mRNA_Ecto-sp13_S_contig62.16914.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62.16914.1
Unique NamemRNA_Ecto-sp13_S_contig62.16914.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig62.16914.1 vs. uniprot
Match: A0A6H5KWJ9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWJ9_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 5.270e-45
Identity = 126/334 (37.72%), Postives = 172/334 (51.50%), Query Frame = 1 
Query:   85 FESLRTLGSRYKGRSKKSEMSTIEKDHAHLSKEVYENP-------------DSRKMILRAYIHRRDEIPGEG--TRPSVPLNGERWAVYGAPDEPRFVLAFRGTNITSRDDRTHGMNLIDTPIGKHKYIMDAAAWSLQVMLFLASQRRDGTC----------LKFSLTGHSLGGTVAMGVLLLLHDVPGTARRLAAGEEIFQDVAGLPDYETYAREFLGPWNVAKERMTWATSPYEIVGGDIFNPGAWP-TQKDVAGGVAIAGAAMVSAPMAAAATAFAFASSIPGQSS--------ERRDDRDVNSIDSLITTHHILGDPLSLNFGLGKEKSY 984
             E++ TL  R    S   +M+  EK  A LS EVY+ P             D  +     Y   R EIP       P+  LN  RWAV+ AP++  +VLAFRGT    R D  + + L+     +HKY+++A  W+L+V+LFL+ Q  +G            L+FS+TGHSLGGTVAMGV++LLHD+P TARR              P+   Y ++ LG WN  +   + A +PYE+VGG IFNPGAWP     VAGG A+AG  +      A A A A   ++   S             +R  + +D  +TTHHI+GD +S  F LG EK+Y
Sbjct:   20 IETVLTLPRRLVRTSHLEDMTDEEKAFACLSSEVYKKPGNDDXXXXXNPASDEHRGARCGYTLLRGEIPAAAGDDGPAASLNDTRWAVFRAPNQVDYVLAFRGT--ADRRDALNDVLLVHGDFDQHKYMLNATVWALRVILFLSKQHDNGXXXXXXXXXXXGLRFSVTGHSLGGTVAMGVMVLLHDIPTTARR-------------RPNDTRYQQQVLGAWNAERANWSGAAAPYELVGGHIFNPGAWPGLVGPVAGGSAVAGFWLTGGFAVAGAAATAAMCAVTVGSGCVLAIYLYRSHTERLSDPVDKRVTTHHIIGDVVSGFFRLGTEKNY 338
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BLAST of mRNA_Ecto-sp13_S_contig62.16914.1 vs. uniprot
Match: D7FQN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN2_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 8.830e-33
Identity = 105/318 (33.02%), Postives = 154/318 (48.43%), Query Frame = 1 
Query:  127 SKKSEMSTIEKDHAHLSKEVYENPDSRKMILRAYIHRRDEIP-----GEGTRPSVPLNGERWAVYGAPDEPRFVLAFRGTNITSRDDRTHGMNLIDTPIGKHKYIMDAAAWSLQVMLFLASQRR-------------DGTCLKFSLTGHSLGGTVAMGVLLLLHDVPGTARRLAAGEEIFQDVAGLPDYETYAREFLGPWNVAKERMTWATSPYEIVGGDIFNPGAWPTQKDVAGGVAIAGAAMVSAPMAAAATAFAFASSIPGQSSERRDDRDVNSIDSLITTHHILGDPLSLNFGLGKEKSYGTSKMFKHNINNFL 1026
            S+ S ++  ++D AH     Y NPD R   LR Y   + ++P      E    + PLN +RW VY  P+     L FRGT    + D  +  +L+   +  HK +MD+AA++L+ M+FL  Q +             D TCLKF +TGHSLGG+ AMGV+LLL+D    A  L A  +  +        E Y RE +           ++  PYE+VGGDIFNPG+ P +  +     +    ++S P    +    F      QS +     D+     L+  HH+LGD +S+ F +GKE+SY  +    H I  FL
Sbjct:  118 SRLSSITEQQRDFAHFCNVSYSNPDDRPTELRGYELLQGDMPLRDGADESGATTEPLNAQRWMVYRHPNRVNHALVFRGT--VDKLDIEYDAHLLTKGLADHKLMMDSAAFALRAMVFLEKQAKEERHAGAGGADSLDTTCLKFWVTGHSLGGSTAMGVMLLLNDPVAMAATLEANAKTHKSRQQF--LEMY-REKIVDXXXXXVAEIYSNRPYELVGGDIFNPGS-PPRCILLSNPCVCLFGLLSLPAYIISRCGLFCYRCCKQSRQHGPRADL-----LVNNHHVLGDTISMTFRMGKEQSYWPNHWKMHAIAQFL 424
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62.16914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWJ9_9PHAE5.270e-4537.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FQN2_ECTSI8.830e-3333.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62contigEcto-sp13_S_contig62:4503..6536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2034
Hectar predicted targeting categoryother localisation
Exons1
Cds size1026
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463863.226569-UTR-Ecto-sp13_S_contig62:4502..45231681463863.226569-UTR-Ecto-sp13_S_contig62:4502..4523Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig62 4503..4523 +
1681463863.245843-UTR-Ecto-sp13_S_contig62:5549..65361681463863.245843-UTR-Ecto-sp13_S_contig62:5549..6536Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig62 5550..6536 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463863.2366273-CDS-Ecto-sp13_S_contig62:4523..55491681463863.2366273-CDS-Ecto-sp13_S_contig62:4523..5549Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62 4524..5549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62.16914.1prot_Ecto-sp13_S_contig62.16914.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62 4524..5549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62.16914.1

>prot_Ecto-sp13_S_contig62.16914.1 ID=prot_Ecto-sp13_S_contig62.16914.1|Name=mRNA_Ecto-sp13_S_contig62.16914.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=342bp
MASTQESTSRRQEARGFSRSSFESLRTLGSRYKGRSKKSEMSTIEKDHAH
LSKEVYENPDSRKMILRAYIHRRDEIPGEGTRPSVPLNGERWAVYGAPDE
PRFVLAFRGTNITSRDDRTHGMNLIDTPIGKHKYIMDAAAWSLQVMLFLA
SQRRDGTCLKFSLTGHSLGGTVAMGVLLLLHDVPGTARRLAAGEEIFQDV
AGLPDYETYAREFLGPWNVAKERMTWATSPYEIVGGDIFNPGAWPTQKDV
AGGVAIAGAAMVSAPMAAAATAFAFASSIPGQSSERRDDRDVNSIDSLIT
THHILGDPLSLNFGLGKEKSYGTSKMFKHNINNFLKENEER*
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mRNA from alignment at Ecto-sp13_S_contig62:4503..6536+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62.16914.1 ID=mRNA_Ecto-sp13_S_contig62.16914.1|Name=mRNA_Ecto-sp13_S_contig62.16914.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2034bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62:4503..6536+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCAGCCCATCCGGTCAAAACATGGCGTCGACACAAGAATCAACGTCTCG
TCGCCAGGAGGCACGGGGTTTCTCGAGGTCCAGCTTCGAATCATTGCGCA
CTCTCGGAAGCCGGTACAAGGGGAGATCGAAGAAAAGCGAGATGAGCACC
ATAGAAAAGGACCACGCACACCTGAGCAAAGAAGTGTACGAAAACCCCGA
CAGCCGGAAGATGATCCTCCGCGCATACATTCATCGTCGCGATGAGATTC
CTGGCGAAGGCACGAGGCCTTCTGTACCACTGAACGGCGAGAGGTGGGCC
GTGTATGGGGCTCCCGACGAGCCGCGGTTCGTTCTTGCCTTCAGAGGGAC
GAACATCACAAGTCGTGACGACCGCACCCACGGCATGAACCTCATCGATA
CGCCTATCGGTAAACACAAGTACATCATGGACGCAGCGGCATGGTCGTTG
CAAGTGATGCTGTTCCTAGCAAGCCAGCGTCGTGACGGCACCTGCCTCAA
GTTTTCTTTAACAGGCCACTCTCTCGGTGGTACCGTGGCCATGGGGGTTC
TTCTCCTCCTGCATGATGTCCCCGGTACTGCAAGGCGTCTCGCGGCTGGT
GAGGAGATCTTTCAAGATGTGGCTGGTCTTCCCGACTACGAGACATATGC
GAGAGAATTTCTGGGCCCGTGGAACGTTGCGAAGGAAAGAATGACCTGGG
CAACCTCGCCGTATGAGATCGTCGGCGGGGACATCTTCAACCCTGGTGCT
TGGCCGACGCAAAAAGATGTGGCCGGTGGGGTAGCAATCGCAGGGGCAGC
CATGGTCAGCGCCCCCATGGCCGCTGCAGCTACAGCGTTCGCTTTTGCTA
GCTCAATACCCGGACAGAGTAGTGAAAGGCGCGACGATCGCGATGTCAAC
TCCATCGACTCTCTGATCACGACGCACCACATCCTTGGAGACCCCCTGTC
ACTCAACTTCGGCCTTGGCAAGGAAAAATCCTACGGCACCTCAAAAATGT
TCAAGCACAACATCAACAACTTCCTGAAGGAGAATGAAGAGCGCTAGAGA
TCAAGAAAATTTCCATTGCCAATATTGTGCTGTCGCCGGGGGTGAGTATC
GCTGATATTCTGCTTTTTATTTGTCGCACAGACAGGGTTATGCGTCCGTA
GGCGCAAACCTTAGTCTAGACGCGCAAGGGGCCGGGAAGGCGGGAACATG
TTAGGCGTGAATGCTGGGAACGGACTTACTTTTGCTTTCGAAACGAGAGT
GTGGGTTGTTTAGGTGTAATGCTAAGTTGGCTCGCTTCGGGTAAATTGAA
TGGAGGGGCACACATTCGTTTCGTGAGCGGTACACTGGTATTAGGAGAGG
CATGTGGCACTGCTGGTGTAGACTTCAAGCTTTGGAGCTACTACCCGGGC
AATCGGGATTTGGCGTGCGAAATGGTTCCCAGAGTGTTTTTTTTTTTCAA
GTTAAATCACGTCTCATTTGTGCCGAAGCGTCGTGAATATGAGGACTGCA
GTGAAGATTTTCATTATACGCATGTTAAATTATGAGTATTGGGACACATG
TAGATAATGACGCAACTGTCCTGATGACTCTGCATATATGTTTTGTATGC
GCTTCGTAGTCGTACCTTCCCGATTTCAACACTTGGTCAAGTAGTAGAAA
CGCGGTGTACAGTAGGCACGTAGGATATTTTGAAAATCAAGAGCCGAGCC
AAGATCAGGTTCCAAGACTGGTTGTCATATAACAAGCGCTCACAGTCGTC
TGTCTAAGGCCGCATGACGGTTATTCGCGTGTTTCAAATGCATTCGGGTT
GATTTTCGTACGTAAGCAAGTGTCCCTGAAAATTCCTGAAACAGTAGTAG
GAATGGTTCCTGTGATGTTTTCGGAGCACAACACGTAAAATGGTACTAAT
ATCGGTACCGGCTTTAATGTCGCCGAACGCTTCCGCACTGCTTTTTAAGC
TCTTTTGCGTACACGTCTCTGGTGGTACCGACGGGAACCATTAACGTTCG
AAGGACTCAGAGCGCGCACCCGCTTACCTGGCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62:4503..6536+

>mRNA_Ecto-sp13_S_contig62.16914.1 ID=mRNA_Ecto-sp13_S_contig62.16914.1|Name=mRNA_Ecto-sp13_S_contig62.16914.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1026bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62:4503..6536+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTCGACACAAGAATCAACGTCTCGTCGCCAGGAGGCACGGGGTTT
CTCGAGGTCCAGCTTCGAATCATTGCGCACTCTCGGAAGCCGGTACAAGG
GGAGATCGAAGAAAAGCGAGATGAGCACCATAGAAAAGGACCACGCACAC
CTGAGCAAAGAAGTGTACGAAAACCCCGACAGCCGGAAGATGATCCTCCG
CGCATACATTCATCGTCGCGATGAGATTCCTGGCGAAGGCACGAGGCCTT
CTGTACCACTGAACGGCGAGAGGTGGGCCGTGTATGGGGCTCCCGACGAG
CCGCGGTTCGTTCTTGCCTTCAGAGGGACGAACATCACAAGTCGTGACGA
CCGCACCCACGGCATGAACCTCATCGATACGCCTATCGGTAAACACAAGT
ACATCATGGACGCAGCGGCATGGTCGTTGCAAGTGATGCTGTTCCTAGCA
AGCCAGCGTCGTGACGGCACCTGCCTCAAGTTTTCTTTAACAGGCCACTC
TCTCGGTGGTACCGTGGCCATGGGGGTTCTTCTCCTCCTGCATGATGTCC
CCGGTACTGCAAGGCGTCTCGCGGCTGGTGAGGAGATCTTTCAAGATGTG
GCTGGTCTTCCCGACTACGAGACATATGCGAGAGAATTTCTGGGCCCGTG
GAACGTTGCGAAGGAAAGAATGACCTGGGCAACCTCGCCGTATGAGATCG
TCGGCGGGGACATCTTCAACCCTGGTGCTTGGCCGACGCAAAAAGATGTG
GCCGGTGGGGTAGCAATCGCAGGGGCAGCCATGGTCAGCGCCCCCATGGC
CGCTGCAGCTACAGCGTTCGCTTTTGCTAGCTCAATACCCGGACAGAGTA
GTGAAAGGCGCGACGATCGCGATGTCAACTCCATCGACTCTCTGATCACG
ACGCACCACATCCTTGGAGACCCCCTGTCACTCAACTTCGGCCTTGGCAA
GGAAAAATCCTACGGCACCTCAAAAATGTTCAAGCACAACATCAACAACT
TCCTGAAGGAGAATGAAGAGCGCTAG
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