mRNA_Ecto-sp13_S_contig6193.16905.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6193.16905.1
Unique NamemRNA_Ecto-sp13_S_contig6193.16905.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6193.16905.1 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.830e-23
Identity = 69/94 (73.40%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:    1 ACNHPFLVLGKGFSLA----SSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSETPFEGGVVEGGDGGKSPPHYVQELYRRYRERVAGDNDGRSE 270
            ACNHPFLVLGKGFS+A    SS              XXXXXXXXXXXX   SET FE GVVEGGDGGKSPPHYVQELYRRYRERVAGDNDGR E
Sbjct: 1190 ACNHPFLVLGKGFSMAPSSASSAVPPGARRNQLGSAXXXXXXXXXXXXNNESETLFERGVVEGGDGGKSPPHYVQELYRRYRERVAGDNDGRKE 1283
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6193.16905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KHD4_9PHAE2.830e-2373.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6193contigEcto-sp13_S_contig6193:5060..5329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size270
Hectar predicted targeting categoryother localisation
Exons1
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463862.6919699-CDS-Ecto-sp13_S_contig6193:5059..53291681463862.6919699-CDS-Ecto-sp13_S_contig6193:5059..5329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6193 5060..5329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6193.16905.1prot_Ecto-sp13_S_contig6193.16905.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6193 5060..5329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6193.16905.1

>prot_Ecto-sp13_S_contig6193.16905.1 ID=prot_Ecto-sp13_S_contig6193.16905.1|Name=mRNA_Ecto-sp13_S_contig6193.16905.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
ACNHPFLVLGKGFSLASSSTSSAVPPGASRNQLGAAAAAAAAAANNESET
PFEGGVVEGGDGGKSPPHYVQELYRRYRERVAGDNDGRSE
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mRNA from alignment at Ecto-sp13_S_contig6193:5060..5329-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6193.16905.1 ID=mRNA_Ecto-sp13_S_contig6193.16905.1|Name=mRNA_Ecto-sp13_S_contig6193.16905.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6193:5060..5329- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTGCAACCACCCTTTTCTCGTTCTCGGGAAAGGATTTTCGTTGGCGTC
GTCGTCGACATCGTCCGCGGTGCCCCCGGGTGCCTCCCGGAATCAGCTAG
GTGCTGCTGCTGCTGCTGCTGCTGCGGCCGCCAACAACGAGTCGGAAACC
CCGTTTGAGGGAGGCGTCGTCGAGGGAGGGGACGGAGGGAAATCACCCCC
GCACTACGTGCAGGAGCTTTACCGCCGCTACAGGGAGCGGGTCGCCGGGG
ACAATGACGGGAGGAGCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6193:5060..5329-

>mRNA_Ecto-sp13_S_contig6193.16905.1 ID=mRNA_Ecto-sp13_S_contig6193.16905.1|Name=mRNA_Ecto-sp13_S_contig6193.16905.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6193:5060..5329- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTGCAACCACCCTTTTCTCGTTCTCGGGAAAGGATTTTCGTTGGCGTC
GTCGTCGACATCGTCCGCGGTGCCCCCGGGTGCCTCCCGGAATCAGCTAG
GTGCTGCTGCTGCTGCTGCTGCTGCGGCCGCCAACAACGAGTCGGAAACC
CCGTTTGAGGGAGGCGTCGTCGAGGGAGGGGACGGAGGGAAATCACCCCC
GCACTACGTGCAGGAGCTTTACCGCCGCTACAGGGAGCGGGTCGCCGGGG
ACAATGACGGGAGGAGCGAG
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