mRNA_Ecto-sp13_S_contig6204.16923.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6204.16923.1
Unique NamemRNA_Ecto-sp13_S_contig6204.16923.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6204.16923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6204contigEcto-sp13_S_contig6204:2319..2847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size529
Hectar predicted targeting categorymitochondrion
Exons1
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463864.1042829-UTR-Ecto-sp13_S_contig6204:2318..23221681463864.1042829-UTR-Ecto-sp13_S_contig6204:2318..2322Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6204 2319..2322 +
1681463864.124028-UTR-Ecto-sp13_S_contig6204:2694..28471681463864.124028-UTR-Ecto-sp13_S_contig6204:2694..2847Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6204 2695..2847 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463864.113894-CDS-Ecto-sp13_S_contig6204:2322..26941681463864.113894-CDS-Ecto-sp13_S_contig6204:2322..2694Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6204 2323..2694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6204.16923.1prot_Ecto-sp13_S_contig6204.16923.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6204 2323..2694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6204.16923.1

>prot_Ecto-sp13_S_contig6204.16923.1 ID=prot_Ecto-sp13_S_contig6204.16923.1|Name=mRNA_Ecto-sp13_S_contig6204.16923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
MPAQVSVPWYRSGRWHRGACIQHLCVFHRGGWLRSERSLRGALKKQNEMI
SLRFRTGVGEMAPVGEMAPGFDKKTKQQTFEGNDRTRCHHSDYYGTPFSG
CQLQAFCSACRVTATIEERVGKI*
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mRNA from alignment at Ecto-sp13_S_contig6204:2319..2847+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6204.16923.1 ID=mRNA_Ecto-sp13_S_contig6204.16923.1|Name=mRNA_Ecto-sp13_S_contig6204.16923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=529bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6204:2319..2847+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTATGCCTGCACAGGTATCAGTACCATGGTACCGGTCGGGGAGATGGC
ACCGAGGGGCGTGCATACAACACCTGTGTGTGTTTCATCGGGGGGGATGG
CTCCGGTCGGAGAGATCGCTCCGGGGTGCTTTGAAAAAACAGAACGAAAT
GATTTCCTTGCGTTTCCGCACCGGGGTTGGAGAGATGGCACCGGTCGGAG
AGATGGCACCGGGGTTTGATAAAAAAACCAAGCAACAAACATTTGAAGGA
AACGATCGTACCCGGTGCCATCACTCCGACTATTACGGTACGCCGTTTTC
GGGCTGTCAACTACAAGCTTTTTGTTCCGCTTGCAGAGTAACCGCCACGA
TTGAAGAGAGGGTCGGCAAAATATAGAATGCTCTTCGGGCGAGACCTGCC
GGCACAAAACTCGACGAAAATAGCATCTACTCTAGTGGACGACGCCGGTC
TGGGACAAGGGTTGGAACGGATGGCGGCCGCCAAGAGGCGGAAGTTGTCC
CGCCAGGCACACACCAGGGCCTAGTCCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6204:2319..2847+

>mRNA_Ecto-sp13_S_contig6204.16923.1 ID=mRNA_Ecto-sp13_S_contig6204.16923.1|Name=mRNA_Ecto-sp13_S_contig6204.16923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6204:2319..2847+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTGCACAGGTATCAGTACCATGGTACCGGTCGGGGAGATGGCACCG
AGGGGCGTGCATACAACACCTGTGTGTGTTTCATCGGGGGGGATGGCTCC
GGTCGGAGAGATCGCTCCGGGGTGCTTTGAAAAAACAGAACGAAATGATT
TCCTTGCGTTTCCGCACCGGGGTTGGAGAGATGGCACCGGTCGGAGAGAT
GGCACCGGGGTTTGATAAAAAAACCAAGCAACAAACATTTGAAGGAAACG
ATCGTACCCGGTGCCATCACTCCGACTATTACGGTACGCCGTTTTCGGGC
TGTCAACTACAAGCTTTTTGTTCCGCTTGCAGAGTAACCGCCACGATTGA
AGAGAGGGTCGGCAAAATATAG
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