mRNA_Ecto-sp13_S_contig620.16919.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig620.16919.1 vs. uniprot
Match: A0A6H5JG03_9PHAE (BHLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG03_9PHAE) HSP 1 Score: 776 bits (2003), Expect = 7.510e-268 Identity = 562/632 (88.92%), Postives = 573/632 (90.66%), Query Frame = 1
Query: 757 MPFPSHQLGAQMAASGGDSGGSGTNNGYRDVAAMDATGLGLWGWCFPSPTPIMGAGVEGGAPTSXXXXXXXXXRAGGTILAGVPGLGSVGNFQALAATPAGTPAAAGPQQYPTPMPRGHRFLEPGDVRPPNAAGAWGGVSGISNAGGGVNSSEGDVAGLGVDELGASAAVAHSGGTEQQEGSVGXXXXXXXXXXXXXXXXXXELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQQTFQRLSAMLTDGTGKAPEHVLSKAVLKNKDQDLSLSLTLVRDALGRPKYFLCSLLPNTPAASPPLSPLPGPLSGGGLLPGPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDAKSSVSTTGSDSGVNPTLTPAAAEPGAISVSTADDXXXXXXXXXXXXXXXXXXXX---ESVNGCSSGSDGDVGSTMMSSREVVELVEVFESSRGGDSRGKDGMATKRR 2643
MPFPSHQLGA MAASGGDSGGSGTNNGY DVAAMDATGLGLWGWCFPSPTPIMGAGVEG AP S X RAGGTILAGVPGLGSVGNFQALA +PA T AAAGPQQYP PMPRG +FLEPGDVRPPN AGAWGGVS I+NAGGGV+SSEG+VAGLGV ELGA+A HSGGTEQQEGSVG XXXXXXXXXXX ELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQ+TFQRLSAMLTDGTGKAPEHVLSKAVLKNKDQDLSLSLTLVRDALGRPKYFLCSLLPNTPAASPPLS +PGPL+ GGLLPGPG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX AGDAKSSVSTTGS SGVNP+LTPAAAEPG ISVSTADDXXXXXXXXXXXXXXXXXXXX ES+NGCSSGSDGDVGS MMSSREVVELVEVFESSRGGDSRGKD MA KRR
Sbjct: 1 MPFPSHQLGALMAASGGDSGGSGTNNGYPDVAAMDATGLGLWGWCFPSPTPIMGAGVEGRAPISAGAGXGA--RAGGTILAGVPGLGSVGNFQALATSPAATLAAAGPQQYPRPMPRGQQFLEPGDVRPPNVAGAWGGVSRINNAGGGVSSSEGEVAGLGVGELGAAA---HSGGTEQQEGSVGSGXXXXXXXXXXXNPS--ELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETFQRLSAMLTDGTGKAPEHVLSKAVLKNKDQDLSLSLTLVRDALGRPKYFLCSLLPNTPAASPPLSTVPGPLASGGLLPGPGDAACAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPVGSLPDAXXXXXXXXXXXXXXXXXXXXXXXXGS--AGDAKSSVSTTGSHSGVNPSLTPAAAEPGGISVSTADDXXXXXXXXXXXXXXXXXXXXXDTESINGCSSGSDGDVGSMMMSSREVVELVEVFESSRGGDSRGKDDMAAKRR 623
BLAST of mRNA_Ecto-sp13_S_contig620.16919.1 vs. uniprot
Match: D7G8G2_ECTSI (BHLH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G2_ECTSI) HSP 1 Score: 508 bits (1309), Expect = 5.150e-168 Identity = 308/348 (88.51%), Postives = 315/348 (90.52%), Query Frame = 1
Query: 757 MPFPSHQLGAQMAASGGDSGGSGTNNGYRDVAAMDATGLGLWGWCFPSPTPIMGAGVEGGAPTSXXXXXXXXXRAGGTILAGVPGLGSVGNFQALAATPAGTPAAAGPQQYPTPMPRGHRFLEPGDVRPPNAAGAWGGVSGISNAGGGVNSSEGDVAGLGVDELGASAAVAHSGGTEQQEGSVGXXXXXXXXXXXXXXXXXXELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQQTF 1800
MPFPSHQLGA MAASGGD G SGTNNGYRDVAA+DATGLGLWGWCFPSPTPIMGAGVEG XXXXXXXXXRAGGTILAGVPGLGSVGNFQALAATPA GPQQYP PMPRG +FLEPGDVRPPNAAGAWGGVSG++NAGGGV+SSEGDVAGLGVDELGA+AA XXXXXXXXXXXXXXXX ELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQ+TF
Sbjct: 1 MPFPSHQLGALMAASGGDCGNSGTNNGYRDVAALDATGLGLWGWCFPSPTPIMGAGVEGXX--XXXXXXXXXXRAGGTILAGVPGLGSVGNFQALAATPAAXXXXXGPQQYPRPMPRGQQFLEPGDVRPPNAAGAWGGVSGVNNAGGGVSSSEGDVAGLGVDELGAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETF 346
BLAST of mRNA_Ecto-sp13_S_contig620.16919.1 vs. uniprot
Match: A0A7S3XZX8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZX8_HETAK) HSP 1 Score: 132 bits (332), Expect = 4.440e-30 Identity = 84/205 (40.98%), Postives = 122/205 (59.51%), Query Frame = 1
Query: 1363 ELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAET-SDVPEV---GRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQQTFQRLSAMLTDGTGKAPEHVLSKAVLKNKDQDLS-LSLTLVRDA-LGRPKYFLCSLL 1959
E KR++RN REQ+RS+ S+QID+LR LLQE G Q K NK +VLS V Y AQL +Q + L+ ER +W+AE + PE R P G D ++VF H + A+A V+GR ++ N +FE +G+ ++ +LTL +L AP +LQ+ F + M++ G EHVL LK + + L+L LVR P++F C +L
Sbjct: 24 EKKRKDRNMREQKRSVKISKQIDRLRALLQEAGAQVKPNKHAVLSGVVHYMAQLHKQAQALDLERRQWLAEAHAGAPEAEAKARPGPAGAPCDYRRVFQHMGLPAAVAAVDGRFVDCNAKFEEATGYSRRDVVRLTLFNLAAPHDLQRLFSVVGQMMSGRYGGGGEHVLEHVRLKGGTRARAKLALRLVRGGPANAPQFFHCVML 228
BLAST of mRNA_Ecto-sp13_S_contig620.16919.1 vs. uniprot
Match: A0A4D9CZ03_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZ03_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 2.080e-13 Identity = 70/242 (28.93%), Postives = 118/242 (48.76%), Query Frame = 1
Query: 1369 KRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKAN-KSSVLSEVASYTAQLQQQI-----------------------------EQLEEERARWMAETSDVPEVG-RQDPNGGT-IDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQQTFQRLSAMLTDGTGKAPEHVLSKAV--------------LKNKDQDLSLSLTLVRDALGRPKYFLCSL 1956
++Q+RNAREQ+RSL S+QI L+ LL+E G + K N K ++L V Y +L++++ E + + R ++ S V R+D + +F S LA+A+VEGR I++N++FE +G+ EL++LT +L AP ELQ TF ++ ML +G+ + S+ + L + Q+L ++++LV+ +F CSL
Sbjct: 28 RKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGREGGXXXXXXXXXXMDVGVGTSVEAVGQRNGRSESDLSVVTATSVREDREVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELERLTFFNLVAPEELQDTFAAVARMLNQPSGEEEDKEDSEMLRLTRRALPKVGIGGLGQQAQNLHITISLVKPQEDSMAFFQCSL 269
BLAST of mRNA_Ecto-sp13_S_contig620.16919.1 vs. uniprot
Match: A0A7S1BWH9_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BWH9_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 1.420e-11 Identity = 71/250 (28.40%), Postives = 112/250 (44.80%), Query Frame = 1
Query: 1363 ELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEE---------RARWMAETSDVPEVGRQDPNGGTIDCKQVFAHA----------SVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQQTFQRLSAMLTDGTGK--APEHVLSKAVL-KNKDQD---------------------------LSLSLTLVRDALGRPKYFLCSLLPN 1965
E +R +RN REQ+RS S+QI +L+ +L I K NK S+L A Y QLQ + L+ E +A M T P+ Q N +ID VF S A+A+A+++GR ++ N+QFE +SG+ EEL + TL + ++++ F+ + ML + + S VL KN+ D L +++T+ R G ++F C+L N
Sbjct: 119 EKRRYDRNLREQQRSYKISQQIKELKTVLSNSNIPFKPNKFSILLSTAVYIKQLQSRAMLLDSEHQKLLNSIGQASEMVTTGQSPDDLAQASNTNSIDADLVFVQGLQYSNIFYQCSAAIAVASLDGRFLDCNIQFEKVSGYTKEELTRETLFNFLTNDDMEEVFKVMGQMLKEDNNADFSARTFWSGVVLQKNRKVDVRIFVSHLCTIIKYCYSNTHVFFFYPKLQMNITMARAPDGTARFFNCALTSN 368
BLAST of mRNA_Ecto-sp13_S_contig620.16919.1 vs. uniprot
Match: W7TXM2_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXM2_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.650e-9 Identity = 38/124 (30.65%), Postives = 70/124 (56.45%), Query Frame = 1
Query: 1591 EVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQQTFQRLSAMLTDGTGKAPEHVLSKAVLKNKDQDLSLSLTLVRDALGRPKYFLCSLLP 1962
E G PN + D +F +AS+A+A+A+++G+ ++ N F +SG+ N E+ Q ++ LT P+E Q + + + ++ +H + +N+D +S+ LVR A G P +F C++LP
Sbjct: 292 EAGSWAPNKKSADYALMFQNASIAMAVASLDGKFVDCNSAFSIISGYSNGEVLQRSVFDLT-PAEDCQELMGIVGKMMESPAESAKHFWKRCCFENRDCHCFVSMWLVRKASGEPVFFQCAVLP 414
BLAST of mRNA_Ecto-sp13_S_contig620.16919.1 vs. uniprot
Match: A0A7S1XXW7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXW7_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.300e-5 Identity = 62/243 (25.51%), Postives = 106/243 (43.62%), Query Frame = 1
Query: 1369 KRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWM----------------------------AETSDVPEVGRQDP---------NGGTI-----DCKQVFAHASVALAMATVEGRLIESNLQFEAL----SGHRNEELKQLTLLSLTAPSELQQTFQRLSAMLTDGTGKAPEHVLSKAVLKNKDQDLSLSLTLVRDALGRPKYFLCSLL 1959
+RQERN REQ+RSL SR+ID+L ++L + G KANKSS+L E SY LQ + + E ER++++ A SD G ++P G D + F + A+A +G+++ N +F+ +G + TL L S+L F+ ++A L + + + +D+ ++++L+RD + + F +LL
Sbjct: 102 RRQERNHREQKRSLKISRKIDELHEILTDSGRMVKANKSSILREAFSYIMHLQGVLARKEYERSQFVNILTTNGASGISGIKDGFDDANFKASIAALMSDSDATGGKNPVDWAKLLSGEGAAAAAAQDDFARYFDATPIPCAVAGTDGQVLGMNTKFQNFVMPGAGASFDRKSYPTLFGLVETSQLCNVFKIIAAALRHDGDQLAYFEVQPCLQGEVRKDMVMTVSLIRDEMREARLFSVALL 344
BLAST of mRNA_Ecto-sp13_S_contig620.16919.1 vs. uniprot
Match: UPI000A0184ED (EAL domain-containing protein n=1 Tax=Nevskia soli TaxID=418856 RepID=UPI000A0184ED) HSP 1 Score: 59.3 bits (142), Expect = 4.390e-5 Identity = 31/111 (27.93%), Postives = 63/111 (56.76%), Query Frame = 1
Query: 1633 KQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQQTFQRLSAMLTDGTGKAPEHVLSKAVLKNKDQDL---SLSLTLVRDALGRPKYFLCSL 1956
+ F HAS+ +A+ +++GR ++ N A+ G+ EEL + +LT P +L + + ++ G+ +V+ K ++D+ + SLS+++VRD+ G+P YF+ +
Sbjct: 49 RSAFTHASIGMALVSLDGRWLQVNKSLSAMMGYSMEELLKTDFQTLTHPDDLPADLEYVKCLVA---GEIQSYVMEKRYF-HRDRHIICASLSVSMVRDSAGKPLYFISQI 155
BLAST of mRNA_Ecto-sp13_S_contig620.16919.1 vs. uniprot
Match: A0A0U2SYI1_9STRA (BHLH transcription factor 1 n=2 Tax=Microchloropsis salina TaxID=2511165 RepID=A0A0U2SYI1_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 5.390e-5 Identity = 32/119 (26.89%), Postives = 67/119 (56.30%), Query Frame = 1
Query: 1624 IDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQQTFQRLSAMLTDGT--GKAPEHVLSKAVLKNKD-----QDLSLSLTLVRDALGRPKYFLCSLL 1959
+D ++F + V +A+ +++GRL++ N++F ++G+ N++L +TL L AP L+Q F+ ++ +L+ K P + + A ++ ++ L+LVRD R + F C ++
Sbjct: 508 LDFSEIFRSSHVPMAVVSIDGRLLQCNVEFSRVTGYTNDKLAGVTLFGLAAPECLEQLFKSIARLLSTAALDEKNPAYFATAAARATPFSHPGYKEANILLSLVRDEEHRARAFHCCIV 626 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig620.16919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig620.16919.1 >prot_Ecto-sp13_S_contig620.16919.1 ID=prot_Ecto-sp13_S_contig620.16919.1|Name=mRNA_Ecto-sp13_S_contig620.16919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=729bp MRQPSLPPLTAQQLQLLQQQQQALHHQQQQVLHHQQQQVLQQQQQQHLLQback to top mRNA from alignment at Ecto-sp13_S_contig620:16146..22435- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig620.16919.1 ID=mRNA_Ecto-sp13_S_contig620.16919.1|Name=mRNA_Ecto-sp13_S_contig620.16919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6290bp|location=Sequence derived from alignment at Ecto-sp13_S_contig620:16146..22435- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig620:16146..22435- >mRNA_Ecto-sp13_S_contig620.16919.1 ID=mRNA_Ecto-sp13_S_contig620.16919.1|Name=mRNA_Ecto-sp13_S_contig620.16919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2187bp|location=Sequence derived from alignment at Ecto-sp13_S_contig620:16146..22435- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |