mRNA_Ecto-sp13_S_contig61952.16910.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61952.16910.1
Unique NamemRNA_Ecto-sp13_S_contig61952.16910.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61952.16910.1 vs. uniprot
Match: D7FJU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJU1_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.120e-17
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 CRRRLGLPGRIRGVKVDTAFFTGNQAPRFSLQGAWLPQEPVSV 129
            C  +LGLPGRIRGVKVDTAFFTGNQAPRFSLQGAWLPQEP ++
Sbjct:   72 CIIKLGLPGRIRGVKVDTAFFTGNQAPRFSLQGAWLPQEPEAL 114
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BLAST of mRNA_Ecto-sp13_S_contig61952.16910.1 vs. uniprot
Match: A0A7S2TIL5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TIL5_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 1.850e-10
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   10 RLGLPGRIRGVKVDTAFFTGNQAPRFSLQGAWLPQE 117
            +LG PG IRGVK+DT FFTGNQAPRFSLQ A+L +E
Sbjct:   55 QLGHPGSIRGVKIDTRFFTGNQAPRFSLQAAYLSEE 90
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BLAST of mRNA_Ecto-sp13_S_contig61952.16910.1 vs. uniprot
Match: A0A7S4DWW2_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DWW2_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 7.510e-9
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   13 LGLPGRIRGVKVDTAFFTGNQAPRFSLQGAWLPQE 117
            LG PG IRGVK+DT FFTGNQAPRFSLQ A+L  +
Sbjct:   59 LGHPGSIRGVKIDTRFFTGNQAPRFSLQAAYLDDQ 93
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BLAST of mRNA_Ecto-sp13_S_contig61952.16910.1 vs. uniprot
Match: A0A836C8W1_9STRA (Galactose-binding domain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8W1_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 7.580e-9
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 CRRRLGLPGRIRGVKVDTAFFTGNQAPRFSLQGAWLPQEPVSV 129
            C  +LGLPG+I G+++DTA FTGN APR S+QGA+L  EP ++
Sbjct:   80 CIIKLGLPGQIVGIEIDTAHFTGNHAPRASVQGAYLDPEPEAL 122
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BLAST of mRNA_Ecto-sp13_S_contig61952.16910.1 vs. uniprot
Match: UPI000C206DEB (allantoicase-like n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C206DEB)

HSP 1 Score: 57.8 bits (138), Expect = 1.410e-8
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 CRRRLGLPGRIRGVKVDTAFFTGNQAPRFSLQGAWLPQEPV 123
            C  +LGLPG IRGV+VDTAFFTGN AP+FS+Q A L  E V
Sbjct:   74 CVIKLGLPGVIRGVEVDTAFFTGNYAPQFSVQAANLTLEEV 114
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BLAST of mRNA_Ecto-sp13_S_contig61952.16910.1 vs. uniprot
Match: A0A1Y1KFR9_PHOPY (Allantoate amidinohydrolase n=4 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1KFR9_PHOPY)

HSP 1 Score: 57.0 bits (136), Expect = 2.640e-8
Identity = 27/40 (67.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 CRRRLGLPGRIRGVKVDTAFFTGNQAPRFSLQGAWLPQEP 120
            C  +LGL G IRG+ VDTAFFTGN APRFSLQ   L  EP
Sbjct:   75 CIIKLGLSGLIRGIHVDTAFFTGNYAPRFSLQAVNLQNEP 114
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BLAST of mRNA_Ecto-sp13_S_contig61952.16910.1 vs. uniprot
Match: A0A068TKN5_BLAGE (Allantoate amidinohydrolase (Fragment) n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A068TKN5_BLAGE)

HSP 1 Score: 54.3 bits (129), Expect = 3.130e-8
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   10 RLGLPGRIRGVKVDTAFFTGNQAPRFSLQGAWL 108
            +LG+PG + G+ VDTAFFTGN APRFSLQ A+L
Sbjct:   27 KLGVPGVLHGITVDTAFFTGNYAPRFSLQAAYL 59
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BLAST of mRNA_Ecto-sp13_S_contig61952.16910.1 vs. uniprot
Match: UPI001454DE70 (allantoicase-like n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=UPI001454DE70)

HSP 1 Score: 55.1 bits (131), Expect = 1.270e-7
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   10 RLGLPGRIRGVKVDTAFFTGNQAPRFSLQGAWLPQEPVSV 129
            RLG+PG + G+ VDTAFFTGN APRFSLQ A L  E   +
Sbjct:  166 RLGVPGVLHGLTVDTAFFTGNYAPRFSLQAANLTPEEAEI 205
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BLAST of mRNA_Ecto-sp13_S_contig61952.16910.1 vs. uniprot
Match: A0A1Y1KHW0_PHOPY (Allantoate amidinohydrolase n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1KHW0_PHOPY)

HSP 1 Score: 52.8 bits (125), Expect = 1.420e-7
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:    1 CRRRLGLPGRIRGVKVDTAFFTGNQAPRFSLQ 96
            C  +LGL G IRG+ VDTAFFTGN APRFSLQ
Sbjct:   75 CIIKLGLSGLIRGIHVDTAFFTGNYAPRFSLQ 106
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BLAST of mRNA_Ecto-sp13_S_contig61952.16910.1 vs. uniprot
Match: A0A8K0GJ82_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0GJ82_9COLE)

HSP 1 Score: 54.3 bits (129), Expect = 2.380e-7
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 CRRRLGLPGRIRGVKVDTAFFTGNQAPRFSLQGAWLPQE 117
            C  +LG+PG I G+ +DTAFFTGN APRFSLQ A L  E
Sbjct:   76 CIIKLGIPGVIHGIDLDTAFFTGNYAPRFSLQAANLNDE 114
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61952.16910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJU1_ECTSI1.120e-1786.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2TIL5_9EUKA1.850e-1075.00Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7S4DWW2_9EUKA7.510e-974.29Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A836C8W1_9STRA7.580e-958.14Galactose-binding domain-like protein n=1 Tax=Trib... [more]
UPI000C206DEB1.410e-868.29allantoicase-like n=1 Tax=Onthophagus taurus TaxID... [more]
A0A1Y1KFR9_PHOPY2.640e-867.50Allantoate amidinohydrolase n=4 Tax=Photinus pyral... [more]
A0A068TKN5_BLAGE3.130e-869.70Allantoate amidinohydrolase (Fragment) n=1 Tax=Bla... [more]
UPI001454DE701.270e-762.50allantoicase-like n=1 Tax=Cryptotermes secundus Ta... [more]
A0A1Y1KHW0_PHOPY1.420e-775.00Allantoate amidinohydrolase n=1 Tax=Photinus pyral... [more]
A0A8K0GJ82_9COLE2.380e-764.10Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61952contigEcto-sp13_S_contig61952:245..373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score81.6
Seed ortholog evalue9.5e-14
Seed eggNOG ortholog2880.D7FJU1
Preferred nameALLC
Model size129
KEGG rclassRC00379,RC00712
KEGG koko:K01477
KEGG ReactionR02422
KEGG Pathwayko00230,ko01100,ko01120,map00230,map01100,map01120
KEGG ModuleM00546
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000255,GO:0003674,GO:0003824,GO:0004037,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010467,GO:0016787,GO:0016810,GO:0016813,GO:0017144,GO:0019954,GO:0030587,GO:0031152,GO:0031667,GO:0031668,GO:0031669,GO:0032502,GO:0033554,GO:0034641,GO:0042594,GO:0043170,GO:0043603,GO:0044237,GO:0044764,GO:0046483,GO:0048856,GO:0050896,GO:0051703,GO:0051704,GO:0051716,GO:0071496,GO:0071704,GO:0090702,GO:0098630,GO:0098743,GO:0099120,GO:1901360,GO:1901564
Exons1
EggNOG free text desc.allantoicase activity
EggNOG OGsCOG4266@1,KOG4145@2759
EC3.5.3.4
Cds size129
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463862.8636837-CDS-Ecto-sp13_S_contig61952:244..3731681463862.8636837-CDS-Ecto-sp13_S_contig61952:244..373Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61952 245..373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61952.16910.1prot_Ecto-sp13_S_contig61952.16910.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61952 245..373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61952.16910.1

>prot_Ecto-sp13_S_contig61952.16910.1 ID=prot_Ecto-sp13_S_contig61952.16910.1|Name=mRNA_Ecto-sp13_S_contig61952.16910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
CRRRLGLPGRIRGVKVDTAFFTGNQAPRFSLQGAWLPQEPVSV
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mRNA from alignment at Ecto-sp13_S_contig61952:245..373+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61952.16910.1 ID=mRNA_Ecto-sp13_S_contig61952.16910.1|Name=mRNA_Ecto-sp13_S_contig61952.16910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61952:245..373+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCGTCGTAGACTCGGACTGCCAGGCCGTATTCGGGGCGTCAAGGTGGA
CACCGCCTTCTTCACGGGAAACCAGGCGCCGCGGTTCTCTCTCCAGGGGG
CCTGGCTTCCGCAGGAGCCGGTGAGTGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61952:245..373+

>mRNA_Ecto-sp13_S_contig61952.16910.1 ID=mRNA_Ecto-sp13_S_contig61952.16910.1|Name=mRNA_Ecto-sp13_S_contig61952.16910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61952:245..373+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCGTCGTAGACTCGGACTGCCAGGCCGTATTCGGGGCGTCAAGGTGGA
CACCGCCTTCTTCACGGGAAACCAGGCGCCGCGGTTCTCTCTCCAGGGGG
CCTGGCTTCCGCAGGAGCCGGTGAGTGTT
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