prot_Ecto-sp13_S_contig62.16917.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig62.16917.1
Unique Name	prot_Ecto-sp13_S_contig62.16917.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	957

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62.16917.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 986 bits (2550), Expect = 0.000e+0
Identity = 829/959 (86.44%), Postives = 831/959 (86.65%), Query Frame = 0

Query:    1 MSSSGGGEGRSRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSKPASSTPSTTEATAXXXXXXXXXXXXXXXXXXXXXXAAAGERDDGLVPGAGLLALQALAPAQKKSKADPKTPTAVPAPQXXXXXXPKDRAGXXXXXXXXXRSTGRGVKAAGGRDTGGKTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKPSGKGTGARQLSEEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXKAXXXXXAAEEQRARREAEXXXXXXXXXXXXXXXXXXXXXXXEVKRKAEEKKXXXXXXXXXXXXXXXXXXXXAERKAXXERKAAEXXXXXAAXXXXXXXXXXXXXXXXXXXXXXAQLEAVSQLDLLQKEERARRELREKHTPEALKASRDAHEANKPKLKSDLKKTTAFTKKVKALSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQRYAEFAEDLIPKLAAIFLSAPSGEE-REEKELLRRKRSNLRLLTELHASGVFDGSRLIVRIVRSLCGLEGKDGKRQRPGPGDAARRRDHQTVTAAPPPLRETDVTLLAGFVRAAGEDMVGVLQRKTAGMLKLAGEMGKLEREPVVDADVKGRLRSLVDGVFDALCSHLERGHEQLGRLEKKMEKDRLTNGTLTEEKERNLEESRKGYEALLGNVTSLASSLNRDMPQLPEHEAEEEGSGGISLWEGGVGGDGTGYTGPFEESEXXXXXXXXXXXXXXXXXXXXXXEGEGGKEEAEAEXXXDKTLVEEMKRLEVVAEEGEXXXXXXXXXXXXXXXXXXXXXXG-EGGEYMSRNSRLMLMLEDELPNCHNQERVDEFAKKFCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQAMKTIAPLLIEELRSHFR 957
            MSSSGGGEGRSR  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    TSKPASSTPSTTEAT XXXXXXXXXXXXXXXXXXXX   AAG+RDDGLVPG+GLLALQALAPAQKKSKADPKTPTA   PQXXXXXX K RAG    XXXXX    RG K AGGRDTGGKTAAT             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RKPSGKGTGARQLSEEEE                     XXXXXX  XXXXXAAEEQRARREAEXXXXXXXXXXXXXXXXXXXXXXXEVKRKAE   XXXXXXXXXXXXXXXXXXXXAERKAXX      XXXXX  XXXXXXXXXXXXXXXXXXXX  AQLEAVSQLDLLQKEERARRELREKHTPEALKASRDAHEANKPKLKSDLKKTTAFTKKVKALSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQRYAEFAEDLIPKLAA FLSAP GEE REEKELLRRKRSNLRLLTELHASGVFDGSRLIVRIVRSLCGLEGKDGKRQRPGPGDAARR DHQTVTAAPPPLRE DVTLLAGFVRAAGEDMVGVLQRKTAGMLKLAGEMGKLEREPVVDADVKGRLRSLVDGVFDALCSHLERGHEQLGRLEKKMEKDRLTNGTLTEEKERNLEESRKGYEALLGNVTSLASSLNRDMPQLPEHEAEEEGSGGISLWEGGVGGDGTGYTGPFEESE                      EGE         XX DKTLVEEMKRLEVVAEEGE             XXXXXXXXX  EGGEYMSRNSRLMLMLEDELPNCHNQERVDEFAKKFCYVNSKSARKKLVAALFNVPRQA DLLPMYARLVAILDQAMKTIAPLLIEELRSHFR
Sbjct:    1 MSSSGGGEGRSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSNRTSKPASSTPSTTEATXXXXXXXXXXXXXXXXXXXXXA-TAAGKRDDGLVPGSGLLALQALAPAQKKSKADPKTPTAAAVPQXXXXXXXKGRAGGSASXXXXXXXXXRGAKGAGGRDTGGKTAATTATQQERSGKALGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RKPSGKGTGARQLSEEEEGERSREAAKQLAAQKEARKRAXXXXXXXXXXXXXAAEEQRARREAEXXXXXXXXXXXXXXXXXXXXXXXEVKRKAEXXXXXXXXXXXXXXXXXXXXXXXAERKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEAQLEAVSQLDLLQKEERARRELREKHTPEALKASRDAHEANKPKLKSDLKKTTAFTKKVKALSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQRYAEFAEDLIPKLAAPFLSAPGGEEEREEKELLRRKRSNLRLLTELHASGVFDGSRLIVRIVRSLCGLEGKDGKRQRPGPGDAARRPDHQTVTAAPPPLREADVTLLAGFVRAAGEDMVGVLQRKTAGMLKLAGEMGKLEREPVVDADVKGRLRSLVDGVFDALCSHLERGHEQLGRLEKKMEKDRLTNGTLTEEKERNLEESRKGYEALLGNVTSLASSLNRDMPQLPEHEAEEEGSGGISLWEGGVGGDGTGYTGPFEESEREEERRLQKERSAGDA------EGEXXXXXXXXXXXDDKTLVEEMKRLEVVAEEGEEEGAGTDDEEEEGXXXXXXXXXXXEGGEYMSRNSRLMLMLEDELPNCHNQERVDEFAKKFCYVNSKSARKKLVAALFNVPRQARDLLPMYARLVAILDQAMKTIAPLLIEELRSHFR 951

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62.16917.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)

HSP 1 Score: 371 bits (952), Expect = 1.380e-107
Identity = 240/556 (43.17%), Postives = 314/556 (56.47%), Query Frame = 0

Query:  424 QKEERARRELREKHTPEALKASRDAHEANKPKLKSDLKKTTAFTKKVKALSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQRYAEFAEDLIPKLAAIFLSAPSGEEREEKELLRRKRSNLRLLTELHASGVFDGSRLIVRIVRSLCGLEGKDGKRQRPGPGDAARRRDHQTVTAAPPPLRETDVTLLAGFVRAAGEDMVGVLQRKTAGMLKLAGEMGKLEREPVVDADVKGRLRSLVDGVFDALCSHLERGHEQLGRLEKKMEKDRLTNGTLTEEKERNLEESRKGYEALLGNVTSLASSLNRDMPQLPEHEAEEEGSGGISLWEGGVGGDGTGYTGPFEESEXXXXXXXXXXXXXXXXXXXXXXEGEGGKE----------------------EAEAEXXXDKTLVEEMKRLEVVAEEGEXXXXXXXXXXXXXXXXXXXXXXGEGGEYMSRNSRLMLMLEDELPNCHNQERVDEFAKKFCYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQAMKTIAPLLIEELRSHFR 957
            Q+++  RR LR ++TP A+ ASR +H ANK KLKSDLKKT+ FT KV+ L+E QR+ +TKD+ETLNL+ YVSE+VDAVAE +LK +DVSVAVHLCC+MHQRYA F EDLIPKL A F   P+ +   +K+ LR++RSNLRLLTELH  GVFDGS+ ++ ++R L G                  R  H TV AAP  LR  DV+L+  F + AG+++ G++ R++  +     +    ER  VV A+ +     ++ GV   L  HL   H+ L +LE++MEKDRL  G+LTEEKERNLE S   Y  LL NV +L+ +L+ DMP LPE + EEE  GG+ LW  GVG  G G  GP+++ E                        E  +E                      +A A    D  L  E+++L V                             E G            L +ELP C N+ER D FA KFC+ NSKSAR+KLV ALF  PRQ+LDLLP YARLVA LDQ ++ IAP L ++L+  FR
Sbjct:    8 QRKDEERRALRARNTPGAVAASRASHNANKSKLKSDLKKTSTFTSKVRTLTEAQRATITKDIETLNLSHYVSEIVDAVAEAKLKTSDVSVAVHLCCMMHQRYAGFTEDLIPKLLAPFREDPAED---DKDALRKRRSNLRLLTELHLCGVFDGSQWLLNVLRRLAGERRXXXXXXXXXXXXXXHRSAHATVEAAPADLRPNDVSLVVAFAKHAGQELAGIVPRRSGRLAVF--QRSSQERLRVVSAEGQALFLGVLQGVLRRLRGHLVTAHKALQKLERRMEKDRLLCGSLTEEKERNLELSAGAYNKLLSNVVALSDALDEDMPDLPEDKEEEE-LGGVELWSSGVG-LGEGDLGPWDDLETKSFYEDLADLLTAVPPSQLGLTEEQWQELRAQQDARESRQRSGDGXXXXXDAAAGAEEDADLAAELQKLSVQ----------------------------ESGXXXXXXXXXXX-LREELPACFNRERTDAFAIKFCHHNSKSARRKLVRALFEAPRQSLDLLPQYARLVATLDQVLRDIAPALTDDLQGEFR 527

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62.16917.1 vs. uniprot
Match: C3YPG4_BRAFL (Uncharacterized protein (Fragment) n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YPG4_BRAFL)

HSP 1 Score: 207 bits (526), Expect = 3.150e-51
Identity = 158/522 (30.27%), Postives = 247/522 (47.32%), Query Frame = 0

Query:  455 KLKSDLKKTTAFTKKVKALSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQRYAEFAEDLIPKLAAIFLSAPSGEEREEKELLRRKRSNLRLLTELHASGVF---DGSRLIVRIVRSLCGLEGKDGKRQRPGPGDAARRRDHQTVTAAPPPLRETDVTLLAGFVRAAGEDMVGVLQRKTAGMLKLAGEMGKLEREPVVDADVKGRLRSLVDGVFDALCSHLERGHEQLGRLEKKMEKDRLTNGTLTEEKERNLEESRKGYEALLGNVTSLASSLNRDMPQLPEHEAEEEGSGGISLWEGGVGGDGTGYTGPFEESEXXXXXXXXXXXXXXXXXXXXXXEGE--GGKEEAEAEXXXDKTLVEEMKRLEVVA-------------EEGEXXXXXXXXXXXXXXXXXXXXXXGEGGEYMSRNSRLMLMLEDELPNCHNQERVDEFAKKFCY-VNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQAMKTIAPLLIEELRSHFR 957
            KL S LKK TAF KK+K ++E QR +LTK+  +LNL +Y+ E V++  E +LK +DV+ AVHLC   HQRYAEF   L+      F +    +E ++KE   + R ++RL+ EL  +GVF   +G  L+   +++L      DG ++                          ++T+L+ F R  GED  G++ RK   +      +  L +  V   +++G+ R L+   F +L  HL++ H+ L        +   T G L+EE++++ E+++  Y+ LL N ++LA  L+ DMP LPE + +EE  G + ++    GGDG        E E                      + E    ++EAEAE    +  VE ++ +EVV               + E                      G  G   S    L+     +LPNC N+E +D    +FC  +N+K+ R+KLV ALF V R  +DLLP Y+RLVA L      +A  L+  L+  F+
Sbjct:   11 KLDSSLKKNTAFVKKLKTITEQQRESLTKEFNSLNLTKYIGEAVNSFVEAKLKMSDVNCAVHLCSKFHQRYAEFTPQLLQAWNKSFQARRDDKEEKKKEKGDKLRVDIRLVAELTVAGVFTDKEGLPLVASQLKALI-----DGDKE-----------------------AHNNLTILSSFCRHCGEDYAGLVPRKNRSLADKYNVI--LPKSEVFPCEIQGKCRQLLKDYFTSLVKHLQKDHKALQNQAWNNRRTLQTKGELSEERQKSFEDAQAAYQKLLMNASTLADLLDEDMPDLPEDDFKEEEEGNVDIFLAIKGGDGEIGENTLWEDEETRSFYENLPNLKEFLPAILFKDSEKKSNEQEAEAEVDTPEDTVEALEEVEVVXXXXXXXXXXXXXXSQAEMSVEDIEKEILGSVEDVDDDAEGASG---SSTKMLLEGFLQQLPNCVNREFIDNAGLEFCMNMNNKTNRRKLVRALFTVHRTRIDLLPFYSRLVATLQPCTPDVADDLVAMLKGDFK 499

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62.16917.1 vs. uniprot
Match: A0A6P4ZV22_BRABE (regulator of nonsense transcripts 2-like n=2 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZV22_BRABE)

HSP 1 Score: 202 bits (515), Expect = 1.150e-49
Identity = 180/528 (34.09%), Postives = 268/528 (50.76%), Query Frame = 0

Query:  455 KLKSDLKKTTAFTKKVKALSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQRYAEFAEDLIPKLAAIFLSAPSGEEREEKELLRRKRSNLRLLTELHASGVF---DGSRLIVRIVRSLCGLEGKDGKRQRPGPGDAARRRDHQTVTAAPPPLRETDVTLLAGFVRAAGEDMVGVLQRKTAGMLKLAGEMGKLEREPVVDADVKGRLRSLVDGVFDALCSHLERGHEQLGRLEKKMEKDRLTNGTLTEEKERNLEESRKGYEALLGNVTSLASSLNRDMPQLPEHEAEEEGSGGISLWEGGVGGDGT-GYTGPFEESEXXXXXXXXXXXXXXXXXXXXXXEGEGGKE-EAEAEXXXD--KTLVEEMKRLEVVAEEGEXXXXXXXXXXXXXXXXXXXXXX---------------GEGGEYMSRNSRLMLM--LEDELPNCHNQERVDEFAKKFCY-VNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQAMKTIAPLLIEELRSHFR 957
            KL S LKK TAF KK+K ++E QR +LTK+  +LNL +Y+ E V++  E +LK +DVS AVHLC L HQRYAEF   L+      F +    +E ++KE   + R +LR + EL  +GVF   +G  L+   +++L      DG ++                          ++T+L+ F R  GED  G++ RK   +      +  L +  V  ++++G+ R L+   F +L  HL++ H+ L        +   T G L+E+++++ E+++  Y+ LL N ++LA  L+ DMP LPE + +EE  G + ++    GG+G  G    +E+ E                        +  KE EAEA+   D  + L EEM  LE+ AE  E  XXXXXXXXXXXXXX                      E  E  S +S  ML+     +LPNC N+E +D    +FC  +N+K+ R+KLV ALF V R  +DLLP Y+RLVA L      +A  L+  L+  FR
Sbjct:  290 KLDSSLKKNTAFVKKLKTITEQQRESLTKEFNSLNLTKYIGEAVNSFVEAKLKMSDVSCAVHLCSLFHQRYAEFTPQLLQTWNKSFQARRDDKEEKKKEKGDKLRVDLRQVAELTVAGVFTDKEGLPLVASQLKALI-----DGDKE-----------------------VHNNLTVLSSFCRHCGEDYAGLVPRKNRSLADKYNVI--LPKSEVFPSEIQGKCRQLLKDYFTSLVKHLQKDHKALQNQAWNNRRTLQTKGELSEDRQKSFEDAQAAYQKLLMNASTLADLLDEDMPDLPEDDFKEEEEGNVDIFLAIKGGEGEIGENTLWEDEETRSFYENLPNLKEFLPAILFKDSEKKSKEQEAEADTPEDTVEALEEEMSNLEL-AEAVEVAXXXXXXXXXXXXXXAQAEMSVEDIEKEILGTVEDVDEDTEGASGSSTKMLLEGFLQQLPNCVNREFIDNAGLEFCMNMNNKTNRRKLVRALFTVHRTRIDLLPFYSRLVATLQPCTPDVADDLVAMLKGDFR 786

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62.16917.1 vs. uniprot
Match: A0A4W5NMR8_9TELE (UPF2 regulator of nonsense mediated mRNA decay n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5NMR8_9TELE)

HSP 1 Score: 199 bits (507), Expect = 9.030e-49
Identity = 163/517 (31.53%), Postives = 250/517 (48.36%), Query Frame = 0

Query:  455 KLKSDLKKTTAFTKKVKALSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQRYAEFAEDLIPKLAAIFLSAPSGEEREEKELLRRKRSNLRLLTELHASGVF---DGSRLIVRIVRSLCGLEGKDGKRQRPGPGDAARRRDHQTVTAAPPPLRETDVTLLAGFVRAAGEDMVGVLQRKTAGMLKLAGEMGKLEREP--VVDADVKGRLRSLVDGVFDALCSHLERGHEQLGRLEKKMEKDRLTNGTLTEEKERNLEESRKGYEALLGNVTSLASSLNRDMPQLP-EHEAEEEGSGGISLWEGGVGGDGTGYTGPFEESEXXXXXXXXXXXXXXXXXXXXXXEGEGGKEEAEAEXXXDKTLVEEMKRLEV----VAEEGEXXXXXXXXXXXXXXXXXXXXXXGEGGEYMSRNSRLMLMLE---DELPNCHNQERVDEFAKKFCY-VNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQAMKTIAPLLIEELRSHFR 957
            +L S LKK TAF KK++ L+E QR AL+ D  +LNL++Y+ E V +V E +LK +DVS AVHLC L HQRYAEFA  L+      F       + E+   + + R++LR + EL   G+F   +G  LI   ++S+ G                    D +T          T V+++  F +  G+D+ G++ RK    +K A E   L   P  +++ + +   ++L+   F +L  HL++ H +L  +E++  +   + G L+E++ +  EE    Y+ LL N  SLA  L+ +MP+LP +   +EE   GI ++  G  G+     G   E E                      + E GK++ EA    D     E   LE+    +A++                         +  E  S  S L L+++    +LPNC N++ +D+ A  FC  +N+KS R+KLV ALF VPRQ LDLLP Y+RLVA L   M  +A  L   L+  FR
Sbjct:  164 RLDSSLKKNTAFVKKLRTLTEQQREALSNDFGSLNLSKYIGEAVGSVVEAKLKISDVSCAVHLCSLFHQRYAEFAPLLLQAWKRHF----EARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKSIIGT-------------------DRET---------HTHVSVVISFCKHCGDDIAGLVPRK----VKAAREKFGLAFPPSEIINTEKQQPFQNLLREYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADFLDENMPELPLDKTVQEEHGPGIDIFTPGKPGE-YDLEGGIWEDEDARNFYENMVDLKAFVPAILFKDNEKGKDKEEAAEAKDAAATTEELELELEALDIADDPLELDGPDEAENEAELAKKLLDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVADDLCSILKGDFR 643

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62.16917.1 vs. uniprot
Match: UPI001130AF8C (regulator of nonsense transcripts 2-like isoform X6 n=1 Tax=Oncorhynchus nerka TaxID=8023 RepID=UPI001130AF8C)

HSP 1 Score: 198 bits (503), Expect = 2.880e-48
Identity = 162/517 (31.33%), Postives = 249/517 (48.16%), Query Frame = 0

Query:  455 KLKSDLKKTTAFTKKVKALSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQRYAEFAEDLIPKLAAIFLSAPSGEEREEKELLRRKRSNLRLLTELHASGVF---DGSRLIVRIVRSLCGLEGKDGKRQRPGPGDAARRRDHQTVTAAPPPLRETDVTLLAGFVRAAGEDMVGVLQRKTAGMLKLAGEMGKLEREP--VVDADVKGRLRSLVDGVFDALCSHLERGHEQLGRLEKKMEKDRLTNGTLTEEKERNLEESRKGYEALLGNVTSLASSLNRDMPQLP-EHEAEEEGSGGISLWEGGVGGDGTGYTGPFEESEXXXXXXXXXXXXXXXXXXXXXXEGEGGKEEAEAEXXXDKTLVEEMKRLEV----VAEEGEXXXXXXXXXXXXXXXXXXXXXXGEGGEYMSRNSRLMLMLE---DELPNCHNQERVDEFAKKFCY-VNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQAMKTIAPLLIEELRSHFR 957
            +L S LKK TAF KK++ L+E QR AL+ D  +LNL++Y+ E V +V E +LK +DV  AVHLC L HQRYAEFA  L+      F       + E+   + + R++LR + EL   G+F   +G  LI   ++S+ G                    D +T          T V+++  F +  G+D+ G++ RK    +K A E   L   P  +++ + +   ++L+   F +L  HL++ H +L  +E++  +   + G L+E++ +  EE    Y+ LL N  SLA  L+ +MP+LP +   +EE   GI ++  G  G+     G   E E                      + E GK++ EA    D     E   LE+    +A++                         +  E  S  S L L+++    +LPNC N++ +D+ A  FC  +N+KS R+KLV ALF VPRQ LDLLP Y+RLVA L   M  +A  L   L+  FR
Sbjct:  164 RLDSSLKKNTAFVKKLRTLTEQQREALSNDFGSLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPLLLQAWKRHF----EARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKSIIGT-------------------DRET---------HTHVSVVISFCKHCGDDIAGLVPRK----VKAAREKFGLAFPPSEIINTEKQQPFQNLLREYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADFLDENMPELPLDKTVQEEHGPGIDIFTPGKPGE-YDLEGGIWEDEDARNFYENMVDLKAFVPAILFKDNEKGKDKEEAAEAKDAAATTEELELELEALDIADDPLELDGPDEAENEAELAKKLLDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVADDLCSILKGDFR 643

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62.16917.1 vs. uniprot
Match: UPI001878107F (regulator of nonsense transcripts 2 isoform X6 n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=UPI001878107F)

HSP 1 Score: 198 bits (503), Expect = 2.880e-48
Identity = 162/517 (31.33%), Postives = 249/517 (48.16%), Query Frame = 0

Query:  455 KLKSDLKKTTAFTKKVKALSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQRYAEFAEDLIPKLAAIFLSAPSGEEREEKELLRRKRSNLRLLTELHASGVF---DGSRLIVRIVRSLCGLEGKDGKRQRPGPGDAARRRDHQTVTAAPPPLRETDVTLLAGFVRAAGEDMVGVLQRKTAGMLKLAGEMGKLEREP--VVDADVKGRLRSLVDGVFDALCSHLERGHEQLGRLEKKMEKDRLTNGTLTEEKERNLEESRKGYEALLGNVTSLASSLNRDMPQLP-EHEAEEEGSGGISLWEGGVGGDGTGYTGPFEESEXXXXXXXXXXXXXXXXXXXXXXEGEGGKEEAEAEXXXDKTLVEEMKRLEV----VAEEGEXXXXXXXXXXXXXXXXXXXXXXGEGGEYMSRNSRLMLMLE---DELPNCHNQERVDEFAKKFCY-VNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQAMKTIAPLLIEELRSHFR 957
            +L S LKK TAF KK++ L+E QR AL+ D  +LNL++Y+ E V +V E +LK +DV  AVHLC L HQRYAEFA  L+      F       + E+   + + R++LR + EL   G+F   +G  LI   ++S+ G                    D +T          T V+++  F +  G+D+ G++ RK    +K A E   L   P  +++ + +   ++L+   F +L  HL++ H +L  +E++  +   + G L+E++ +  EE    Y+ LL N  SLA  L+ +MP+LP +   +EE   GI ++  G  G+     G   E E                      + E GK++ EA    D     E   LE+    +A++                         +  E  S  S L L+++    +LPNC N++ +D+ A  FC  +N+KS R+KLV ALF VPRQ LDLLP Y+RLVA L   M  +A  L   L+  FR
Sbjct:  164 RLDSSLKKNTAFVKKLRTLTEQQREALSNDFGSLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPLLLQAWKRHF----EARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKSIIGT-------------------DRET---------HTHVSVVISFCKHCGDDIAGLVPRK----VKAAQEKFGLAFPPSEIINTEKQQPFQNLLREYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADFLDENMPELPLDKTVQEEHGPGIDIFTPGKPGE-YDLEGGIWEDEDARNFYENMVDLKAFVPAILFKDNEKGKDKEEAAEAKDAAATTEELELELESLDIADDPLELDGPDEAENEAELAKKLLDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVADDLCSILKGDFR 643

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62.16917.1 vs. uniprot
Match: UPI001C3D3F3A (regulator of nonsense transcripts 2-like isoform X6 n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=UPI001C3D3F3A)

HSP 1 Score: 198 bits (503), Expect = 3.030e-48
Identity = 162/517 (31.33%), Postives = 249/517 (48.16%), Query Frame = 0

Query:  455 KLKSDLKKTTAFTKKVKALSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQRYAEFAEDLIPKLAAIFLSAPSGEEREEKELLRRKRSNLRLLTELHASGVF---DGSRLIVRIVRSLCGLEGKDGKRQRPGPGDAARRRDHQTVTAAPPPLRETDVTLLAGFVRAAGEDMVGVLQRKTAGMLKLAGEMGKLEREP--VVDADVKGRLRSLVDGVFDALCSHLERGHEQLGRLEKKMEKDRLTNGTLTEEKERNLEESRKGYEALLGNVTSLASSLNRDMPQLP-EHEAEEEGSGGISLWEGGVGGDGTGYTGPFEESEXXXXXXXXXXXXXXXXXXXXXXEGEGGKEEAEAEXXXDKTLVEEMKRLEV----VAEEGEXXXXXXXXXXXXXXXXXXXXXXGEGGEYMSRNSRLMLMLE---DELPNCHNQERVDEFAKKFCY-VNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQAMKTIAPLLIEELRSHFR 957
            +L S LKK TAF KK++ L+E QR AL+ D  +LNL++Y+ E V +V E +LK +DV  AVHLC L HQRYAEFA  L+      F       + E+   + + R++LR + EL   G+F   +G  LI   ++S+ G                    D +T          T V+++  F +  G+D+ G++ RK    +K A E   L   P  +++ + +   ++L+   F +L  HL++ H +L  +E++  +   + G L+E++ +  EE    Y+ LL N  SLA  L+ +MP+LP +   +EE   GI ++  G  G+     G   E E                      + E GK++ EA    D     E   LE+    +A++                         +  E  S  S L L+++    +LPNC N++ +D+ A  FC  +N+KS R+KLV ALF VPRQ LDLLP Y+RLVA L   M  +A  L   L+  FR
Sbjct:  164 RLDSSLKKNTAFVKKLRTLTEQQREALSNDFGSLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPLLLQAWKRHF----EARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKSIIGT-------------------DRET---------HTHVSVVISFCKHCGDDIAGLVPRK----VKAAREKFGLAFPPSEIINTEKQQPFQNLLREYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADFLDENMPELPLDKTVQEEHGPGIDIFTPGKPGE-YDLEGGIWEDEDARNFYENMVDLKAFVPAILFKDNEKGKDKEEAAEAKDAAATTEELELELEALDIADDPLELDGPDEAENEAELAKKLLDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVADDLCSILKGDFR 643

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62.16917.1 vs. uniprot
Match: A0A4W5MTL3_9TELE (UPF2 regulator of nonsense mediated mRNA decay n=2 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5MTL3_9TELE)

HSP 1 Score: 197 bits (500), Expect = 4.070e-48
Identity = 162/517 (31.33%), Postives = 249/517 (48.16%), Query Frame = 0

Query:  455 KLKSDLKKTTAFTKKVKALSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQRYAEFAEDLIPKLAAIFLSAPSGEEREEKELLRRKRSNLRLLTELHASGVF---DGSRLIVRIVRSLCGLEGKDGKRQRPGPGDAARRRDHQTVTAAPPPLRETDVTLLAGFVRAAGEDMVGVLQRKTAGMLKLAGEMGKLEREP--VVDADVKGRLRSLVDGVFDALCSHLERGHEQLGRLEKKMEKDRLTNGTLTEEKERNLEESRKGYEALLGNVTSLASSLNRDMPQLP-EHEAEEEGSGGISLWEGGVGGDGTGYTGPFEESEXXXXXXXXXXXXXXXXXXXXXXEGEGGKEEAEAEXXXDKTLVEEMKRLEV----VAEEGEXXXXXXXXXXXXXXXXXXXXXXGEGGEYMSRNSRLMLMLE---DELPNCHNQERVDEFAKKFCY-VNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQAMKTIAPLLIEELRSHFR 957
            +L S LKK TAF KK++ L+E QR AL+ D  +LNL++Y+ E V +V E +LK +DV  AVHLC L HQRYAEFA  L+      F       + E+   + + R++LR + EL   G+F   +G  LI   ++S+ G                    D +T          T V+++  F +  G+D+ G++ RK    +K A E   L   P  +++ + +   ++L+   F +L  HL++ H +L  +E++  +   + G L+E++ +  EE    Y+ LL N  SLA  L+ +MP+LP +   +EE   GI ++  G  G+     G   E E                      + E GK++ EA    D     E   LE+    +A++                         +  E  S  S L L+++    +LPNC N++ +D+ A  FC  +N+KS R+KLV ALF VPRQ LDLLP Y+RLVA L   M  +A  L   L+  FR
Sbjct:  164 RLDSSLKKNTAFVKKLRTLTEQQRDALSNDFGSLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPLLLQAWKRHF----EARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKSIIGT-------------------DRET---------HTHVSVVISFCKHCGDDIAGLVPRK----VKAAREKFGLTFPPSEIINTEKQQPFQNLLREYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQHEEFATSYQKLLANTQSLADFLDENMPELPLDKTVQEEHGPGIDIFTPGKPGE-YDLEGGIWEDEDARNFYENMVDLKAFVPAILFKDNEKGKDKEEAAEAKDVAATTEELELELEALDIADDPLELDGSDEAENEAELAKKLLDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVADDLCSILKGDFR 643

[Close]

BLAST of mRNA_Ecto-sp13_S_contig62.16917.1 vs. uniprot
Match: UPI00147751D2 (regulator of nonsense transcripts 2 isoform X6 n=1 Tax=Esox lucius TaxID=8010 RepID=UPI00147751D2)

HSP 1 Score: 197 bits (500), Expect = 7.110e-48
Identity = 161/519 (31.02%), Postives = 250/519 (48.17%), Query Frame = 0

Query:  455 KLKSDLKKTTAFTKKVKALSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQRYAEFAEDLIPKLAAIFLSAPSGEEREEKELLRRKRSNLRLLTELHASGVF---DGSRLIVRIVRSLCGLEGKDGKRQRPGPGDAARRRDHQTVTAAPPPLRETDVTLLAGFVRAAGEDMVGVLQRKTAGMLKLAGEMGKLEREP--VVDADVKGRLRSLVDGVFDALCSHLERGHEQLGRLEKKMEKDRLTNGTLTEEKERNLEESRKGYEALLGNVTSLASSLNRDMPQLPEHEAEEEGSG-GISLWEGGVGGDGTGYTGPFEESEXXXXXXXXXXXXXXXXXXXXXXEGEGGKEEAEAEXXXDKTLVEEMKRLEV------VAEEGEXXXXXXXXXXXXXXXXXXXXXXGEGGEYMSRNSRLMLMLE---DELPNCHNQERVDEFAKKFCY-VNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQAMKTIAPLLIEELRSHFR 957
            +L S LKK TAF KK++ L+E QR AL+ D  +LNL++Y+ E V +V E +LK +DV  AVHLC L HQRYAEFA  L+      F       + E+   + + R++LR + EL   G+F   +G  LI   ++S+ G                    D +T          T V+++  F +  G+D+ G++ R+    +K A E   L   P  +++ + +   ++L+   F +L  HL++ H +L  +E++  +   + G L+E++ +  EE    Y+ LL N  SLA  L+ +MP+LP+ +  +E  G GI ++  G  G+     G   E E                      + E GKE+ EA     K      + LE+      +A++                         +  E  S  S L L+++    +LPNC N++ +D+ A  FC  +N+KS R+KLV ALF VPRQ LDLLP Y+RLVA L   M  +A  L   L+  FR
Sbjct:  166 RLDSSLKKNTAFVKKLRTLTEQQRDALSNDFSSLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPLLLQAWKRHF----EARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKSIIGT-------------------DRET---------HTHVSVVISFCKHCGDDIAGLVPRR----VKAAREKFGLTFPPSEIINTEKQQPFQNLLREYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADLLDENMPELPQDKTVQEEHGPGIDIFTPGKPGE-YDLEGGIWEDEDARNFYENMVDLKAFVPAILFKDNEKGKEKEEAAAKEAKDAAATTEELELELEALDIADDPLEMDGPDEAENEAELAKKLLDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSILKGDFR 647

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig62.16917.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig62.16917.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LEF3_ECTSI	0.000e+0	86.44	Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID...	[more]
A0A835YRH9_9STRA	1.380e-107	43.17	Armadillo-type protein n=1 Tax=Tribonema minus Tax...	[more]
C3YPG4_BRAFL	3.150e-51	30.27	Uncharacterized protein (Fragment) n=2 Tax=Branchi...	[more]
A0A6P4ZV22_BRABE	1.150e-49	34.09	regulator of nonsense transcripts 2-like n=2 Tax=B...	[more]
A0A4W5NMR8_9TELE	9.030e-49	31.53	UPF2 regulator of nonsense mediated mRNA decay n=1...	[more]
UPI001130AF8C	2.880e-48	31.33	regulator of nonsense transcripts 2-like isoform X...	[more]
UPI001878107F	2.880e-48	31.33	regulator of nonsense transcripts 2 isoform X6 n=1...	[more]
UPI001C3D3F3A	3.030e-48	31.33	regulator of nonsense transcripts 2-like isoform X...	[more]
A0A4W5MTL3_9TELE	4.070e-48	31.33	UPF2 regulator of nonsense mediated mRNA decay n=2...	[more]
UPI00147751D2	7.110e-48	31.02	regulator of nonsense transcripts 2 isoform X6 n=1...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 813..836
None	No IPR available	COILS	Coil	Coil	coord: 274..436
None	No IPR available	PANTHER	PTHR12839:SF7	REGULATOR OF NONSENSE TRANSCRIPTS 2	coord: 421..957
IPR016021	MIF4G-like domain superfamily	GENE3D	1.25.40.180		coord: 407..751 e-value: 2.1E-72 score: 246.0
IPR016021	MIF4G-like domain superfamily	GENE3D	1.25.40.180		coord: 845..957 e-value: 1.3E-7 score: 32.9
IPR039762	Nonsense-mediated mRNA decay protein Nmd2/UPF2	PANTHER	PTHR12839	NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2	coord: 421..957
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 883..957
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 457..640

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig62	contig	Ecto-sp13_S_contig62:34191..45106 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig62.16917.1	mRNA_Ecto-sp13_S_contig62.16917.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig62 34191..45106 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig62.16917.1 ID=prot_Ecto-sp13_S_contig62.16917.1|Name=mRNA_Ecto-sp13_S_contig62.16917.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=957bp
MSSSGGGEGRSRGGGKGRGGGGGRGGGGGEGASAAGSSSSRGRGSKSSRG
SRSNRTSKPASSTPSTTEATAAAATARPPPPPPPQSGTATADAAAAGERD
DGLVPGAGLLALQALAPAQKKSKADPKTPTAVPAPQPSAAPTPKDRAGGS
ASGGGGSRSTGRGVKAAGGRDTGGKTAATTATQQERSGKALGGANSTAAG
RERAAAASTTTSGRRNFAAAAAAAAKGTLSSSARGGKPEKDGATSGGRGG
GGRKPSGKGTGARQLSEEEERERSREAAKQLAAQKEARKKAEEERRRKAE
EDRKAAEEQRARREAEEKERKLKAEAEARRKDIEDKKAAEVKRKAEEKKR
KAEEARRKAADEARKAKEEAERKAREERKAAERAEREAAKAAEEERRQKE
EEQERVRREFEAQLEAVSQLDLLQKEERARRELREKHTPEALKASRDAHE
ANKPKLKSDLKKTTAFTKKVKALSEDQRSALTKDVETLNLNRYVSEVVDA
VAENRLKNADVSVAVHLCCLMHQRYAEFAEDLIPKLAAIFLSAPSGEERE
EKELLRRKRSNLRLLTELHASGVFDGSRLIVRIVRSLCGLEGKDGKRQRP
GPGDAARRRDHQTVTAAPPPLRETDVTLLAGFVRAAGEDMVGVLQRKTAG
MLKLAGEMGKLEREPVVDADVKGRLRSLVDGVFDALCSHLERGHEQLGRL
EKKMEKDRLTNGTLTEEKERNLEESRKGYEALLGNVTSLASSLNRDMPQL
PEHEAEEEGSGGISLWEGGVGGDGTGYTGPFEESEREEERRLQKERSAAD
AGDAGDAEGEGGKEEAEAEEEEDKTLVEEMKRLEVVAEEGEEEGAGTDDE
EEEGEEEEEEEEEGEGGEYMSRNSRLMLMLEDELPNCHNQERVDEFAKKF
CYVNSKSARKKLVAALFNVPRQALDLLPMYARLVAILDQAMKTIAPLLIE
ELRSHFR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR016021	MIF4-like_sf
IPR039762	Nmd2/UPF2
IPR016024	ARM-type_fold