mRNA_Ecto-sp13_S_contig6205.16925.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6205.16925.1 vs. uniprot
Match: A0A6H5JWF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF7_9PHAE) HSP 1 Score: 765 bits (1976), Expect = 1.370e-268 Identity = 568/730 (77.81%), Postives = 583/730 (79.86%), Query Frame = 2
Query: 56 MNDEGDAKQGISREGPLRSIASPPFAGPVAHVNSGPLAHNHADNNAALSSYPGAPPPAATAAS---HPLDYDSQVHRQQXXXXXXXXXXXXXXXXXXXXXXXLPVAPTAAPISSSSTSSNDPLSHLLLRPNGMRMERDAPSSSSSVLPPPAPATEPATAKVAFSGNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLSAPSPAAFSGVALPFMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAYPPRQLPQEKTLDALVLEFLSTEAPPPPEPNTN---------WILFVRS-------------------AERTSRQP----KQAMDLRLRRAMGMLKLGRAADAAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEALDELTALKFELEGVIAAGDAPSSFPPSPSEDGMEATXXXXXXXXXXXXXXXX----AEATTWRRRVMLNLVNMFVGRGNWRMALELLEDLGEDQCGERSPLACSSSSHEEEIGEAGEEGARAPMDDLRVELLSRIGRVFLQFGSLEDAELYFRRAEAATAAAGSNPRILVNRGLLDFSRNEFVAAQENFRNAATEAAMLAAKEEPPDDRDDNWLWATLDQGAGLLDAALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDASSFRMS 2128
MN+E D+KQGISREGPLRSIASPPFAGPVAHVNSGPLAHNHADN+AALSS+PGAPPPAATAAS HPLDYDSQVH Q LPVAPTAAPISSSSTSSN+PLSHLLLRPNGMRMERDAP +S ATEPATAK FSGNP XXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXRS APSPA SGVALP +P XXXXXXXXXXXXXXXXXXXXXXXXXX YPPRQ PQEKTLDALVLEFLSTEAPPPPEP W+ + A R P QAMDLRLRRAMGMLKLGRAA+AAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EEALDELT LKFELEGVIAAGD PS+ PSPSEDGMEAT XXXXXXXXXXXXXXX AEATTWRRRVMLNLVNMFV RGNWRMAL LLEDLGEDQCGERS ACSSSSHE+ G A EEGARAP+DDLRVELLSRIGRVFLQFGSLEDAE+YFRRAEAA AA GSNPRILVNRGLL+FSRNEFVAAQENFRNAATEAAMLAAKEEPPDD DDNWLWATLDQGAGLLD ALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDID SSFRMS
Sbjct: 1 MNEEDDSKQGISREGPLRSIASPPFAGPVAHVNSGPLAHNHADNSAALSSHPGAPPPAATAASAASHPLDYDSQVHLPQQQQQRLPLQSPPRGPLSGGIP--LPVAPTAAPISSSSTSSNNPLSHLLLRPNGMRMERDAPPASXXXXXX-XXATEPATAKFDFSGNPPXXXXXXXXXXXTAGPEVSDSPKAPPMPALPXXXXXXXXXXXXXXXXXXXXXXXRSQPAPSPATLSGVALPCIPPPQLPXXXXXXXXXXXXXXXXXXXXXXXXXX----YPPRQPPQEKTLDALVLEFLSTEAPPPPEPVNETLALGDPDGWVAALGQLAWRRAWRKLVEIAGTMLVAHRGGGAPGLTADQAMDLRLRRAMGMLKLGRAAEAAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAEEEALDELTVLKFELEGVIAAGDGPSALAPSPSEDGMEATTXXXXXXXXXXXXXXXXXXXAEATTWRRRVMLNLVNMFVARGNWRMALGLLEDLGEDQCGERSTPACSSSSHEDVTGAAREEGARAPVDDLRVELLSRIGRVFLQFGSLEDAEVYFRRAEAAAAAVGSNPRILVNRGLLNFSRNEFVAAQENFRNAATEAAMLAAKEEPPDDSDDNWLWATLDQGAGLLDTALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDPSSFRMS 723
BLAST of mRNA_Ecto-sp13_S_contig6205.16925.1 vs. uniprot
Match: D8LLE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE2_ECTSI) HSP 1 Score: 367 bits (942), Expect = 2.000e-118 Identity = 254/369 (68.83%), Postives = 259/369 (70.19%), Query Frame = 2
Query: 1022 QAMDLRLRRAMGMLKLGRAADAAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEALDELTALKFELEGVIAAGDAPSSFPPSPSEDGMEATXXXXXXXXXXXXXXXXAEATTWRRRVMLNLVNMFVGRGNWRMALELLEDLGEDQCGERSPLACSSSSHEEEIGEAGEEGARAPMDDLRVELLSRIGRVFLQFGSLEDAELYFRRAEAATAAAGSNPRILVNRGLLDFSRNEFVAAQENFRNAATEAAMLAAKEEPPDDRDDNWLWATLDQGAGLLDAALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDASSFRMS 2128
QAMDLRLRRAMGMLKLGRAA+AAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EEALDELTALK V AA AGEEGARA +D++RVELLSRIGRVFLQFGSLEDAE+YFRRAEAA A AGSNPRILVNRGLLDFSRNEFVAAQENFRNAATEAAMLAAKEEPPD DDNWLWATLDQGAGLLDAALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDASSFRMS
Sbjct: 61 QAMDLRLRRAMGMLKLGRAAEAAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCEGEAEEEALDELTALK-----VTAAA--------------------------------------------------------------------------------------------AGEEGARASVDNVRVELLSRIGRVFLQFGSLEDAEVYFRRAEAAAAVAGSNPRILVNRGLLDFSRNEFVAAQENFRNAATEAAMLAAKEEPPDGSDDNWLWATLDQGAGLLDAALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDASSFRMS 332
BLAST of mRNA_Ecto-sp13_S_contig6205.16925.1 vs. uniprot
Match: A0A6H5KFR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR3_9PHAE) HSP 1 Score: 177 bits (449), Expect = 3.640e-49 Identity = 97/112 (86.61%), Postives = 101/112 (90.18%), Query Frame = 2
Query: 1793 MLAAKEEPPDDRDDNWLWATLDQGAGLLDAALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDASSFRMS 2128
M AA+EEPPD DD WL ATLDQGAGLLD+AL NLSLAM SCDVLRGVRTL+GLIRK+PRLYMLDVVIFNLCTLYDLSFDAVASAKK RTLQAV QRFRLEDID SSFRMS
Sbjct: 1 MEAAEEEPPDGSDDIWLRATLDQGAGLLDSALTNLSLAMC-SCDVLRGVRTLKGLIRKNPRLYMLDVVIFNLCTLYDLSFDAVASAKK-RTLQAVTQRFRLEDIDTSSFRMS 110
BLAST of mRNA_Ecto-sp13_S_contig6205.16925.1 vs. uniprot
Match: A0A7S2SXP0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SXP0_9STRA) HSP 1 Score: 127 bits (319), Expect = 2.490e-27 Identity = 86/263 (32.70%), Postives = 135/263 (51.33%), Query Frame = 2
Query: 1373 EATTWRRRVMLNLVNMFVGRGNWRMALELLEDLGEDQCGERSPLACSSSSHEEEIGEAGEEGARAPMDDLRVELLSRIGRVFLQFGSLEDAELYFRRAEAATAAAGSNPRILVNRGLLDFSRNEFVAAQENFRNAATEAAMLAAKEEPPDDRDDNWLW-----------ATLDQGAGLLDAALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDASSFRMS 2128
+A W RR ++LVN + WR+AL L+ L + P + +++ +EL SRI RV+LQ G++E A+ + + A A SNPR++++ GL+ F+ +EF AA + FR+ D RD + + LD LL A+NN ++ ++YSC + ++TLE LIR+DP + M D +FNLCTLY+LS D A KK+ L + +RF L+D+ ++SFRM+
Sbjct: 274 QALLWWRRATMSLVNTAIRSAEWRVALTELDALRHME-----PKPQDAVTYD-------------------LELASRIKRVYLQMGNVEVAQRFHEESLLAHPDAHSNPRVVMDAGLIAFAASEFPAAIQAFRSVIETERKRLRDGAFLDQRDAGATFDAEPIATTPTFSGLDTEDSLLVEAVNNFAITVMYSCQLDLAIQTLESLIREDPSVNMTDATVFNLCTLYELSCDNKAQIVKKKVLAEIGRRFFLDDLKSTSFRMT 512
BLAST of mRNA_Ecto-sp13_S_contig6205.16925.1 vs. uniprot
Match: A0A6G0XXV0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXV0_9STRA) HSP 1 Score: 112 bits (281), Expect = 3.690e-22 Identity = 81/264 (30.68%), Postives = 126/264 (47.73%), Query Frame = 2
Query: 1373 EATTWRRRVMLNLVNMFVGRGNWRMALELLEDLGEDQCGERSPLACSSSSHEEEIGEAGEEGARAPMDDL----RVELLSRIGRVFLQFGSLEDAELYFRRAEAATAAAGSNP-----RILVNRGLLDFSRNEFVAAQENFRNA----ATEAAMLAAKEEPPDDRDDNWLWATLDQGAGLLDAALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDASSFRM 2125
EA W + V +N+VN FV R + +AL L + L DD+ R+ LLSR+GR+ LQ G + AE F A +N RIL+N+GLL F++N+F A + F + E A+ + EP + DD ++ A NN+S+ +YSC+V V LE +++ DPR ++ ++FNL TLYDL D S +K ++ +++ + +E IDA+SFR+
Sbjct: 453 EAAIWHQIVGVNMVNSFVERKKFDLALRLAKSL-----------------------------YNVKRDDVDLRQRIVLLSRLGRINLQMGDFKGAEAIFAEAAWVNQHIAANEPDCAARILLNQGLLAFAQNKFKEALDAFNTILGVYSGEEAINGSSNEPFESWDDG----------DVISCAANNMSICALYSCEVQTAVNVLETILQADPRRHLHSSIVFNLSTLYDLVCDNANSTSRKEMIKRLSEAYGIEHIDATSFRI 677
BLAST of mRNA_Ecto-sp13_S_contig6205.16925.1 vs. uniprot
Match: A0A024G727_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G727_9STRA) HSP 1 Score: 106 bits (265), Expect = 3.880e-20 Identity = 67/188 (35.64%), Postives = 108/188 (57.45%), Query Frame = 2
Query: 1592 LLSRIGRVFLQFGSLEDAELYFRRAEAATAAAGSN------PRILVNRGLLDFSRNEFVAAQENFRNAATEAAMLAAKEEPPDDRDDNWLWAT----LDQGAGLLDAALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDASSFRM 2125
+LSRIGR+++Q G +E AE+ F+ + S+ P++L+N+GLL SR+ A FR+ + A+ + +D+ N + L+QG L+ AA+NN ++ +YSCDV V LE +IR P ++ +VV+FNL +LYDL +D S +K L+ +A + LE IDA++FR+
Sbjct: 565 VLSRIGRIYMQLGDIESAEILFKHVSVLSEKLSSDEKQPGHPQVLMNKGLLLLSRDNIQEAIHTFRSILH---LGLAEGKAQNDKWSNTILPDEDLMLEQGE-LICAAVNNYAICALYSCDVHGAVTMLERMIRLCPLRFLNEVVVFNLSSLYDLIYDNANSTNRKEMLKRIADLYNLEHIDAAAFRI 748
BLAST of mRNA_Ecto-sp13_S_contig6205.16925.1 vs. uniprot
Match: B8C9M0_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9M0_THAPS) HSP 1 Score: 102 bits (254), Expect = 9.850e-19 Identity = 91/286 (31.82%), Postives = 135/286 (47.20%), Query Frame = 2
Query: 1385 WRRRVMLNLVNMFVGRGNWRMALELLEDLG---EDQCGERSPLACSSSSHEEEIGEAGEEGARAPMDDL-----RVELLSRIGRVFLQFGSL-------EDAELYFRRAEAATAAAGSNP------------------RILVNRGLLDFSRNEFVAAQENFRNAATEAAMLAAKEEP-----PDDRDDNWLWATLDQGAGLLDAALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDASSFRMS 2128
WR + LVN FV + WR+AL LE+L E+ C S++ + EA R+ M +L VELLSR + LQ G+L D + R T++ + R LVN GLL F+ + A + FR+A + L A E P ++ D + L +LNNLSL ++YS ++ V+ LEGL+R+DP LY+ + + FN+CTLY+L D ++K+ LQ VA+RF L D+ SFR++
Sbjct: 595 WRPTIDNALVNAFVRKREWRLALNSLENLLNGLEESVVREVEWWCRSNT----VVEA----ERSLMKELILSSASVELLSRQILILLQSGALAAAHIVQSDVNSHSTRVREITSSQSTTQTTLAFLQKESTLVRQVPIRQLVNEGLLLFACANYSDATKCFRDALYKQKELGASSEIRPSGCPSFKELASPTLGFDADSSLTVESLNNLSLCLLYSGNMRLAVQELEGLVREDPTLYLTEGMAFNMCTLYELGSDGEECTRRKKILQRVAKRFFLHDVGVESFRLN 872
BLAST of mRNA_Ecto-sp13_S_contig6205.16925.1 vs. uniprot
Match: F0WJF3_9STRA (Uncharacterized protein AlNc14C121G6682 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJF3_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 7.990e-18 Identity = 66/199 (33.17%), Postives = 108/199 (54.27%), Query Frame = 2
Query: 1562 RAPMDDLRVELLSRIGRVFLQFGSLEDAELYFRRAEAATAAAGSNP------RILVNRGLLDFSRNEFVAAQENFRNAATEAAMLAAKEEPPDDRDDNW-----LWATLDQGAGLLDAALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDASSFRM 2125
R M ++ +LSRIGR+++Q G +E AE+ F+ + S+ ++L+N+GLL SR+ A E F +++L + ++ W L L + L+ AA+NN ++ +YSCDV V LE +IR P ++ +VV+FNL +LYDL +D S +K L+ +A + LE IDA++FR+
Sbjct: 575 RIKMAPDQIAVLSRIGRIYMQLGDIESAEMVFQHVRHLSEKLPSHQNQTLHAQVLMNKGLLLLSRDNVQEAIEIF------SSILHLELANGQTKNSQWSNEIVLDDLLLEQEDLICAAVNNYAICALYSCDVHGAVAMLEKMIRLSPVRFLNEVVVFNLSSLYDLIYDNANSTNRKEMLKRIADAYDLEHIDAAAFRI 767
BLAST of mRNA_Ecto-sp13_S_contig6205.16925.1 vs. uniprot
Match: L8H1C1_ACACA (Tetratricopeptide repeat domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H1C1_ACACA) HSP 1 Score: 89.0 bits (219), Expect = 1.080e-14 Identity = 60/180 (33.33%), Postives = 90/180 (50.00%), Query Frame = 2
Query: 1586 VELLSRIGRVFLQFGSLEDAELYFRRAEAATAAAGSNPRILVNRGLLDFSRNEFVAAQENFRNAATEAAMLAAKEEPPDDRDDNWLWATLDQGAGLLDAALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDASSFRM 2125
V LLS +GR+ LQ+G+L AE YFR E ++ +++NRG+ R+ + A F E PD+ +WA NN ++ +Y D+ R + +LE LI +P +LDVV+FNLCTLYDL D+ S KK+ L A+ +F +D D S ++
Sbjct: 450 VVLLSAVGRLLLQWGNLTGAERYFRDVEQLVTEPTNSVVVMMNRGMEYIGRDRYSDAARAFERVL---------ELEPDN-----VWAA------------NNRAVCWLYLRDLQRSITSLEQLIAANPEANLLDVVVFNLCTLYDLESDS--SGVKKKALLAIISQFASDDFDTSGIKV 601
BLAST of mRNA_Ecto-sp13_S_contig6205.16925.1 vs. uniprot
Match: A0A8C2WRZ9_CYCLU (Trafficking protein particle complex 12 n=9 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C2WRZ9_CYCLU) HSP 1 Score: 83.2 bits (204), Expect = 9.530e-13 Identity = 57/172 (33.14%), Postives = 89/172 (51.74%), Query Frame = 2
Query: 1583 RVELLSRIGRVFLQFGSLEDAELYFRRAEAATAAAGSNPR----ILVNRGLLDFSRNEFVAAQENFRNAATEAAMLAAKEEPPDDRDDNWLWATLDQGAGLLDAALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQR 2086
RV+LLS IGR+FLQ G ++ AE YF+ E A GS P +L+NR + S+N + A +F A +L + P A NN ++ ++Y + + LEGL+++DP LY+ + V+FNL T+Y+L + ++ KK+ L+AVA R
Sbjct: 661 RVQLLSGIGRIFLQIGDVKTAERYFQDVEKACQMTGSQPGHTTCVLMNRAFVSLSQNNYTEAHASF------AEVLKVDPKNP--------------------VANNNAAVCLLYLGRLKESLGQLEGLVQQDPALYLHESVLFNLTTMYELE-SSRSTQKKQALLEAVACR 805 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6205.16925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6205.16925.1 >prot_Ecto-sp13_S_contig6205.16925.1 ID=prot_Ecto-sp13_S_contig6205.16925.1|Name=mRNA_Ecto-sp13_S_contig6205.16925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=692bp MNDEGDAKQGISREGPLRSIASPPFAGPVAHVNSGPLAHNHADNNAALSSback to top mRNA from alignment at Ecto-sp13_S_contig6205:1490..7431- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6205.16925.1 ID=mRNA_Ecto-sp13_S_contig6205.16925.1|Name=mRNA_Ecto-sp13_S_contig6205.16925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5942bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6205:1490..7431- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6205:1490..7431- >mRNA_Ecto-sp13_S_contig6205.16925.1 ID=mRNA_Ecto-sp13_S_contig6205.16925.1|Name=mRNA_Ecto-sp13_S_contig6205.16925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2076bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6205:1490..7431- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |