mRNA_Ecto-sp13_S_contig6194.16907.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6194.16907.1
Unique NamemRNA_Ecto-sp13_S_contig6194.16907.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6194.16907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6194contigEcto-sp13_S_contig6194:2249..2707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size235
Hectar predicted targeting categoryother localisation
Exons2
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463862.725738-CDS-Ecto-sp13_S_contig6194:2248..23151681463862.725738-CDS-Ecto-sp13_S_contig6194:2248..2315Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6194 2249..2315 -
1681463862.7361152-CDS-Ecto-sp13_S_contig6194:2540..27071681463862.7361152-CDS-Ecto-sp13_S_contig6194:2540..2707Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6194 2541..2707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6194.16907.1prot_Ecto-sp13_S_contig6194.16907.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6194 2249..2707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6194.16907.1

>prot_Ecto-sp13_S_contig6194.16907.1 ID=prot_Ecto-sp13_S_contig6194.16907.1|Name=mRNA_Ecto-sp13_S_contig6194.16907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
SIEGAVAALHLRREGAAAVSFDADMNGDFPVIIRRTLERHTIETNEAKRN
GRYVSRFHRALDAAHGTGTRSAQVRESG
back to top

mRNA from alignment at Ecto-sp13_S_contig6194:2249..2707-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6194.16907.1 ID=mRNA_Ecto-sp13_S_contig6194.16907.1|Name=mRNA_Ecto-sp13_S_contig6194.16907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6194:2249..2707- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTATCGAGGGCGCCGTTGCTGCCCTCCACTTGAGGAGGGAAGGTGCCGC
CGCCGTGAGTTTCGACGCTGACATGAACGGAGACTTCCCTGTGATCATAC
GCCGAACCCTGGAAAGACACACCATTGAGACCAATGAGGCCAAGCGAAAC
GGGCGTTATGTGTCCAGGTGAATTTTAAGAGTAGTCTAATGGTCTTGTCT
TTTCATGCAGTTGTTGTCGTCACAGCCCACCTCGTGGTCGTGATGGGTTT
GCTCTGTCGATCACATTATCGCCGGTGCCACCGGTGGTGCTGTTGGTGCT
GATTGTTGCTGGCTTGTGCTCTTTGGTTGCTGGGTCGCAGTGGAAGTGAT
TGGCGACGTGTGACATTGTTACGCCATGTTTTAACGGCGCAGATTTCACC
GAGCTCTTGACGCTGCTCATGGCACAGGAACACGCTCCGCTCAAGTACGG
GAATCCGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6194:2249..2707-

>mRNA_Ecto-sp13_S_contig6194.16907.1 ID=mRNA_Ecto-sp13_S_contig6194.16907.1|Name=mRNA_Ecto-sp13_S_contig6194.16907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6194:2249..2707- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTATCGAGGGCGCCGTTGCTGCCCTCCACTTGAGGAGGGAAGGTGCCGC
CGCCGTGAGTTTCGACGCTGACATGAACGGAGACTTCCCTGTGATCATAC
GCCGAACCCTGGAAAGACACACCATTGAGACCAATGAGGCCAAGCGAAAC
GGGCGTTATGTGTCCAGATTTCACCGAGCTCTTGACGCTGCTCATGGCAC
AGGAACACGCTCCGCTCAAGTACGGGAATCCGGT
back to top