mRNA_Ecto-sp13_S_contig6202.16921.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6202.16921.1
Unique NamemRNA_Ecto-sp13_S_contig6202.16921.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6202.16921.1 vs. uniprot
Match: D7FRQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRQ8_ECTSI)

HSP 1 Score: 651 bits (1680), Expect = 1.400e-228
Identity = 468/565 (82.83%), Postives = 474/565 (83.89%), Query Frame = 1 
Query:    1 MAASELSELRAELWRTRDDLERIKSRGTPPSADSSPRRHFDRRRHRASPSPTLAAATVREVRNKDRDHRRHRHSEQHKDDGLEGGRGVRGGSGXXIRXXXXXXXXXXXXXPGSGADYDDEAPRGLGGTAASGSSPDGRQLKFGSSDGGVGSASSEGENAAKGGSSEEVAAEETLCNLELEGAAFKNWTEEASSIAVRLIEEVKMLRWEKASWTERERAAGRASERAAAEARAQAAHLEERLGLAEADGRKAQEALARAQQDVERERARTKTERAKAEGLRTAAXXXXXXXXXXXXXXXXXXYDXXXXXXXXXXXXXXXXXXXXXXLVEMLRREKEGADALQRRLDAARAASAKHEKERKEWRSSKARLEELRRSWGKQLNKGGGGGLACASVEKKMRSMAKENAALRARVGEAERARDRADADSLGHREELRRLTEQRDNLLLGATRLGGRRGLAASSSAETLXXXXXXXXXXXXXDANDVGPGAEGELEAQLEEARSEAKLARVAAQQERLRREAAAREKEEAVRQLHRLMGAARRAVGRRDSRLKSSRMETEVVWNALTEAVR 1695
            MAASELSELRAELWRTRDDLERIKSRGTPPSAD SPRRHFDRRRHRASPSPTLAA T  EVRNKDRD+RRHRHSEQHK DGLE G G RG SG  IR X XXXXXXXXXXPGSGADYDDEAPRGLGGTA+SGSS  GRQLKFGSS G VGSASSEGENAAKGGSSEEVAAEETLCNLELEGAAFKNWTEEASSIAVRLIEEVKMLRWEKASW ERERAA             QA HLEERLGLAEADGR+AQEALARAQQDVER           AEGLR A XXXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXXLVEMLRREKEGADALQRRLDAARAASA+HEKERKEWRSS                                  M KENAALRARVGEAERARDRADADSLGHREELRRLTEQRDNLLLGATRLGGRRGL ASS AETL      XXXXXXXDA DVGPGA+GELEAQLE+ARSEAKLARVAAQQERLRREAAAREKEEAVRQLHRLMGAARRAVGRRDSRLKSSRMETEVVWNALTEAVR
Sbjct:    1 MAASELSELRAELWRTRDDLERIKSRGTPPSADCSPRRHFDRRRHRASPSPTLAATTACEVRNKDRDYRRHRHSEQHKGDGLEAGGGARGDSGGGIRSXPXXXXXXXXXXPGSGADYDDEAPRGLGGTASSGSSHGGRQLKFGSSRGRVGSASSEGENAAKGGSSEEVAAEETLCNLELEGAAFKNWTEEASSIAVRLIEEVKMLRWEKASWAERERAAEXXXXXXXXXXXXQADHLEERLGLAEADGRRAQEALARAQQDVERXXXXXXXXXXXAEGLRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVEMLRREKEGADALQRRLDAARAASARHEKERKEWRSSXXXXXXXXXXXXXXXX----------XXXXXXXXMTKENAALRARVGEAERARDRADADSLGHREELRRLTEQRDNLLLGATRLGGRRGLVASSPAETLAELLAAXXXXXXXDATDVGPGADGELEAQLEQARSEAKLARVAAQQERLRREAAAREKEEAVRQLHRLMGAARRAVGRRDSRLKSSRMETEVVWNALTEAVR 555
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6202.16921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRQ8_ECTSI1.400e-22882.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6202contigEcto-sp13_S_contig6202:2291..4672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1698
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_003480.1
Cds size1698
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463864.0259814-CDS-Ecto-sp13_S_contig6202:2290..28151681463864.0259814-CDS-Ecto-sp13_S_contig6202:2290..2815Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6202 2291..2815 -
1681463864.037641-CDS-Ecto-sp13_S_contig6202:3499..46721681463864.037641-CDS-Ecto-sp13_S_contig6202:3499..4672Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6202 3500..4672 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6202.16921.1prot_Ecto-sp13_S_contig6202.16921.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6202 2291..4672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6202.16921.1

>prot_Ecto-sp13_S_contig6202.16921.1 ID=prot_Ecto-sp13_S_contig6202.16921.1|Name=mRNA_Ecto-sp13_S_contig6202.16921.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=566bp
MAASELSELRAELWRTRDDLERIKSRGTPPSADSSPRRHFDRRRHRASPS
PTLAAATVREVRNKDRDHRRHRHSEQHKDDGLEGGRGVRGGSGGGIRSGP
TSPPTSGGSSPGSGADYDDEAPRGLGGTAASGSSPDGRQLKFGSSDGGVG
SASSEGENAAKGGSSEEVAAEETLCNLELEGAAFKNWTEEASSIAVRLIE
EVKMLRWEKASWTERERAAGRASERAAAEARAQAAHLEERLGLAEADGRK
AQEALARAQQDVERERARTKTERAKAEGLRTAAATAAAAASAAQQEKEKM
RYDQQRKEEARQQQERDAAAGGGGGLVEMLRREKEGADALQRRLDAARAA
SAKHEKERKEWRSSKARLEELRRSWGKQLNKGGGGGLACASVEKKMRSMA
KENAALRARVGEAERARDRADADSLGHREELRRLTEQRDNLLLGATRLGG
RRGLAASSSAETLAELLAAAAAGASADANDVGPGAEGELEAQLEEARSEA
KLARVAAQQERLRREAAAREKEEAVRQLHRLMGAARRAVGRRDSRLKSSR
METEVVWNALTEAVR*
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mRNA from alignment at Ecto-sp13_S_contig6202:2291..4672-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6202.16921.1 ID=mRNA_Ecto-sp13_S_contig6202.16921.1|Name=mRNA_Ecto-sp13_S_contig6202.16921.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2382bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6202:2291..4672- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCCTCCGAGCTTTCGGAGCTGCGCGCCGAGCTTTGGCGAACACG
CGACGACCTCGAGCGGATAAAGTCTCGTGGCACCCCGCCGAGCGCCGACT
CTTCGCCCCGGCGGCACTTCGATCGCCGTCGCCACCGCGCTTCCCCTTCT
CCCACCCTCGCTGCTGCTACCGTGCGCGAAGTAAGGAACAAAGATCGCGA
CCATCGTCGACATCGGCACAGCGAGCAGCACAAGGACGACGGGCTAGAGG
GCGGCAGGGGGGTACGGGGTGGTAGCGGTGGGGGGATTAGAAGCGGGCCA
ACCAGCCCTCCAACAAGCGGAGGCTCATCGCCAGGATCGGGGGCGGACTA
CGATGATGAGGCCCCGAGAGGTCTGGGCGGAACAGCCGCTTCTGGGTCTT
CTCCCGATGGTCGGCAACTGAAGTTCGGTAGCAGCGATGGCGGCGTTGGC
AGCGCCAGCTCAGAGGGCGAGAACGCCGCGAAAGGCGGATCGTCGGAGGA
GGTGGCCGCAGAAGAGACCCTCTGCAACCTGGAGCTCGAGGGAGCGGCGT
TCAAGAATTGGACGGAAGAAGCTTCGTCGATCGCCGTCCGCCTCATCGAG
GAGGTCAAGATGCTCCGCTGGGAGAAGGCTAGCTGGACGGAACGGGAGCG
CGCCGCCGGGCGCGCGTCAGAACGAGCGGCGGCGGAGGCGAGGGCGCAGG
CCGCCCACCTGGAGGAGCGTCTGGGCTTAGCCGAGGCCGACGGGAGGAAG
GCGCAAGAGGCGCTGGCGAGGGCGCAGCAGGACGTGGAGAGAGAGAGGGC
GCGAACGAAAACGGAGCGAGCTAAGGCGGAAGGTCTCCGCACTGCGGCGG
CAACGGCGGCGGCCGCGGCCTCGGCGGCGCAGCAGGAGAAAGAGAAGATG
CGGTACGATCAACAACGGAAGGAGGAGGCGAGGCAGCAGCAGGAAAGGGA
CGCGGCCGCTGGCGGGGGAGGGGGATTGGTTGAGATGTTGAGGCGCGAGA
AGGAGGGGGCGGATGCCCTGCAGCGGAGGCTGGACGCGGCCAGGGCGGCA
TCGGCGAAGCACGAGAAGGAAAGGAAGGAGTGGCGATCCTCGAAGGCGAG
GTTGGAGGAGCTGCGCCGATCATGGGGGAAACAGCTGAATAAGGGGGGCG
GGGGGGGGCTCGCTTGCGCTTCTGTTCATCGACACTAGCTGCACCGCCAG
AACCCCGGCGGGAGACGGTTTTGGTCGGGTGGCGTGCACGATTGTAGCAG
ATAGACAATGCATCTCCCACGGGAGAGCAGACGCGTTCATGGAGCCCGGA
GGATGGTCCTACCTGTCAACGGTGCTCGCACCGGCAACACACGGCGACAT
TTATTTTTTGTCAATTGCTTAAATCAGAGGACCACCCTGGCATTGGTCAG
TTCCAATACTACTGTTGAGATTCAGCTGGAGGGGCGACGGGGAGGGTTGT
AGTACATGGTTCCATGCGATACGGTCCATAATTGTAGCAACAGCGATGGT
TTGCTTTATGCCGGGAGCGAGGGTTTCCTTCTTCGAAGAAGCATTGCTGC
AAGCCATCAAACTGTTGGGCCATCTACGCAGATGGTGCTCGCCTCCTTCA
ATCTCTCTCGCCAAACCTGTTAAATGGGAGGCAGCATGCCGATGGAAATG
TCGACCCTGTCCTTCTAAATGAATTCTCACCTGTGTCCCGTCTACGATGG
ATTTTGCGGGTCTCTGTTGTCTGCTCTAGATCACTGATCAGAGTCTTTGC
CATTCGTCACCAGGAGGTGCATATCTCAAGCTGGTGTCTGCCTACCCTCT
GAGGGGGGCTTTAGTTTTCGCTGGTCTTGTCTCACCCCTCCCCACCCCCG
TGCTCAGGTTGAGAAGAAGATGCGATCCATGGCGAAGGAGAACGCCGCCC
TCCGAGCCAGGGTCGGCGAGGCGGAGCGGGCGAGGGACCGCGCCGATGCG
GACTCCCTCGGCCACCGCGAAGAACTCCGGCGGCTCACCGAGCAGCGCGA
CAACCTCCTCCTCGGGGCCACTCGCCTCGGCGGAAGGCGCGGCCTGGCGG
CCTCCTCGTCAGCGGAAACCCTAGCGGAGCTCCTGGCGGCCGCCGCGGCT
GGGGCCTCGGCCGACGCCAACGACGTCGGGCCGGGGGCGGAGGGGGAGCT
CGAGGCCCAACTGGAGGAGGCGAGGTCGGAGGCGAAGCTCGCGAGGGTGG
CGGCACAGCAGGAGCGGTTGAGAAGGGAGGCGGCGGCGAGGGAGAAGGAG
GAGGCGGTGCGGCAGCTGCACCGACTGATGGGGGCGGCGAGGAGGGCCGT
GGGGAGGAGAGACTCGAGGCTCAAGTCGAGCCGGATGGAGACGGAGGTGG
TCTGGAACGCGCTAACGGAGGCCGTTCGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6202:2291..4672-

>mRNA_Ecto-sp13_S_contig6202.16921.1 ID=mRNA_Ecto-sp13_S_contig6202.16921.1|Name=mRNA_Ecto-sp13_S_contig6202.16921.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1698bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6202:2291..4672- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCCTCCGAGCTTTCGGAGCTGCGCGCCGAGCTTTGGCGAACACG
CGACGACCTCGAGCGGATAAAGTCTCGTGGCACCCCGCCGAGCGCCGACT
CTTCGCCCCGGCGGCACTTCGATCGCCGTCGCCACCGCGCTTCCCCTTCT
CCCACCCTCGCTGCTGCTACCGTGCGCGAAGTAAGGAACAAAGATCGCGA
CCATCGTCGACATCGGCACAGCGAGCAGCACAAGGACGACGGGCTAGAGG
GCGGCAGGGGGGTACGGGGTGGTAGCGGTGGGGGGATTAGAAGCGGGCCA
ACCAGCCCTCCAACAAGCGGAGGCTCATCGCCAGGATCGGGGGCGGACTA
CGATGATGAGGCCCCGAGAGGTCTGGGCGGAACAGCCGCTTCTGGGTCTT
CTCCCGATGGTCGGCAACTGAAGTTCGGTAGCAGCGATGGCGGCGTTGGC
AGCGCCAGCTCAGAGGGCGAGAACGCCGCGAAAGGCGGATCGTCGGAGGA
GGTGGCCGCAGAAGAGACCCTCTGCAACCTGGAGCTCGAGGGAGCGGCGT
TCAAGAATTGGACGGAAGAAGCTTCGTCGATCGCCGTCCGCCTCATCGAG
GAGGTCAAGATGCTCCGCTGGGAGAAGGCTAGCTGGACGGAACGGGAGCG
CGCCGCCGGGCGCGCGTCAGAACGAGCGGCGGCGGAGGCGAGGGCGCAGG
CCGCCCACCTGGAGGAGCGTCTGGGCTTAGCCGAGGCCGACGGGAGGAAG
GCGCAAGAGGCGCTGGCGAGGGCGCAGCAGGACGTGGAGAGAGAGAGGGC
GCGAACGAAAACGGAGCGAGCTAAGGCGGAAGGTCTCCGCACTGCGGCGG
CAACGGCGGCGGCCGCGGCCTCGGCGGCGCAGCAGGAGAAAGAGAAGATG
CGGTACGATCAACAACGGAAGGAGGAGGCGAGGCAGCAGCAGGAAAGGGA
CGCGGCCGCTGGCGGGGGAGGGGGATTGGTTGAGATGTTGAGGCGCGAGA
AGGAGGGGGCGGATGCCCTGCAGCGGAGGCTGGACGCGGCCAGGGCGGCA
TCGGCGAAGCACGAGAAGGAAAGGAAGGAGTGGCGATCCTCGAAGGCGAG
GTTGGAGGAGCTGCGCCGATCATGGGGGAAACAGCTGAATAAGGGGGGCG
GGGGGGGGCTCGCTTGCGCTTCTGTTGAGAAGAAGATGCGATCCATGGCG
AAGGAGAACGCCGCCCTCCGAGCCAGGGTCGGCGAGGCGGAGCGGGCGAG
GGACCGCGCCGATGCGGACTCCCTCGGCCACCGCGAAGAACTCCGGCGGC
TCACCGAGCAGCGCGACAACCTCCTCCTCGGGGCCACTCGCCTCGGCGGA
AGGCGCGGCCTGGCGGCCTCCTCGTCAGCGGAAACCCTAGCGGAGCTCCT
GGCGGCCGCCGCGGCTGGGGCCTCGGCCGACGCCAACGACGTCGGGCCGG
GGGCGGAGGGGGAGCTCGAGGCCCAACTGGAGGAGGCGAGGTCGGAGGCG
AAGCTCGCGAGGGTGGCGGCACAGCAGGAGCGGTTGAGAAGGGAGGCGGC
GGCGAGGGAGAAGGAGGAGGCGGTGCGGCAGCTGCACCGACTGATGGGGG
CGGCGAGGAGGGCCGTGGGGAGGAGAGACTCGAGGCTCAAGTCGAGCCGG
ATGGAGACGGAGGTGGTCTGGAACGCGCTAACGGAGGCCGTTCGCTGA
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