mRNA_Ecto-sp13_S_contig6212.16933.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6212.16933.1
Unique NamemRNA_Ecto-sp13_S_contig6212.16933.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Match: D7G250_ECTSI (AAA_23 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G250_ECTSI)

HSP 1 Score: 491 bits (1265), Expect = 3.320e-172
Identity = 266/271 (98.15%), Postives = 269/271 (99.26%), Query Frame = 1
Query:    1 VGVVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTETYSNLRKEIEAIDARTAELSESLEKLRAVADEVRMLEGRKQSLLLACRDLDVRMAEKRENIGDGEMSSESDETLSKNLQEFDAKLAAVADEIQFYADEADRCRERAEAAKKEKDRLQGEQGSVQAQLAQQ 813
            VGVVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTETYS LR+EIEAIDARTAELSESLEKLRAVADEVRMLEGRKQSLLLACRDLDVRMAEKRENIGDGEMSSESDETLSKNLQEFDA+LAAVADEIQFYADEADRCRERAEAAKK+KDRLQGEQGSVQAQL QQ
Sbjct:   92 VGVVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTETYSTLRQEIEAIDARTAELSESLEKLRAVADEVRMLEGRKQSLLLACRDLDVRMAEKRENIGDGEMSSESDETLSKNLQEFDARLAAVADEIQFYADEADRCRERAEAAKKKKDRLQGEQGSVQAQLTQQ 362          
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Match: A0A6H5L8V1_9PHAE (AAA_23 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8V1_9PHAE)

HSP 1 Score: 345 bits (884), Expect = 1.340e-111
Identity = 193/223 (86.55%), Postives = 196/223 (87.89%), Query Frame = 1
Query:  145 IPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTETYSNLRKEIEAIDARTAELSESLEKLRAVADEVRMLEGRKQSLLLACRDLDVRMAEKRENIGDGEMSSESDETLSKNLQEFDAKLAAVADEIQFYADEADRCRERAEAAKKEKDRLQGEQGSVQAQLAQQ 813
            IPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKAL+NIKKTKQEYAS VKELKVDLAALQERLRAANDLKEEMDASTETYSNLR                    RAVADEVRMLE RKQSLLLACRDLDVRM EKR+NIGDGEMSSESDETL KNLQEFD KLA VADEIQFYADEADRCRERAEAAKK+KDRLQGEQGSVQAQL QQ
Sbjct:   90 IPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALENIKKTKQEYASAVKELKVDLAALQERLRAANDLKEEMDASTETYSNLRXXXXXXXXXXXXXXXXXXXXRAVADEVRMLEERKQSLLLACRDLDVRMTEKRDNIGDGEMSSESDETLRKNLQEFDDKLAVVADEIQFYADEADRCRERAEAAKKKKDRLQGEQGSVQAQLTQQ 312          
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Match: A0A8J2S5K6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S5K6_9STRA)

HSP 1 Score: 176 bits (445), Expect = 3.090e-46
Identity = 112/268 (41.79%), Postives = 158/268 (58.96%), Query Frame = 1
Query:    7 VVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTETYSNLRKEIEAIDARTAELSESLEKLRAVADEVRMLEGRKQSLLLACR----DLDVRMAEKRENIGDGEMSSESDETLSKNLQEFDAKLAAVADEIQFYADEADRCRERAEAAKKEKDRLQGEQGSVQA 798
            VV+RS QLTQK+ T  FK LDGVIR     G   S  HKC E+DK +P+ +GVS+A+LE+V+FCHQED+SWPLQEGAV+KK+FDDIF+SARYTKALD + K K+  AS  K++  DL  L     AA D  +   ++ +   +    I+A D +   L +  EK R + D++R L+ ++Q L   CR     L+  +    E + D  +  E D+ L+        +  +  D I+    E  + RE AE A+KE  R+ GE+GS +A
Sbjct:   94 VVVRSMQLTQKKTTATFKQLDGVIRATKPDGSKTSYTHKCGELDKTVPIMIGVSRAVLESVIFCHQEDSSWPLQEGAVLKKRFDDIFDSARYTKALDVLNKQKKGLASKAKDISGDLKGLHADKVAAQDHLKRKASAEKAIQSADASIKACDDKQGSLRD--EKSR-INDKLRKLQAQEQGLQ-ECRAEVDGLERSLKYLEERLADSALMDEDDDVLAATAARLQEEEDSQFDIIRKLEREEGKHRELAEQARKEASRVDGEKGSAEA 357          
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Match: A0A1V9ZB00_9STRA (DNA repair protein RAD50 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZB00_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.040e-45
Identity = 106/248 (42.74%), Postives = 155/248 (62.50%), Query Frame = 1
Query:    7 VVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMD-------ASTETYSNLRKEIEAIDARTAELSESLEKLRAVADEVRMLE----GRKQSLLLACRDLDVRMAEKRENIGDGEMSSESDETLS-KNLQEFDAKLAAVADEIQFYAD 714
            VV R+F+L Q + + +F+A+DGV+R  N+ G+ VSIN KC+E+DKHIP  LGVSKA+LE+V+FCHQE+++WPLQEGAV+KK+FDDIFESARYTKAL+ IKK K+E  +  K++K DL  L E+++   D++E+++       A    Y  +  EI  + AR  E    L  +R VA  VR LE     +   +  A R L   M E   ++ +   + +S  T+  K + E +A+ AA+   +Q   D
Sbjct:   94 VVQRTFRLQQMKASCKFQAMDGVVRMINDHGEKVSINQKCSELDKHIPDLLGVSKAVLESVIFCHQEESNWPLQEGAVLKKRFDDIFESARYTKALEAIKKLKKERLAMAKDMKRDLDVLGEQVKRVRDMEEQLETREAKLLALKADYETMSGEIGQLAARVTETDAELAHVRDVAAHVRELERTAAAKSDEMARAFRSLGPEMTESTASLEEILANYDSILTIKHKEVLEIEAQEAALTAAVQAADD 341          
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Match: A0A662WHK9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WHK9_9STRA)

HSP 1 Score: 172 bits (437), Expect = 3.560e-45
Identity = 101/227 (44.49%), Postives = 150/227 (66.08%), Query Frame = 1
Query:    7 VVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTETYSNLRKEIEAIDARTAELSESLEKLRAVADEVRMLEGRKQSLLLACRDLDVRMAEKRENIGDG-----EMSSESDETLSKNLQEFDA 672
            VV R++Q+ Q + ++QFKALDGVIR  NE G+ VS+ HKC E+D+HIP  +GVSKAIL++V+FCHQE+A+WPLQEGAV+KK+FDDIFESARYTKAL+ I+K K+      K+ K DLA L   ++ A +++++++A+ +T   + +E E      A+  E+LE++  +  E+   EG   +L    +  DV  A+K   I +      +M S++DE L   L  +DA
Sbjct:   94 VVQRTYQVRQLKASVQFKALDGVIRVVNELGEKVSMGHKCGELDRHIPDMMGVSKAILDSVIFCHQEEANWPLQEGAVLKKRFDDIFESARYTKALEAIRKLKKARNDDTKDYKRDLAVLTVNMKTAENIRDKIEAAEDTLRAVSEEREKAGDAVAQAQETLEEMERLQSEI---EGHHNAL--ERQQCDV--AQKEATIKNAYAKIEQMMSDTDEELEALLNNYDA 313          
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Match: A0A1E7F3C8_9STRA (AAA_23 domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F3C8_9STRA)

HSP 1 Score: 160 bits (404), Expect = 4.160e-45
Identity = 75/114 (65.79%), Postives = 94/114 (82.46%), Query Frame = 1
Query:    7 VVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELK 348
            V++RS ++TQK+ T+ FK LDG +RT N +G+ ++++HKCTE+D+ IPL LGVSKAILENVVFCHQEDASWPLQEGAV+KKKFDDIF+S RYTKALD   K K+EY    K+ K
Sbjct:   93 VIVRSMEVTQKKTTMTFKQLDGNLRTVNNTGERIAMSHKCTELDRQIPLMLGVSKAILENVVFCHQEDASWPLQEGAVLKKKFDDIFDSTRYTKALDVFSKAKKEYVLKAKDHK 206          
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Match: A0A8K1CBI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBI4_PYTOL)

HSP 1 Score: 171 bits (434), Expect = 9.010e-45
Identity = 84/172 (48.84%), Postives = 124/172 (72.09%), Query Frame = 1
Query:    7 VVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTETYSNLRKEIEAIDARTAELSESLEKLRAVADEV 522
            VV R+FQL Q +   Q+KALDGV+R  NE G+ VS++HKC E+D+HIP  LGVSKAILE+V+FCHQED++WPLQEGAV+KK+FDDIFESARYTKAL+ I+K ++      KE K +L  L  +L+ A +++E+++ + E  S ++ +   +D        +L +++ ++DE+
Sbjct:   94 VVQRTFQLVQTKSKTQYKALDGVVRVVNELGEKVSMSHKCAELDRHIPEMLGVSKAILESVIFCHQEDSNWPLQEGAVLKKRFDDIFESARYTKALEAIRKLRKARNDDAKEFKRELDVLNVKLKMAEEIREKIEVAEEKLSRMKDKAAQLDDSVDNAENTLREMKQLSDEI 265          
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Match: A0A2P4XQ47_9STRA (DNA repair protein RAD50 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XQ47_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.160e-44
Identity = 80/139 (57.55%), Postives = 109/139 (78.42%), Query Frame = 1
Query:    7 VVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTE 423
            VV R++Q+ Q +K LQFKALDGVIR  NE G+ VS+NHKC E+D+HIP  LGVSKAILE+V+FCHQED++WPL+EGA +KK+FD+IFESARYTKAL+ I+K K+      K+ K DL  L   ++AA D++++++ + E
Sbjct:   94 VVNRTYQVRQTKKALQFKALDGVIRVVNELGEKVSLNHKCGELDQHIPDMLGVSKAILESVIFCHQEDSNWPLREGAELKKRFDNIFESARYTKALEAIRKLKKARLDNAKDYKRDLDVLTVNMKAAGDIRDKIELAQE 232          
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Match: A0A7S4KCM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KCM0_9STRA)

HSP 1 Score: 163 bits (413), Expect = 3.200e-44
Identity = 93/227 (40.97%), Postives = 140/227 (61.67%), Query Frame = 1
Query:    7 VVIRSFQLTQKRKTLQFKALDGVIRTKN-ESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTETYSNLRKEIEAIDARTAELSESLEKLRAVADEVRMLEGRKQSLLLACRDLDVRMAEKRENIGDGEMSSESDETLSKNLQEFDAKLAA 684
            VV+RS +LTQK+ T+QFKALDG++RT +  +G+ V+++HKC E+D+ IP  +GVSK ILE+VVF HQED+SWPLQ+ A +K+KFDDIF+S RY KAL+ I+K++ EYA+  KE K +L+ L     AA   ++E D + +  + + +++ A D      SE   K   V +E++ L  R   L       +   A KR  + +     ++ E L   L  FD  ++A
Sbjct:   95 VVVRSMELTQKKTTMQFKALDGILRTNDPNTGERVALSHKCGELDRQIPTLMGVSKPILEHVVFTHQEDSSWPLQDAASLKRKFDDIFDSTRYAKALEAIRKSRLEYANVAKEHKSELSGLASHKHAAEGFRQETDMARDELAEIDEKMAACDESIERESEKRSKYERVLNEMQELSDRAGDLRNETERDETIAASKRSMLEEDWTDEQTSERLEAMLSGFDDVISA 321          
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Match: M4BIK8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BIK8_HYAAE)

HSP 1 Score: 169 bits (428), Expect = 5.580e-44
Identity = 102/225 (45.33%), Postives = 145/225 (64.44%), Query Frame = 1
Query:    7 VVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTETYSNLRKEIEAIDARTAELSESLEKLRAVADEVR----MLEGRKQSLLLACRDLDVRMAEKRENIGDGEMSSESDETLSKNLQEFD 669
            VV R+FQ+ Q +K+LQFKALDGVIR  NE G+ VS++HKC E+D+HIP  LGVSKAI+ENV+FCHQEDA+WPL+EGA +KK+FD IFESARYTKAL+ I+K K+      K+ K DL  L   ++ A  ++  +DA  E     R+E  A     A   + LE+L+ +  EV+     L+ R++ ++L  + +  R   K ENI      S++D+ L   L +++
Sbjct:    2 VVQRTFQVRQTQKSLQFKALDGVIRVVNEVGEKVSLSHKCGELDQHIPDMLGVSKAIIENVIFCHQEDANWPLREGAELKKRFDQIFESARYTKALEAIRKLKKARLDQTKDYKRDLDVLTVNMKTAETIRVSLDARQEQLQQARREEGAGREEIASAGKMLEELQVLQTEVKRVHEQLKRREEDVVLKEQSV-WRAYSKIENI-----MSDTDDELQGVLNDYE 220          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6212.16933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G250_ECTSI3.320e-17298.15AAA_23 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5L8V1_9PHAE1.340e-11186.55AAA_23 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A8J2S5K6_9STRA3.090e-4641.79Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1V9ZB00_9STRA1.040e-4542.74DNA repair protein RAD50 n=1 Tax=Achlya hypogyna T... [more]
A0A662WHK9_9STRA3.560e-4544.49Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A1E7F3C8_9STRA4.160e-4565.79AAA_23 domain-containing protein (Fragment) n=1 Ta... [more]
A0A8K1CBI4_PYTOL9.010e-4548.84Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P4XQ47_9STRA1.160e-4457.55DNA repair protein RAD50 (Fragment) n=1 Tax=Phytop... [more]
A0A7S4KCM0_9STRA3.200e-4440.97Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
M4BIK8_HYAAE5.580e-4445.33Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6212contigEcto-sp13_S_contig6212:5155..8370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score495.4
Seed ortholog evalue1.7e-137
Seed eggNOG ortholog2880.D7G250
Preferred nameRAD50
Model size813
KEGG koko:K10866
KEGG Pathwayko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG ModuleM00291,M00292,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000019,GO:0000075,GO:0000077,GO:0000166,GO:0000228,GO:0000278,GO:0000280,GO:0000706,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000727,GO:0000729,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003691,GO:0003697,GO:0003824,GO:0004003,GO:0004017,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006278,GO:0006281,GO:0006284,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007346,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009165,GO:0009892,GO:0009987,GO:0010520,GO:0010564,GO:0010605,GO:0010705,GO:0010833,GO:0016043,GO:0016233,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016776,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019205,GO:0019219,GO:0019222,GO:0019438,GO:0019637,GO:0022402,GO:0022414,GO:0023052,GO:0030554,GO:0030674,GO:0030870,GO:0031297,GO:0031323,GO:0031324,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032071,GO:0032074,GO:0032076,GO:0032078,GO:0032200,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035639,GO:0035753,GO:0035825,GO:0035861,GO:0036094,GO:0040020,GO:0042138,GO:0042162,GO:0042592,GO:0042623,GO:0042769,GO:0042770,GO:0043047,GO:0043086,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043570,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044786,GO:0045005,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0046940,GO:0048285,GO:0048519,GO:0048523,GO:0050145,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051336,GO:0051346,GO:0051445,GO:0051606,GO:0051716,GO:0051726,GO:0051783,GO:0051880,GO:0055086,GO:0060090,GO:0060249,GO:0060255,GO:0060631,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070192,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0072395,GO:0072401,GO:0072422,GO:0080090,GO:0090304,GO:0090305,GO:0090407,GO:0090734,GO:0097159,GO:0097367,GO:0097551,GO:0097552,GO:0098687,GO:0098847,GO:0110025,GO:0140013,GO:0140097,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902298,GO:1902969,GO:1903046,GO:1903047,GO:1903211,GO:1990426,GO:1990505,GO:1990898,GO:1990918,GO:2000241
Exons6
EggNOG free text desc.G-quadruplex DNA binding
EggNOG OGsCOG0419@1,KOG0962@2759
Cds size813
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6212.16933.1prot_Ecto-sp13_S_contig6212.16933.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6212 5155..8370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463865.0254521-CDS-Ecto-sp13_S_contig6212:5154..52341681463865.0254521-CDS-Ecto-sp13_S_contig6212:5154..5234Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6212 5155..5234 +
1681463865.0424423-CDS-Ecto-sp13_S_contig6212:5605..56691681463865.0424423-CDS-Ecto-sp13_S_contig6212:5605..5669Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6212 5606..5669 +
1681463865.05352-CDS-Ecto-sp13_S_contig6212:6670..68651681463865.05352-CDS-Ecto-sp13_S_contig6212:6670..6865Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6212 6671..6865 +
1681463865.0649676-CDS-Ecto-sp13_S_contig6212:7369..75491681463865.0649676-CDS-Ecto-sp13_S_contig6212:7369..7549Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6212 7370..7549 +
1681463865.0776005-CDS-Ecto-sp13_S_contig6212:7732..79001681463865.0776005-CDS-Ecto-sp13_S_contig6212:7732..7900Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6212 7733..7900 +
1681463865.0914087-CDS-Ecto-sp13_S_contig6212:8244..83701681463865.0914087-CDS-Ecto-sp13_S_contig6212:8244..8370Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6212 8245..8370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6212.16933.1

>prot_Ecto-sp13_S_contig6212.16933.1 ID=prot_Ecto-sp13_S_contig6212.16933.1|Name=mRNA_Ecto-sp13_S_contig6212.16933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=271bp
VGVVIRSFQLTQKRKTLQFKALDGVIRTKNESGQSVSINHKCTEMDKHIP
LRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDN
IKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTETYSNLRKEI
EAIDARTAELSESLEKLRAVADEVRMLEGRKQSLLLACRDLDVRMAEKRE
NIGDGEMSSESDETLSKNLQEFDAKLAAVADEIQFYADEADRCRERAEAA
KKEKDRLQGEQGSVQAQLAQQ
back to top

mRNA from alignment at Ecto-sp13_S_contig6212:5155..8370+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6212.16933.1 ID=mRNA_Ecto-sp13_S_contig6212.16933.1|Name=mRNA_Ecto-sp13_S_contig6212.16933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6212:5155..8370+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGGTGTGGTGATCCGATCCTTCCAGCTAACCCAGAAGCGGAAGACCCT CCAGTTCAAGGCGCTAGATGGCGTCATCAGGTAACGTCAGTGGTCTAGGG CACCGTGGTTGACGCGAGGTCCCCGCCCGTGTGGAGTTTGATTTTTTTCC TTCGGATTGCTCCGCAACTAGCAGAGGGGTAGATCACCTCCATGGGTCAG AACGCGTGTGGAAGGTTTCGTCGCCAAGCCCTTTCTATACCGTTTCGAGT TGTGTCCCGACCACTGGTCTGCGTTTGGTGACCGACTTTCCTATGGGAAG GCCCCCCACTGCTGTGTTGATACCGTCGTACCCCCGTGTGGCTCTGCAAC TAGTACGTTGGAACTCATGCGAAGCGTGAACTGCAGAGTCGCGGGTGAGC TGATTGTTGGTGCGCGCATGTGCACGTTCGTTTGTGTATGATGTTTCACA GGACGAAGAACGAGTCCGGCCAAAGCGTGAGCATCAACCACAAGTGCACG GAGATGGACAAGCACGTGAGTGTGTGTGTGTGTGTGTATTATTATTATTA GCGTCGACCGCGCTAACCGGCTGACCAATGAAAAGAAGGCAGTCTCAATG CGGTTGAAAACACAAAACATATTTCAATACCATTAACTGGGACATCGTGA TGGGGGAGGCAAAGCTATTCTCCGGATCAAAGACAGAGACGGTAGCAAAA GAAGAAAACTGCACGTGTCGATGAAGGTGCTATGCGTGTGTGCGTGTTCT TTCTTTTATTTTTTTGCCCCGCGGGGTTAGGTCAATGATGTTGTCACCGT CGTCGTCGCCTTCCTCGTGTCGTTCGAGGTAGGATCGTTGGTGATCTTGT CATTGTTTTTGTTTGCTGCGTGCCATGTGTTTGTAGAGCACGCATTCGAA GCGGATAGTGGTTGCTGTGACTTGCCGGAGCGGAAAAACAAAAGGGCCGG GCTTAAAAAGTTGGTGGATTTGGTGGTGGGGTTCACAAGCCTCGCTCACA GCCAGGCAGGCCACTGCAGTCAGGGGGTGAGTGTTTCTACGGTTAGTTTC AACCGCGGACGAGGATCAGACCAACGTGGACGCGTTCTGTTCATTGCACC CCAGGATGTTACCGGTCGAAACACACACTAAGATACCAATGTGTGAGTGC ACCCCGACCGATTTTATCCGCACTACAGTACATACTCGCAGCAGACCACT AGCAAATCATGTTCGTGTCACATGCTGCTGTGCCGTGCGTGTAACACTCC CGGCTACCTACGTGTGGCCTGTCTCGCTCTCTTTGGCGCTTCCTTTTGTT ATTTTCGTCGGGCTTTTTTTCATAAAACATGTGTACCCTCACAGAAAGAC TATCCTTTCGAAATAATACCACAGTCGGAAGGGGATGATGTGTTGAACTC TTGGCAGCGAGTGGGAGAAAAACAGACTGGATATCGGACTTACTTTCAAT TTACTTAAGCTCTCTTCAGTGTTATCTTTTTGTGAGTGTATCTAAGCTTT TTTTTTTTTTTGTCAGATCCCGCTGCGGCTGGGCGTGTCGAAGGCCATCT TGGAGAACGTCGTCTTCTGCCACCAGGAGGACGCCAGCTGGCCCCTGCAG GAGGGCGCGGTGGTCAAGAAGAAGTTCGACGACATCTTCGAGTCTGCCCG CTACACCAAGGCCCTGGACAACATCAAGAAGACGAAGCAGGAGTACGCCT CCACCGTCAAGGTGAGTTGATCATCGACCGGGTTCGTTTTGTTNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNATCCTTTTATCTTCCTTGCGATCGTCGTCTACCTCTCCTC GCCTCTGTGCTACAGGAGCTGAAGGTCGATCTCGCCGCACTCCAAGAGAG GCTGCGCGCGGCGAACGACCTCAAAGAAGAGATGGACGCTTCTACCGAGA CGTACAGCAACCTCCGCAAGGAGATCGAGGCGATCGACGCGCGCACCGCG GAGCTGTCCGAATCGCTCGAGAAGCTTCGCGCGGTGGCGGACGAGGTTCG TCTGTTTTCGCTTTTATACATTTAAATTTATTTTTATTTTTTTACCACAG TAAGAAGCGCGTGTATGTGCAGCAACAGTCCCAAGTCCGGAGAGAAAACC GCCCTCCCCGCGGAGGAAGGAGGGGTTTGTTTTCTGTTCTGAAATTGTCG TTTTGACGTATCGCTCTCCTCCATATAGGTGCGGATGCTGGAGGGACGCA AGCAGTCCCTGTTGCTGGCGTGCCGGGACCTGGACGTGCGCATGGCCGAG AAGCGAGAGAACATCGGCGACGGCGAGATGAGCTCCGAGTCGGACGAGAC GCTAAGCAAGAACCTTCAGGAGTTCGACGCTAAGCTCGCCGCTGTCGTGA GTTGTTTTTCGGACGAATCGACATGCTTTCATGCCTCCTTCTGTTTGTTG TTATTTCAAGAGCCTGTAGTAGGTTATTGGTGGCTGCTTTCCTGGCGTAT CGTGTTGCACACTCCCTCATCACTCGTCGATGAAGACCGTTTCGTTTTCG TGGTGTGCAGCTGTTGCTGTCGTTGCAGTCGTGGGGTACGTTTCTTCGTC CGTTTGCGAGGCCGGTGTGATCATTTTTTTGTTCGACAATCAGTCTTGAT CTGGTGACGGTGGCGCCGCTGTTGCTGCTGCTGCTGCTCTTGTTGTCGTT GCTGTTGCTGCGGTACATGAATCGTTTCTTGATGGAGCAGGCGGACGAGA TTCAGTTCTACGCGGACGAGGCGGACCGGTGCAGGGAGAGGGCTGAGGCC GCCAAGAAGGAGAAGGACCGGCTCCAGGGGGAGCAGGGCAGCGTCCAAGC GCAGCTCGCCCAGCAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6212:5155..8370+

>mRNA_Ecto-sp13_S_contig6212.16933.1 ID=mRNA_Ecto-sp13_S_contig6212.16933.1|Name=mRNA_Ecto-sp13_S_contig6212.16933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=813bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6212:5155..8370+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGGTGTGGTGATCCGATCCTTCCAGCTAACCCAGAAGCGGAAGACCCT
CCAGTTCAAGGCGCTAGATGGCGTCATCAGGACGAAGAACGAGTCCGGCC
AAAGCGTGAGCATCAACCACAAGTGCACGGAGATGGACAAGCACATCCCG
CTGCGGCTGGGCGTGTCGAAGGCCATCTTGGAGAACGTCGTCTTCTGCCA
CCAGGAGGACGCCAGCTGGCCCCTGCAGGAGGGCGCGGTGGTCAAGAAGA
AGTTCGACGACATCTTCGAGTCTGCCCGCTACACCAAGGCCCTGGACAAC
ATCAAGAAGACGAAGCAGGAGTACGCCTCCACCGTCAAGGAGCTGAAGGT
CGATCTCGCCGCACTCCAAGAGAGGCTGCGCGCGGCGAACGACCTCAAAG
AAGAGATGGACGCTTCTACCGAGACGTACAGCAACCTCCGCAAGGAGATC
GAGGCGATCGACGCGCGCACCGCGGAGCTGTCCGAATCGCTCGAGAAGCT
TCGCGCGGTGGCGGACGAGGTGCGGATGCTGGAGGGACGCAAGCAGTCCC
TGTTGCTGGCGTGCCGGGACCTGGACGTGCGCATGGCCGAGAAGCGAGAG
AACATCGGCGACGGCGAGATGAGCTCCGAGTCGGACGAGACGCTAAGCAA
GAACCTTCAGGAGTTCGACGCTAAGCTCGCCGCTGTCGCGGACGAGATTC
AGTTCTACGCGGACGAGGCGGACCGGTGCAGGGAGAGGGCTGAGGCCGCC
AAGAAGGAGAAGGACCGGCTCCAGGGGGAGCAGGGCAGCGTCCAAGCGCA
GCTCGCCCAGCAG
back to top