mRNA_Ecto-sp13_S_contig61944.16908.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig61944.16908.1
Unique Name	mRNA_Ecto-sp13_S_contig61944.16908.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig61944.16908.1 vs. uniprot
Match: D7FL28_ECTSI (Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 7.070e-15
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 RWDEQTYYSLAESSEKSHRKLSKLVSQYDEVLEVSVSEVL 120
            +WDEQTYYSLAESSEKSHRKLSKLVSQYDEVLEVSVSEVL
Sbjct: 3632 KWDEQTYYSLAESSEKSHRKLSKLVSQYDEVLEVSVSEVL 3671

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BLAST of mRNA_Ecto-sp13_S_contig61944.16908.1 vs. uniprot
Match: A0A6H5JCJ9_9PHAE (Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ9_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.600e-13
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1

Query:    1 RWDEQTYYSLAESSEKSHRKLSKLVSQYDEVLEVSVSEVL 120
            +WDEQTYYSLAESSEKSHRKL +LVSQYDEVLEVSVSEVL
Sbjct: 2801 KWDEQTYYSLAESSEKSHRKLFQLVSQYDEVLEVSVSEVL 2840

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BLAST of mRNA_Ecto-sp13_S_contig61944.16908.1 vs. uniprot
Match: A0A662XM65_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XM65_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.890e-9
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 1

Query:    1 RWDEQTYYSLAESSEKSHRKLSKLVSQYDEVLEVSVSEVL 120
            RWDEQTYYSLAES+EKSHRKL K VS YD VL VS+  V+
Sbjct: 3430 RWDEQTYYSLAESAEKSHRKLMKFVSNYDAVLSVSMQTVI 3469

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BLAST of mRNA_Ecto-sp13_S_contig61944.16908.1 vs. uniprot
Match: A0A7S2SE36_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SE36_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.270e-9
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 1

Query:    1 RWDEQTYYSLAESSEKSHRKLSKLVSQYDEVLEVSVSEV 117
            +WDEQ+YYSL ESSEKSHRKL K + QYD+VLE+ VS +
Sbjct:  292 KWDEQSYYSLVESSEKSHRKLIKFLKQYDDVLEIPVSRI 330

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BLAST of mRNA_Ecto-sp13_S_contig61944.16908.1 vs. uniprot
Match: A0A0P1AZX7_PLAHL (Type a von willebrand factor domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AZX7_PLAHL)

HSP 1 Score: 58.5 bits (140), Expect = 6.590e-9
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1

Query:    1 RWDEQTYYSLAESSEKSHRKLSKLVSQYDEVLEVSVSEVL 120
            RWDEQTYYSLAES+EKSHRKL K V  YD VL VS+  V+
Sbjct: 4400 RWDEQTYYSLAESAEKSHRKLMKFVRDYDSVLNVSMQTVI 4439

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BLAST of mRNA_Ecto-sp13_S_contig61944.16908.1 vs. uniprot
Match: A0A6A3UTY1_9STRA (Midasin n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3UTY1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.230e-8
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1

Query:    1 RWDEQTYYSLAESSEKSHRKLSKLVSQYDEVLEVSVSEVL 120
            RWDEQTYYSLAES+EKSHRKL K V  YD VL VS+  V+
Sbjct: 4463 RWDEQTYYSLAESAEKSHRKLMKFVRNYDAVLTVSMQTVI 4502

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BLAST of mRNA_Ecto-sp13_S_contig61944.16908.1 vs. uniprot
Match: A0A6A4G7L0_9STRA (Midasin n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G7L0_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.230e-8
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1

Query:    1 RWDEQTYYSLAESSEKSHRKLSKLVSQYDEVLEVSVSEVL 120
            RWDEQTYYSLAES+EKSHRKL K V  YD VL VS+  V+
Sbjct: 4462 RWDEQTYYSLAESAEKSHRKLMKFVRNYDAVLTVSMQTVI 4501

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BLAST of mRNA_Ecto-sp13_S_contig61944.16908.1 vs. uniprot
Match: G4ZMS6_PHYSP (VWFA domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=G4ZMS6_PHYSP)

HSP 1 Score: 57.8 bits (138), Expect = 1.230e-8
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1

Query:    1 RWDEQTYYSLAESSEKSHRKLSKLVSQYDEVLEVSVSEVL 120
            RWDEQTYYSLAES+EKSHRKL K V  YD VL VS+  V+
Sbjct: 4441 RWDEQTYYSLAESAEKSHRKLMKFVRDYDAVLTVSMQTVI 4480

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BLAST of mRNA_Ecto-sp13_S_contig61944.16908.1 vs. uniprot
Match: H3GJC4_PHYRM (VWFA domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJC4_PHYRM)

HSP 1 Score: 57.8 bits (138), Expect = 1.230e-8
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1

Query:    1 RWDEQTYYSLAESSEKSHRKLSKLVSQYDEVLEVSVSEVL 120
            RWDEQTYYSLAES+EKSHRKL K V  YD VL VS+  V+
Sbjct: 4419 RWDEQTYYSLAESAEKSHRKLMKFVRNYDAVLTVSMQTVI 4458

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BLAST of mRNA_Ecto-sp13_S_contig61944.16908.1 vs. uniprot
Match: A0A329RXK7_9STRA (Midasin n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RXK7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.230e-8
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1

Query:    1 RWDEQTYYSLAESSEKSHRKLSKLVSQYDEVLEVSVSEVL 120
            RWDEQTYYSLAES+EKSHRKL K V  YD VL VS+  V+
Sbjct: 4416 RWDEQTYYSLAESAEKSHRKLMKFVRDYDAVLTVSMQTVI 4455

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig61944.16908.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig61944.16908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FL28_ECTSI	7.070e-15	97.50	Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
A0A6H5JCJ9_9PHAE	1.600e-13	92.50	Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
A0A662XM65_9STRA	1.890e-9	75.00	Uncharacterized protein (Fragment) n=2 Tax=Nothoph...	[more]
A0A7S2SE36_9STRA	6.270e-9	69.23	Hypothetical protein (Fragment) n=1 Tax=Eucampia a...	[more]
A0A0P1AZX7_PLAHL	6.590e-9	72.50	Type a von willebrand factor domain-containing pro...	[more]
A0A6A3UTY1_9STRA	1.230e-8	72.50	Midasin n=6 Tax=Phytophthora fragariae TaxID=53985...	[more]
A0A6A4G7L0_9STRA	1.230e-8	72.50	Midasin n=3 Tax=Phytophthora rubi TaxID=129364 Rep...	[more]
G4ZMS6_PHYSP	1.230e-8	72.50	VWFA domain-containing protein n=8 Tax=Phytophthor...	[more]
H3GJC4_PHYRM	1.230e-8	72.50	VWFA domain-containing protein n=1 Tax=Phytophthor...	[more]
A0A329RXK7_9STRA	1.230e-8	72.50	Midasin n=2 Tax=Phytophthora TaxID=4783 RepID=A0A3...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig61944	contig	Ecto-sp13_S_contig61944:553..672 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	77.0
Seed ortholog evalue	2.2e-12
Seed eggNOG ortholog	2880.D7FL28
Model size	120
KEGG ko	ko:K14572
KEGG Pathway	ko03008,map03008
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
EggNOG free text desc.	ATPase activity
EggNOG OGs	COG5271@1,KOG1808@2759
Cds size	120
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03009

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463862.7702904-CDS-Ecto-sp13_S_contig61944:552..672	1681463862.7702904-CDS-Ecto-sp13_S_contig61944:552..672	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig61944 553..672 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig61944.16908.1	prot_Ecto-sp13_S_contig61944.16908.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig61944 553..672 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig61944:553..672+
coding sequence from alignment at Ecto-sp13_S_contig61944:553..672+

protein sequence of mRNA_Ecto-sp13_S_contig61944.16908.1

>prot_Ecto-sp13_S_contig61944.16908.1 ID=prot_Ecto-sp13_S_contig61944.16908.1|Name=mRNA_Ecto-sp13_S_contig61944.16908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=40bp
RWDEQTYYSLAESSEKSHRKLSKLVSQYDEVLEVSVSEVL

mRNA from alignment at Ecto-sp13_S_contig61944:553..672+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig61944.16908.1 ID=mRNA_Ecto-sp13_S_contig61944.16908.1|Name=mRNA_Ecto-sp13_S_contig61944.16908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61944:553..672+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGGGACGAACAGACGTACTACTCGCTGGCCGAGTCTTCGGAAAAGTC
GCACCGAAAACTGTCTAAGCTGGTGTCTCAGTACGACGAGGTGCTGGAAG
TGTCCGTATCGGAGGTGCTC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61944:553..672+

>mRNA_Ecto-sp13_S_contig61944.16908.1 ID=mRNA_Ecto-sp13_S_contig61944.16908.1|Name=mRNA_Ecto-sp13_S_contig61944.16908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61944:553..672+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGGGACGAACAGACGTACTACTCGCTGGCCGAGTCTTCGGAAAAGTC
GCACCGAAAACTGTCTAAGCTGGTGTCTCAGTACGACGAGGTGCTGGAAG
TGTCCGTATCGGAGGTGCTC