTGTTCACCGCCGCCGTGGCCCGAGTG
GCCTTCTCGCTGCCAACCGCCTGCGCCTCTTCGTCTTACCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6214:6591..7482+

>mRNA_Ecto-sp13_S_contig6214.16936.1 ID=mRNA_Ecto-sp13_S_contig6214.16936.1|Name=mRNA_Ecto-sp13_S_contig6214.16936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6214:6591..7482+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCGGGACCTTAGCCAGATCTCTGCTAGGCCTCTCCCAGCTGTGAATGA
ACTCGAGATTCTTCCCAAGGTGCGGGATCACCCTCGCGGTGTTTCTGGGA
AGCCAACGCCACCTCTCCTACAACCTCCGCCCCGCAAACCTATTGATGGT
GTGCAGCTTCTTCACCCCCTTCGCCAGAACGTCGACAACCCCCTCGGTGG
GCGGCGTGTTCACCGCCGCCGTGGCCCGAGTGGCCTTCTCGCTGCCAACC
GCCTGCGCCTCTTCGTCTTACCA
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