mRNA_Ecto-sp13_S_contig6201.16920.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6201.16920.1 vs. uniprot
Match: D7FPC3_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPC3_ECTSI) HSP 1 Score: 452 bits (1164), Expect = 4.470e-158 Identity = 249/281 (88.61%), Postives = 254/281 (90.39%), Query Frame = 1
Query: 1 MDSVMTHLQAALTIGEEIVDRNPNFCLTKYMRQMEANYGGSRASWFLGLFSVVTVMLYFIGGLALIANLIGFCYPAFASFKAIDSPDALASQQLLSYWAIFGAFFTLETSFSFLTAAIPYYSIAKGFIFVYSFHPFTRGATHLYDVVIRPLVIQHVLPGSSQARRAXXXXXXXXXXXXXXXXS-------------VPEFGERAVNTGAPAPTVAAGFVSPDLSELRVVVVSASDVVPTEAPGAGVDCDPYCVLEVLPEGTRPKQGAAENTKYKTVCKVCT 804
MDSVMTHLQAALTIGEEIVDRNPNFCLTKYMRQMEANYGGSRASWFLGLFS+VTV+LYFIGGLALIANLIGFCYPAFASFKAIDSPDALASQQLLSYW IFGAFFTLETSFS LTAAIPYYSIAKGFIFVYSFHPFTRGATHLYDVVIRPLVIQHVLPGSSQA+RA XXXXXXXXXXXX VPEF ER ++TGAPA TV AGFVSPDLSELRVVVVSASDVVPTEAPGAGVDCDPYCVLEVLPEGTR KQGAAENTKYKTVCK T
Sbjct: 1 MDSVMTHLQAALTIGEEIVDRNPNFCLTKYMRQMEANYGGSRASWFLGLFSIVTVILYFIGGLALIANLIGFCYPAFASFKAIDSPDALASQQLLSYWVIFGAFFTLETSFSVLTAAIPYYSIAKGFIFVYSFHPFTRGATHLYDVVIRPLVIQHVLPGSSQAKRAPPSAXXXXXXXXXXXXXXXXXXXXXXXSSPVPEFAERVMSTGAPAVTVPAGFVSPDLSELRVVVVSASDVVPTEAPGAGVDCDPYCVLEVLPEGTRLKQGAAENTKYKTVCKTGT 281
BLAST of mRNA_Ecto-sp13_S_contig6201.16920.1 vs. uniprot
Match: K0S5M7_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S5M7_THAOC) HSP 1 Score: 99.8 bits (247), Expect = 1.750e-22 Identity = 49/134 (36.57%), Postives = 78/134 (58.21%), Query Frame = 1
Query: 46 EEIVDRNPNFCLTKYMRQMEANYGGSRASWFLGLFSVVTVMLYFIGGLALIANLIGFCYPAFASFKAIDSPDALASQQLLSYWAIFGAFFTLETSFSFLTAAIPYYSIAKGFIFVYSFHPFTRGATHLYDVVIR 447
++ + PN C +R++E G + +F+ V+T +++ +GG+ L+++L+GF YPA+ SFKAIDSPD Q L+YW IF F E SFL IP+Y + K F + +HP GAT +Y +++
Sbjct: 13 DDFIAGYPNICQYDRLRELEKKTGQPKVYFFVLFVGVITSVIFGLGGMKLVSDLMGFAYPAYMSFKAIDSPDPTDDTQWLTYWCIFALFSITENVMSFLVEWIPFYYVIKVAFFTWLYHPKFNGATLMYKQIVQ 146
BLAST of mRNA_Ecto-sp13_S_contig6201.16920.1 vs. uniprot
Match: A0A7S1B895_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B895_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 6.130e-22 Identity = 54/154 (35.06%), Postives = 90/154 (58.44%), Query Frame = 1
Query: 7 SVMTHLQAALTIGEEIVDRNPNFCLTKYMRQMEANYGGSRASWFLGLFSVVTVMLYFIGGLALIANLIGFCYPAFASFKAIDSPDALASQQLLSYWAIFGAFFTLETSFSFLTAAIPYYSIAKGFIFVYSFHPFTRGATHLYDVVIRPLVIQHV 468
+ M L AALT + +++++P+ + +++E G S+ + G T+ L +GG I++LIGF YPA+ SFKAIDS + Q L+YW +F +F +E++ SFL + IP+Y K ++ +HP GA +Y V+RPL+I ++
Sbjct: 12 TAMETLNAALTNVDTLMEKHPSVFQYEKFKKLENKTGYSKVFFLFGAVVAGTLFLIAMGGTQFISDLIGFVYPAYCSFKAIDSANTEEDVQWLTYWVVFASFSIIESAASFLVSWIPFYFFIKLSFLIWLYHPTFLGAQLVYKQVLRPLIIPYM 165
BLAST of mRNA_Ecto-sp13_S_contig6201.16920.1 vs. uniprot
Match: A0A7S0BVK6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BVK6_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 1.050e-21 Identity = 55/150 (36.67%), Postives = 90/150 (60.00%), Query Frame = 1
Query: 22 LQAALTIGEEIVDRNPNFCLTKYMRQMEANYGGSRASWFLGLFSVVT-VMLYFIGGLALIANLIGFCYPAFASFKAIDSPDALASQQLLSYWAIFGAFFTLETSFSFLTAAIPYYSIAKGFIFVYSFHPFTRGATHLYDVVIRPLVIQHV 468
L+ ALT +E + + P+ + ++ +E G ++ +F+ LFS++T +YFIGG L+ +L+ F YPA+ASFKAIDSPD Q L+YW +F +E+ SF+ IP+Y K FV+ +HP GA +Y ++RP ++ ++
Sbjct: 26 LEQALTRTDEFLAKYPSLFQYETLKVLEEKTGFNKVYFFV-LFSLLTGTTIYFIGGAKLVTDLVSFIYPAYASFKAIDSPDQNDDTQWLTYWVVFSFVTLMESILSFVIQWIPFYFFIKVAFFVWLYHPHFLGAGLVYSQILRPHIVPYL 174
BLAST of mRNA_Ecto-sp13_S_contig6201.16920.1 vs. uniprot
Match: A0A7S2HJA8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HJA8_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 3.160e-21 Identity = 51/154 (33.12%), Postives = 89/154 (57.79%), Query Frame = 1
Query: 13 MTH--LQAALTIGEEIVDRNPNFCLTKYMRQMEANYGGSRASWFLGLFSVVTVMLYFIGGLALIANLIGFCYPAFASFKAIDSPDALASQQLLSYWAIFGAFFTLETSFSFLTAAIPYYSIAKGFIFVYSFHPFTRGATHLYDVVIRPLVIQHV 468
MTH LQ AL + + + P+ ++++++E G +R +FL ++++ + + +GG L+ +L+ F YPA+ SFKAIDS Q L+YW +FG F E + +FL IP+Y + K F++ +HP GA +Y VI+P ++ ++
Sbjct: 1 MTHPQLQEALDKIDAFLAKYPSLSQYEHLKELEKKTGYNRVYFFLLFSALLSAITFLLGGAKLVTDLVSFVYPAYMSFKAIDSGSPTEDTQWLTYWVVFGFFSIFEGTLTFLVEMIPFYFMIKVGFFIWLYHPKFLGAALVYSQVIKPAIVPYL 154
BLAST of mRNA_Ecto-sp13_S_contig6201.16920.1 vs. uniprot
Match: A0A7S2UQE6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQE6_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 5.160e-21 Identity = 54/149 (36.24%), Postives = 84/149 (56.38%), Query Frame = 1
Query: 22 LQAALTIGEEIVDRNPNFCLTKYMRQMEANYGGSRASWFLGLFSVVTVMLYFIGGLALIANLIGFCYPAFASFKAIDSPDALASQQLLSYWAIFGAFFTLETSFSFLTAAIPYYSIAKGFIFVYSFHPFTRGATHLYDVVIRPLVIQHV 468
+QA L G+ + + PN ++Q+E G S+ + V + + +GGL I++LI F YPA+ SFKAIDSPD Q L+YW +F F +ET+ SF + IP+Y K F++ +HP GA LY+ V++P +I ++
Sbjct: 10 VQAVLDKGDAFLAKYPNLLQYDKLQQLEDKVGYSKVFFAAAFALVFSSAILALGGLKFISDLIAFLYPAYMSFKAIDSPDPSKDTQWLTYWVVFSFFSIIETTCSFFISWIPFYFFIKLGFFLWLYHPQFLGAEVLYNQVLKPCLIPYL 158
BLAST of mRNA_Ecto-sp13_S_contig6201.16920.1 vs. uniprot
Match: A0A6U3XWG0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3XWG0_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.250e-20 Identity = 49/154 (31.82%), Postives = 90/154 (58.44%), Query Frame = 1
Query: 13 MTH--LQAALTIGEEIVDRNPNFCLTKYMRQMEANYGGSRASWFLGLFSVVTVMLYFIGGLALIANLIGFCYPAFASFKAIDSPDALASQQLLSYWAIFGAFFTLETSFSFLTAAIPYYSIAKGFIFVYSFHPFTRGATHLYDVVIRPLVIQHV 468
MTH L+ AL + + + P+ ++++++E G + +F+ ++++ +YF+GG L+ +L+ F YPA+ SFKAIDS + Q L+YW +F F LE + + L +IP+Y + K F++ +HP GA +Y +I+P V+ ++
Sbjct: 1 MTHPKLEEALVKTDAFLAKYPSLSQYEHLKELEKKTGYHKVYFFILFSTLISTAIYFLGGAKLVTDLVSFLYPAYMSFKAIDSGNPTEDTQWLTYWVVFSFFSILEGTIAPLADSIPFYFVLKVGFFIWLYHPKFLGAALVYSQIIKPNVVPYL 154
BLAST of mRNA_Ecto-sp13_S_contig6201.16920.1 vs. uniprot
Match: A0A7S4IT74_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IT74_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.420e-20 Identity = 51/146 (34.93%), Postives = 85/146 (58.22%), Query Frame = 1
Query: 31 ALTIGEEIVDRNPNFCLTKYMRQMEANYGGSRASWFLGLFSVVTVMLYFIGGLALIANLIGFCYPAFASFKAIDSPDALASQQLLSYWAIFGAFFTLETSFSFLTAAIPYYSIAKGFIFVYSFHPFTRGATHLYDVVIRPLVIQHV 468
AL + + + P+ K + ++E G S+ +F ++++ ++Y +GG LI++L+ F YPA+ SFK IDS D+ Q L+YW +FG LET SFL + IP Y + K F++ +HP T GA +Y +RPL++ ++
Sbjct: 10 ALEKVDAFLAKYPSLFQYKKLAEIEKKTGHSKVYFFFLFSTLLSTVIYLLGGPKLISDLVSFLYPAYMSFKTIDSEDSEGDAQWLTYWVVFGVISILETCCSFLVSWIPLYFVLKIAFFIWLWHPKTLGAGVVYTQALRPLLLPYL 155
BLAST of mRNA_Ecto-sp13_S_contig6201.16920.1 vs. uniprot
Match: A0A7R9VWU9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VWU9_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 2.770e-20 Identity = 49/149 (32.89%), Postives = 86/149 (57.72%), Query Frame = 1
Query: 22 LQAALTIGEEIVDRNPNFCLTKYMRQMEANYGGSRASWFLGLFSVVTVMLYFIGGLALIANLIGFCYPAFASFKAIDSPDALASQQLLSYWAIFGAFFTLETSFSFLTAAIPYYSIAKGFIFVYSFHPFTRGATHLYDVVIRPLVIQHV 468
++ A+ + + + P+ + ++++E G S+ +F+ ++ +LY IGG L+++L+ F YPA+ SFK IDS D + Q L+YW +FG +ET SFL IP Y + K F++ +HP T GA +Y +RPL++ ++
Sbjct: 7 IKKAIEKADAFLAKYPSLFQYEKLKELEVKTGYSKVYFFMFFSFLLGSLLYLIGGPKLVSDLVSFLYPAYMSFKTIDSADGADNAQWLTYWVVFGVISIVETCCSFLVTWIPLYFVLKIAFFIWLWHPKTLGAGVIYTQALRPLLMPYL 155
BLAST of mRNA_Ecto-sp13_S_contig6201.16920.1 vs. uniprot
Match: A0A7S2F8X6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F8X6_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.160e-19 Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 1
Query: 157 VTVMLYFIGGLALIANLIGFCYPAFASFKAIDSPDALASQQLLSYWAIFGAFFTLETSFSFLTAAIPYYSIAKGFIFVYSFHPFTRGATHLYDVVIRPLVIQHVL 471
V ++L +G LI NL+GF YPA SFKAIDS D+ Q LSYW I+G+F +E +F ++ AI Y+ I K ++ +HP T+GAT +Y+ V+ P V+ H++
Sbjct: 51 VLLILALLGASRLIINLLGFAYPALQSFKAIDSKDSKTDTQWLSYWIIYGSFSIIEHAFVYVINAIMYFPIFKMGFLIWCYHPSTQGATTVYEKVLAPYVVPHLM 155 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6201.16920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6201.16920.1 >prot_Ecto-sp13_S_contig6201.16920.1 ID=prot_Ecto-sp13_S_contig6201.16920.1|Name=mRNA_Ecto-sp13_S_contig6201.16920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=270bp MDSVMTHLQAALTIGEEIVDRNPNFCLTKYMRQMEANYGGSRASWFLGLFback to top mRNA from alignment at Ecto-sp13_S_contig6201:2626..8358+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6201.16920.1 ID=mRNA_Ecto-sp13_S_contig6201.16920.1|Name=mRNA_Ecto-sp13_S_contig6201.16920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5733bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6201:2626..8358+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6201:2626..8358+ >mRNA_Ecto-sp13_S_contig6201.16920.1 ID=mRNA_Ecto-sp13_S_contig6201.16920.1|Name=mRNA_Ecto-sp13_S_contig6201.16920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=810bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6201:2626..8358+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |