mRNA_Ecto-sp13_S_contig62059.16926.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62059.16926.1
Unique NamemRNA_Ecto-sp13_S_contig62059.16926.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig62059.16926.1 vs. uniprot
Match: D7FMZ6_ECTSI (NnrU domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMZ6_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 4.440e-45
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 QGEELVGARAWRVLFGVVSLPLAVTAVAYFINHRYDGVQLWNIKMVPGVHDACWITSFISFVFLYPSTFNLLEV 222
            +GEEL+GARAWRVLFGVVSLPLAVTAVAYFINHRYDGVQLWNIKMVPGVHDACWITSFISFVFLYPSTFNLLEV
Sbjct:  114 KGEELIGARAWRVLFGVVSLPLAVTAVAYFINHRYDGVQLWNIKMVPGVHDACWITSFISFVFLYPSTFNLLEV 187
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BLAST of mRNA_Ecto-sp13_S_contig62059.16926.1 vs. uniprot
Match: A0A835Z2B9_9STRA (NnrU protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2B9_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.410e-37
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1 
Query:    1 QGEELVGARAWRVLFGVVSLPLAVTAVAYFINHRYDGVQLWNIKMVPGVHDACWITSFISFVFLYPSTFNLLEV 222
            +GEE++GARAWRVLFGVVSLPLA++ + YFINHRYDGV LWN+K VPGVHD CWI+SFISF FLYPSTFNLLEV
Sbjct:  158 KGEEIIGARAWRVLFGVVSLPLALSCLVYFINHRYDGVALWNLKGVPGVHDFCWISSFISFFFLYPSTFNLLEV 231
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BLAST of mRNA_Ecto-sp13_S_contig62059.16926.1 vs. uniprot
Match: A0A176WHR7_MARPO (NnrU domain-containing protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176WHR7_MARPO)

HSP 1 Score: 126 bits (316), Expect = 1.080e-33
Identity = 56/73 (76.71%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:    4 GEELVGARAWRVLFGVVSLPLAVTAVAYFINHRYDGVQLWNIKMVPGVHDACWITSFISFVFLYPSTFNLLEV 222
            GE+L+G RA+RVLF  +SLPLAV+AV YFINHRYDGVQLW ++ VPGVH+ CWI SFISF+FLYPSTFNLLEV
Sbjct:  201 GEKLIGERAYRVLFAGISLPLAVSAVVYFINHRYDGVQLWQVRDVPGVHEFCWIMSFISFLFLYPSTFNLLEV 273
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BLAST of mRNA_Ecto-sp13_S_contig62059.16926.1 vs. uniprot
Match: A0A6F8P139_EUGGR (Zeta-carotene isomerase n=1 Tax=Euglena gracilis TaxID=3039 RepID=A0A6F8P139_EUGGR)

HSP 1 Score: 127 bits (319), Expect = 2.490e-33
Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:    1 QGEELVGARAWRVLFGVVSLPLAVTAVAYFINHRYDGVQLWNIKMVPGVHDACWITSFISFVFLYPSTFNLLEV 222
            QGEEL+GARA+RVLFG++SLPLA+ A+ YF+NHRYDGVQLW+ + VPGVH   WIT+FISF FLYPSTFNLLEV
Sbjct:  227 QGEELIGARAYRVLFGLISLPLALVAIVYFMNHRYDGVQLWSFRGVPGVHSFVWITTFISFFFLYPSTFNLLEV 300
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BLAST of mRNA_Ecto-sp13_S_contig62059.16926.1 vs. uniprot
Match: A0A2R6X2T9_MARPO (NnrU domain-containing protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X2T9_MARPO)

HSP 1 Score: 126 bits (316), Expect = 4.030e-33
Identity = 56/73 (76.71%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:    4 GEELVGARAWRVLFGVVSLPLAVTAVAYFINHRYDGVQLWNIKMVPGVHDACWITSFISFVFLYPSTFNLLEV 222
            GE+L+G RA+RVLF  +SLPLAV+AV YFINHRYDGVQLW ++ VPGVH+ CWI SFISF+FLYPSTFNLLEV
Sbjct:  192 GEKLIGERAYRVLFAGISLPLAVSAVVYFINHRYDGVQLWQVRDVPGVHEFCWIMSFISFLFLYPSTFNLLEV 264
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BLAST of mRNA_Ecto-sp13_S_contig62059.16926.1 vs. uniprot
Match: A0A7S3PUT8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PUT8_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.050e-32
Identity = 51/72 (70.83%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    7 EELVGARAWRVLFGVVSLPLAVTAVAYFINHRYDGVQLWNIKMVPGVHDACWITSFISFVFLYPSTFNLLEV 222
            EE+VGARAWRV+F  VSLPL+++ ++YF+NH ++GVQLWN   VPG+H ACWIT FISF+FLYPSTFNLLEV
Sbjct:   22 EEIVGARAWRVVFAFVSLPLSLSCISYFVNHCHEGVQLWNFTSVPGLHTACWITDFISFLFLYPSTFNLLEV 93
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BLAST of mRNA_Ecto-sp13_S_contig62059.16926.1 vs. uniprot
Match: A8JI65_CHLRE (Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JI65_CHLRE)

HSP 1 Score: 118 bits (295), Expect = 1.800e-32
Identity = 51/74 (68.92%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    1 QGEELVGARAWRVLFGVVSLPLAVTAVAYFINHRYDGVQLWNIKMVPGVHDACWITSFISFVFLYPSTFNLLEV 222
            +GEELVG RA+RV+F +VSLPLA+ A+ +FINHRYDGV LWN++ VPGVH+  W+ +FISF FLYPSTFN+LEV
Sbjct:   25 KGEELVGPRAYRVVFALVSLPLALLAIVFFINHRYDGVPLWNVRDVPGVHELVWVINFISFWFLYPSTFNILEV 98
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BLAST of mRNA_Ecto-sp13_S_contig62059.16926.1 vs. uniprot
Match: A0A3S3NGG2_9MAGN (15-cis-zeta-carotene isomerase n=2 Tax=Cinnamomum TaxID=13428 RepID=A0A3S3NGG2_9MAGN)

HSP 1 Score: 122 bits (307), Expect = 5.710e-32
Identity = 52/73 (71.23%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:    4 GEELVGARAWRVLFGVVSLPLAVTAVAYFINHRYDGVQLWNIKMVPGVHDACWITSFISFVFLYPSTFNLLEV 222
            GE+L+G RA+RVLF  +SLPLA+T + YFINHRYDG+QLW++K VPGVH+  WI++FISF+FLYPSTFNLLEV
Sbjct:  168 GEKLIGERAYRVLFAGISLPLALTTIVYFINHRYDGIQLWDVKSVPGVHELVWISNFISFLFLYPSTFNLLEV 240
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BLAST of mRNA_Ecto-sp13_S_contig62059.16926.1 vs. uniprot
Match: A0A5D3CYJ4_CUCME (15-cis-zeta-carotene isomerase n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CYJ4_CUCME)

HSP 1 Score: 120 bits (301), Expect = 5.870e-32
Identity = 54/74 (72.97%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    1 QGEELVGARAWRVLFGVVSLPLAVTAVAYFINHRYDGVQLWNIKMVPGVHDACWITSFISFVFLYPSTFNLLEV 222
            QGE+LVG RA+RVLF  VSLPLAV+ V YFINHRYDGVQLW ++ VPG+H   W++SF+SF FLYPSTFNLLEV
Sbjct:  163 QGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSVPGLHQLVWLSSFVSFFFLYPSTFNLLEV 236
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BLAST of mRNA_Ecto-sp13_S_contig62059.16926.1 vs. uniprot
Match: A0A0V0HWX5_SOLCH (Putative 15-cis-zeta-carotene isomerase-like n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HWX5_SOLCH)

HSP 1 Score: 119 bits (297), Expect = 8.650e-32
Identity = 52/74 (70.27%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    1 QGEELVGARAWRVLFGVVSLPLAVTAVAYFINHRYDGVQLWNIKMVPGVHDACWITSFISFVFLYPSTFNLLEV 222
            +GEEL+G RA+RVLF  VSLPLAV+ +AYFINHRYDGVQLW +  + G+H+  WI++FISF FLYPSTFNLLEV
Sbjct:   21 KGEELIGERAFRVLFAGVSLPLAVSTIAYFINHRYDGVQLWQLNSIAGIHELVWISNFISFFFLYPSTFNLLEV 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62059.16926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMZ6_ECTSI4.440e-4597.30NnrU domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835Z2B9_9STRA2.410e-3781.08NnrU protein-domain-containing protein n=1 Tax=Tri... [more]
A0A176WHR7_MARPO1.080e-3376.71NnrU domain-containing protein n=1 Tax=Marchantia ... [more]
A0A6F8P139_EUGGR2.490e-3375.68Zeta-carotene isomerase n=1 Tax=Euglena gracilis T... [more]
A0A2R6X2T9_MARPO4.030e-3376.71NnrU domain-containing protein n=3 Tax=Marchantia ... [more]
A0A7S3PUT8_9STRA1.050e-3270.83Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A8JI65_CHLRE1.800e-3268.92Predicted protein (Fragment) n=1 Tax=Chlamydomonas... [more]
A0A3S3NGG2_9MAGN5.710e-3271.2315-cis-zeta-carotene isomerase n=2 Tax=Cinnamomum ... [more]
A0A5D3CYJ4_CUCME5.870e-3272.9715-cis-zeta-carotene isomerase n=1 Tax=Cucumis mel... [more]
A0A0V0HWX5_SOLCH8.650e-3270.27Putative 15-cis-zeta-carotene isomerase-like n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62059contigEcto-sp13_S_contig62059:41..506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score156.4
Seed ortholog evalue5.2e-36
Seed eggNOG ortholog2880.D7FMZ6
Model size222
KEGG rclassRC02636
KEGG koko:K15744
KEGG ReactionR09655
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG ModuleM00097
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0016119,GO:0016120,GO:0016853,GO:0016859,GO:0042214,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046246,GO:0071704,GO:0090471,GO:1901576
Exons2
EggNOG free text desc.9,15,9'-tri-cis-zeta-carotene isomerase activity
EggNOG OGs2QSJ3@2759,COG4094@1
EC5.2.1.12
Cds size222
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463864.5075853-CDS-Ecto-sp13_S_contig62059:40..1721681463864.5075853-CDS-Ecto-sp13_S_contig62059:40..172Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62059 41..172 +
1681463864.524446-CDS-Ecto-sp13_S_contig62059:416..5061681463864.524446-CDS-Ecto-sp13_S_contig62059:416..506Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62059 417..506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62059.16926.1prot_Ecto-sp13_S_contig62059.16926.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62059 41..506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62059.16926.1

>prot_Ecto-sp13_S_contig62059.16926.1 ID=prot_Ecto-sp13_S_contig62059.16926.1|Name=mRNA_Ecto-sp13_S_contig62059.16926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
QGEELVGARAWRVLFGVVSLPLAVTAVAYFINHRYDGVQLWNIKMVPGVH
DACWITSFISFVFLYPSTFNLLEV
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mRNA from alignment at Ecto-sp13_S_contig62059:41..506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62059.16926.1 ID=mRNA_Ecto-sp13_S_contig62059.16926.1|Name=mRNA_Ecto-sp13_S_contig62059.16926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=466bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62059:41..506+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGGGAGGAGCTGGTTGGCGCACGCGCGTGGCGGGTACTTTTCGGAGT
TGTATCTCTTCCTCTGGCGGTGACGGCGGTGGCGTACTTCATCAACCATC
GCTACGACGGGGTGCAGCTGTGGAACATTAAGGTAGCAAATACCGCCCAC
ATTCCACACTGCACGATCGCGTGACCTCGGTTTGTCGATTTTGCTACAGC
GTAGCAGTACAAAAAGCTCAAGGTTCAATTTTTTTTCGTGCTTGCTTCGC
TATACGCCCGTTTCTGTTATGACACACCTGCCGAGTGGATGCGTGGTTGT
TTCACAAGGTTGTTGCATCCTTGTTATCAAATCTTGGTAGAATGTGCCGT
CGGTAACTGTGGTCCCTCCCACGCAGATGGTCCCTGGAGTTCACGACGCC
TGCTGGATCACCTCCTTTATTTCGTTCGTGTTCCTGTACCCTAGCACCTT
CAATCTTCTCGAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62059:41..506+

>mRNA_Ecto-sp13_S_contig62059.16926.1 ID=mRNA_Ecto-sp13_S_contig62059.16926.1|Name=mRNA_Ecto-sp13_S_contig62059.16926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62059:41..506+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGGGAGGAGCTGGTTGGCGCACGCGCGTGGCGGGTACTTTTCGGAGT
TGTATCTCTTCCTCTGGCGGTGACGGCGGTGGCGTACTTCATCAACCATC
GCTACGACGGGGTGCAGCTGTGGAACATTAAGATGGTCCCTGGAGTTCAC
GACGCCTGCTGGATCACCTCCTTTATTTCGTTCGTGTTCCTGTACCCTAG
CACCTTCAATCTTCTCGAGGTG
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