mRNA_Ecto-sp13_S_contig6193.16904.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6193.16904.1
Unique NamemRNA_Ecto-sp13_S_contig6193.16904.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6193.16904.1 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE)

HSP 1 Score: 513 bits (1322), Expect = 2.150e-164
Identity = 304/323 (94.12%), Postives = 306/323 (94.74%), Query Frame = 3
Query:    3 SGGLPSQGGGAGSLAFVDSVVDQLREDGEMAKEECPVCLEEPMSSPALTPCAHLICFDCLRDCLRREACCPVCRSPMTTADIIEVSGSQPRGKAVAAPRKPPPSIPSEGAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWIGSTKLARLELELRQMRKKTPGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESITVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEEQAIDRIHRLGQLNEVSVKRFVVSGTVEDKMLALQEVKGRMAKNALAAGSVNESQKLRVEDLIQFFK 971
            SGGLPSQGGG GSLAFVDSVVDQLREDGEMAKEECPVCLEEPMSSPALTPCAHLIC  CLRDCLRREACCPVCRSPMTTADIIEVS SQP GKAVAAPRKPP           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWIGSTKLARLELELR+MRKKTPGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDES+TVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEEQAIDRIHRLGQLNEVSVKRFVVSGTVEDKMLALQEVKGRMAKNALAAGS NESQKLRVEDLIQFFK
Sbjct: 1299 SGGLPSQGGGVGSLAFVDSVVDQLREDGEMAKEECPVCLEEPMSSPALTPCAHLICLHCLRDCLRREACCPVCRSPMTTADIIEVSASQPTGKAVAAPRKPPXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWIGSTKLARLELELREMRKKTPGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESVTVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEEQAIDRIHRLGQLNEVSVKRFVVSGTVEDKMLALQEVKGRMAKNALAAGSANESQKLRVEDLIQFFK 1616          
BLAST of mRNA_Ecto-sp13_S_contig6193.16904.1 vs. uniprot
Match: A0A6V1XFX6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XFX6_HETAK)

HSP 1 Score: 216 bits (550), Expect = 9.990e-65
Identity = 111/177 (62.71%), Postives = 132/177 (74.58%), Query Frame = 3
Query:  444 WIGSTKLARLELELRQMRKK-TPGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESITVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEEQAIDRIHRLGQLNEVSVKRFVVSGTVEDKMLALQEVKGRMAKNALAAGSVNESQKLRVEDLIQFFK 971
            W GS KL  LE EL  MR+   P  KAVVFSQWT+MLDL E  + R GW   RLDG+MSQQQRE AL+ FAT+  I VML+SLKAGGVGLNLT AS V L+DPWWNPA+E QAIDR+HRLGQ   V V+R VV  TVE K+LALQE K ++A+ AL +G + E+ KL++ED+I FFK
Sbjct:   17 WQGSAKLDCLERELGAMRRGGDPARKAVVFSQWTYMLDLVEVLLRRMGWRHTRLDGSMSQQQREDALERFATETDIPVMLLSLKAGGVGLNLTQASLVFLIDPWWNPAIEAQAIDRVHRLGQTRAVQVRRLVVRDTVEGKLLALQERKKQLAQTALQSGKLEEASKLKLEDMIDFFK 193          
BLAST of mRNA_Ecto-sp13_S_contig6193.16904.1 vs. uniprot
Match: A0A425DCE9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DCE9_9STRA)

HSP 1 Score: 218 bits (555), Expect = 3.390e-61
Identity = 125/315 (39.68%), Postives = 178/315 (56.51%), Query Frame = 3
Query:   48 FVDSVVDQLREDGEMAKEECPVCLEEPMSSPALTPCAHLICFDCLRDCLRREACCPVCRSPMTTADIIEVSGSQPRGKAVAAPRKP-----PPSIPSEGAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWIGSTKLARLELELRQMRKKTPGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESITVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEEQAIDRIHRLGQLNEVSVKRFVVSGTVEDKMLALQEVKGRMAKNALA---AGSVNESQKLRVEDLIQFF 968
            ++ + + +++++G +  +ECPVCL+ P++ P LTPCAHL+C  C+   L    CCPVCR+ ++   +I V            P KP     PP     G A                                    W GS KL +L ++L  +     G K VVFSQWTHMLDL ++++ + G+T  R DG++ Q  RE  L  F T   + V+++SLKAGGVGLNLTAAS VI++DPWWNP +E+QAIDR+HRLGQ  +V VK+++V GTVED +L LQ+ K  +A   LA   AG+ N+  +L + DL+ FF
Sbjct:  288 YIKNRILEIQDEG-LECQECPVCLDVPVA-PVLTPCAHLMCHACVVAFLSNGGCCPVCRAHISPDQLIRVDP----------PDKPTTGDNPPDDDDNGTAPL----------------------------------WAGSAKLTQLVVDLNSIEA---GRKVVVFSQWTHMLDLIQSTLHQHGYTHCRFDGSLKQDDREKVLHRFNTQPDVQVLVISLKAGGVGLNLTAASVVIMMDPWWNPGIEDQAIDRVHRLGQTRDVLVKKYIVEGTVEDMILTLQQRKATLASTVLATSKAGADND-WRLSLADLLTFF 552          
BLAST of mRNA_Ecto-sp13_S_contig6193.16904.1 vs. uniprot
Match: A0A2P4X6Z0_9STRA (DNA repair protein RAD5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin, p n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X6Z0_9STRA)

HSP 1 Score: 206 bits (525), Expect = 2.610e-59
Identity = 126/332 (37.95%), Postives = 183/332 (55.12%), Query Frame = 3
Query:   18 SQGGGAGSLAFVDSVVDQLREDGEMAKEECPVCLEEPMSSPALTPCAHLICFDCLRDCLRR--EACCPVCRSPMTTADIIEVSGSQPRGKAVAAPRKPPPS---IPSEGAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWIGSTKLARLELELRQMRKKTPGA------KAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESITVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEEQAIDRIHRLGQLNEVSVKRFVVSGTVEDKMLALQEVKGRMAKNALAAGSVNE---SQKLRVEDLIQFFK 971
            S  GG  + +++ SV+ Q+ EDG +  +ECP+CL+ P ++  LTPCAH++C  CLRD L    E  CPVCR+ +  A + ++               PPPS   +    + A+                                     S KL +L  +L+ ++ +   A      K VVFSQWT MLD+    + R  ++    +G ++Q+ RE  L  FA D ++ V+++SLKAGGVGLNLT AS VILLDPWWNP VEEQAIDR+HRLGQ  +V VKR+VV+ TVED +L LQ+ K ++AK+ L     ++   S++L ++DL  FF+
Sbjct:   21 SNSGGGLTASYIQSVIAQV-EDG-LESQECPICLDPPQNA-VLTPCAHVLCDQCLRDSLANDPENGCPVCRTVVDMAKVFKL---------------PPPSTSKVQDRDSKASGPTNNTLVEEIKCTTADDDTGFE--------------SAKLQQLLRDLKAIKVENNNASPEQKRKVVVFSQWTSMLDMVSELLTRNSFSHCTFNGGLNQEARERVLSKFAKDPNVEVLVISLKAGGVGLNLTCASVVILLDPWWNPGVEEQAIDRVHRLGQTQDVIVKRYVVNDTVEDMILQLQQRKEKLAKHVLVVSKAHDERRSERLNLDDLRSFFR 320          
BLAST of mRNA_Ecto-sp13_S_contig6193.16904.1 vs. uniprot
Match: A0A6G0XYJ5_9STRA (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYJ5_9STRA)

HSP 1 Score: 219 bits (557), Expect = 4.890e-59
Identity = 124/313 (39.62%), Postives = 181/313 (57.83%), Query Frame = 3
Query:   45 AFVDSVVDQLREDGEMAKEECPVCLEEPMSSPALTPCAHLICFDCLRDCLR---REACCPVCRSPMTTADIIEVSGSQPRGKAVAAPRKPPPSIPSEGAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWIGSTKLARLELELRQMRKKTPGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESITVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEEQAIDRIHRLGQLNEVSVKRFVVSGTVEDKMLALQEVKGRMAKNALAAG--SVNESQKLRVEDLIQFF 968
            +++ + + +++E+G +  +ECPVCLE P  SP LTPCAHL+C  C+   L    +EA CPVCR+ ++   +I          A+  P KP P+   E                                       W GS+KL +L  +L+ + K   G K VVFSQW+HMLDL E+++++ G++  R DG + Q+ RE  L  F  D +I V+++SLKAGGVGLNLTAAS VI+LDPWWNP +E+QAIDR+HRLGQ  +V VK+++V  TVE+ +L LQ+ K  +A   LA    + +   +L + DL++FF
Sbjct:  713 SYIKNRILEIQEEG-LDCQECPVCLEVP-ESPVLTPCAHLLCKSCVVTFLESNGQEAGCPVCRADVSPDQLI----------AIEPPEKPTPTTQDES--------------------------------------WAGSSKLNQLVKDLKSIEK---GRKVVVFSQWSHMLDLVESTLSKHGYSCLRFDGTLKQEDRERVLLRFNNDPTIQVLVISLKAGGVGLNLTAASVVIMLDPWWNPGIEDQAIDRVHRLGQTRDVMVKKYIVQDTVEEMILQLQQRKATLASTVLATAKSAADNDGRLSLADLLKFF 972          
BLAST of mRNA_Ecto-sp13_S_contig6193.16904.1 vs. uniprot
Match: W4GNE1_9STRA (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=15 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GNE1_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.250e-58
Identity = 125/315 (39.68%), Postives = 178/315 (56.51%), Query Frame = 3
Query:   48 FVDSVVDQLREDGEMAKEECPVCLEEPMSSPALTPCAHLICFDCLRDCLRREACCPVCRSPMTTADIIEVSGSQPRGKAVAAPRKP-----PPSIPSEGAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWIGSTKLARLELELRQMRKKTPGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESITVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEEQAIDRIHRLGQLNEVSVKRFVVSGTVEDKMLALQEVKGRMAKNALA---AGSVNESQKLRVEDLIQFF 968
            ++ + + +++++G +  +ECPVCL+ P++ P LTPCAHL+C  C+   L    CCPVCR+ ++   +I V            P KP     PP     G A                                    W GS KL +L ++L  +     G K VVFSQWTHMLDL ++++ + G+T  R DG++ Q  RE  L  F T   + V+++SLKAGGVGLNLTAAS VI++DPWWNP +E+QAIDR+HRLGQ  +V VK+++V GTVED +L LQ+ K  +A   LA   AG+ N+  +L + DL+ FF
Sbjct:  764 YIKNRILEIQDEG-LECQECPVCLDVPVA-PVLTPCAHLMCHACVVAFLSNGGCCPVCRAHISPDQLIRVDP----------PDKPTTGDNPPDDDDNGTAPL----------------------------------WAGSAKLTQLVVDLNSIEA---GRKVVVFSQWTHMLDLIQSTLHQHGYTHCRFDGSLKQDDREKVLHRFNTQPDVQVLVISLKAGGVGLNLTAASVVIMMDPWWNPGIEDQAIDRVHRLGQTRDVLVKKYIVEGTVEDMILTLQQRKATLASTVLATSKAGADND-WRLSLADLLTFF 1028          
BLAST of mRNA_Ecto-sp13_S_contig6193.16904.1 vs. uniprot
Match: A0A1D6Q2S9_MAIZE (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 n=8 Tax=Zea mays TaxID=4577 RepID=A0A1D6Q2S9_MAIZE)

HSP 1 Score: 204 bits (518), Expect = 1.150e-57
Identity = 120/312 (38.46%), Postives = 168/312 (53.85%), Query Frame = 3
Query:   39 SLAFVDSVVDQLREDGEMAKEECPVCLEEPMSSPALTPCAHLICFDCLRDCLRREAC--CPVCRSPMTTADIIEVSGSQPRGKAVAAPRKPPPSIPSEGAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWIGSTKLARLELELRQMRKKTPGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESITVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEEQAIDRIHRLGQLNEVSVKRFVVSGTVEDKMLALQEVKGRMAKNALAAGSVNESQKLRVEDLIQFF 968
            S A+++ VV +L++D    + ECP+CLE       LTPCAH +C +CL    R      CPVCR  M+  D+I                    + P++                                       W+ S+K++ L  EL  +R    GAK++VFSQWT  LDL +  ++R  ++F RLDG ++ QQRE  +K F+ D+ I V+L+SLKAGGVG+NLTAAS   ++DPWWNPAVEEQA+ RIHR+GQ   VS++RF+V GTVE++M A+Q  K RM   AL    V  +   R+E+L   F
Sbjct:  118 SRAYIEQVVQELQKD----EGECPICLEA-FEDAVLTPCAHRLCRECLLSSWRSATAGLCPVCRMSMSKQDLI--------------------TAPTDNR-----------------------------FQIDVEKNWVESSKISALLQELEALRSS--GAKSIVFSQWTAFLDLLQIPLSRNNFSFARLDGTLNLQQREKVIKEFSEDKGILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKTVSIRRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTA---RIEELKMLF 370          
BLAST of mRNA_Ecto-sp13_S_contig6193.16904.1 vs. uniprot
Match: A0A1V9ZG98_9STRA (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZG98_9STRA)

HSP 1 Score: 214 bits (546), Expect = 1.710e-57
Identity = 123/310 (39.68%), Postives = 176/310 (56.77%), Query Frame = 3
Query:   48 FVDSVVDQLREDGEMAKEECPVCLEEPMSSPALTPCAHLICFDCLRDCLRREACCPVCRSPMTTADIIEVSGSQPRGKAVAAPRKPPPSIPSEGAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWIGSTKLARLELELRQMRKKTPGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESITVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEEQAIDRIHRLGQLNEVSVKRFVVSGTVEDKMLALQEVKGRMAKNALAAGSVNESQ--KLRVEDLIQFFK 971
            +V S + +++E+G +  +ECPVCL+ P   P LTPCAHL+C +C R  +     CPVCR+ +  A ++ V           AP +   + P+ G A                                      GS KL +L  +L  +R   P  K VVFSQWTHML+L + ++++ G++  R DG++ Q+ RE  L  F+  ++  V+++SLKAGGVGLNLTAAS VILLDPWWNPA+E+QA+DR+HRLGQ ++V VK++VV  TVED +L LQE K  MA   LA          +L + DL++FF+
Sbjct:  732 YVKSRILEIQEEG-LDCQECPVCLDVPQL-PVLTPCAHLLCHECARAAIDASPVCPVCRADVAFAQLVPV-----------APPEKTDATPAGGGA--------------------------------------GSAKLRQLVQDLDALRATEPHRKVVVFSQWTHMLELVQTTLSQHGFSHVRFDGSLKQEDRERVLNEFSRGDA-QVLVISLKAGGVGLNLTAASVVILLDPWWNPALEDQAVDRVHRLGQESDVIVKKYVVEDTVEDMILQLQERKATMASTVLATAKPGSDSDGRLSLSDLLKFFR 989          
BLAST of mRNA_Ecto-sp13_S_contig6193.16904.1 vs. uniprot
Match: A0A453NBD4_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453NBD4_AEGTS)

HSP 1 Score: 201 bits (510), Expect = 1.800e-57
Identity = 122/312 (39.10%), Postives = 168/312 (53.85%), Query Frame = 3
Query:   39 SLAFVDSVVDQLREDGEMAKEECPVCLEEPMSSPALTPCAHLICFDCLRDCLRREAC--CPVCRSPMTTADIIEVSGSQPRGKAVAAPRKPPPSIPSEGAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWIGSTKLARLELELRQMRKKTPGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESITVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEEQAIDRIHRLGQLNEVSVKRFVVSGTVEDKMLALQEVKGRMAKNALAAGSVNESQKLRVEDLIQFF 968
            S A+++ VV +L++     + ECP+CLE       LTPCAH +C +C+    +  +   CPVCR  MT  D+I             AP      +  E                                       W+ S+K++ L  EL  +R    GAK++VFSQWT  LDL E  ++R G +F RLDG ++ QQRE  ++ F+ D+ I V+L+SLKAGGVG+NLTAAS   ++DPWWNPAVEEQA+ RIHR+GQ   VS+KRF+V GTVE++M A+Q  K RM   AL      E +  R+E+L   F
Sbjct:   37 SKAYIEEVVQELQK----GEGECPICLEA-FEDAVLTPCAHRLCRECILSSWQSPSAGLCPVCRKSMTKQDLIT------------APTNSRFQVDVE-------------------------------------KNWVESSKISFLLQELESLRSS--GAKSIVFSQWTAFLDLLEIPLSRHGISFTRLDGTLNLQQRERVIREFSEDKRILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKSVSIKRFIVKGTVEERMEAVQARKQRMISGALTD---QEFRTARLEELKMLF 289          
BLAST of mRNA_Ecto-sp13_S_contig6193.16904.1 vs. uniprot
Match: A0A3L6EXF3_MAIZE (Uncharacterized protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A3L6EXF3_MAIZE)

HSP 1 Score: 204 bits (518), Expect = 3.160e-57
Identity = 120/312 (38.46%), Postives = 168/312 (53.85%), Query Frame = 3
Query:   39 SLAFVDSVVDQLREDGEMAKEECPVCLEEPMSSPALTPCAHLICFDCLRDCLRREAC--CPVCRSPMTTADIIEVSGSQPRGKAVAAPRKPPPSIPSEGAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWIGSTKLARLELELRQMRKKTPGAKAVVFSQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESITVMLVSLKAGGVGLNLTAASTVILLDPWWNPAVEEQAIDRIHRLGQLNEVSVKRFVVSGTVEDKMLALQEVKGRMAKNALAAGSVNESQKLRVEDLIQFF 968
            S A+++ VV +L++D    + ECP+CLE       LTPCAH +C +CL    R      CPVCR  M+  D+I                    + P++                                       W+ S+K++ L  EL  +R    GAK++VFSQWT  LDL +  ++R  ++F RLDG ++ QQRE  +K F+ D+ I V+L+SLKAGGVG+NLTAAS   ++DPWWNPAVEEQA+ RIHR+GQ   VS++RF+V GTVE++M A+Q  K RM   AL    V  +   R+E+L   F
Sbjct:  157 SRAYIEQVVQELQKD----EGECPICLEA-FEDAVLTPCAHRLCRECLLSSWRSATAGLCPVCRMSMSKQDLI--------------------TAPTDNR-----------------------------FQIDVEKNWVESSKISALLQELEALRSS--GAKSIVFSQWTAFLDLLQIPLSRNNFSFARLDGTLNLQQREKVIKEFSEDKGILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKTVSIRRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTA---RIEELKMLF 409          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6193.16904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHD4_9PHAE2.150e-16494.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1XFX6_HETAK9.990e-6562.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A425DCE9_9STRA3.390e-6139.68Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A2P4X6Z0_9STRA2.610e-5937.95DNA repair protein RAD5, SWI/SNF-related matrix-as... [more]
A0A6G0XYJ5_9STRA4.890e-5939.62RanBP-type and C3HC4-type zinc finger-containing p... [more]
W4GNE1_9STRA1.250e-5839.68RanBP-type and C3HC4-type zinc finger-containing p... [more]
A0A1D6Q2S9_MAIZE1.150e-5738.46Putative SWI/SNF-related matrix-associated actin-d... [more]
A0A1V9ZG98_9STRA1.710e-5739.68RanBP-type and C3HC4-type zinc finger-containing p... [more]
A0A453NBD4_AEGTS1.800e-5739.10Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A3L6EXF3_MAIZE3.160e-5738.46Uncharacterized protein n=2 Tax=Zea mays TaxID=457... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6193contigEcto-sp13_S_contig6193:756..5016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score209.1
Seed ortholog evalue2.7e-51
Seed eggNOG ortholog112098.XP_008615200.1
Model size1404
KEGG koko:K15505
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
Cds size885
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6193.16904.1prot_Ecto-sp13_S_contig6193.16904.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6193 1186..4468 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463862.5278597-UTR-Ecto-sp13_S_contig6193:755..11851681463862.5278597-UTR-Ecto-sp13_S_contig6193:755..1185Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6193 756..1185 -
1681463862.5901046-UTR-Ecto-sp13_S_contig6193:4468..44801681463862.5901046-UTR-Ecto-sp13_S_contig6193:4468..4480Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6193 4469..4480 -
1681463862.5989325-UTR-Ecto-sp13_S_contig6193:4939..50161681463862.5989325-UTR-Ecto-sp13_S_contig6193:4939..5016Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6193 4940..5016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463862.5381532-CDS-Ecto-sp13_S_contig6193:1185..12841681463862.5381532-CDS-Ecto-sp13_S_contig6193:1185..1284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6193 1186..1284 -
1681463862.5468693-CDS-Ecto-sp13_S_contig6193:1555..16761681463862.5468693-CDS-Ecto-sp13_S_contig6193:1555..1676Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6193 1556..1676 -
1681463862.5554-CDS-Ecto-sp13_S_contig6193:2268..23781681463862.5554-CDS-Ecto-sp13_S_contig6193:2268..2378Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6193 2269..2378 -
1681463862.5639784-CDS-Ecto-sp13_S_contig6193:3038..31461681463862.5639784-CDS-Ecto-sp13_S_contig6193:3038..3146Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6193 3039..3146 -
1681463862.572612-CDS-Ecto-sp13_S_contig6193:3607..39281681463862.572612-CDS-Ecto-sp13_S_contig6193:3607..3928Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6193 3608..3928 -
1681463862.5812926-CDS-Ecto-sp13_S_contig6193:4342..44681681463862.5812926-CDS-Ecto-sp13_S_contig6193:4342..4468Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6193 4343..4468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6193.16904.1

>prot_Ecto-sp13_S_contig6193.16904.1 ID=prot_Ecto-sp13_S_contig6193.16904.1|Name=mRNA_Ecto-sp13_S_contig6193.16904.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=295bp
MAKEECPVCLEEPMSSPALTPCAHLICFDCLRDCLRREACCPVCRSPMTT
ADIIEVSGSQPRGKAVAAPRKPPPSIPSEGAAATGSSSSSSSSSSNGGAG
ARTKPAPCDTGGGGGGGGWIGSTKLARLELELRQMRKKTPGAKAVVFSQW
THMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESITVMLVSL
KAGGVGLNLTAASTVILLDPWWNPAVEEQAIDRIHRLGQLNEVSVKRFVV
SGTVEDKMLALQEVKGRMAKNALAAGSVNESQKLRVEDLIQFFK*
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mRNA from alignment at Ecto-sp13_S_contig6193:756..5016-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6193.16904.1 ID=mRNA_Ecto-sp13_S_contig6193.16904.1|Name=mRNA_Ecto-sp13_S_contig6193.16904.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6193:756..5016- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCGGGCGGGCTTCCAAGCCAAGGCGGTGGGGCGGGAAGCCTGGCGTTT GTCGACAGCGTCGTCGATCAGCTACGGGTGAGATGTTTTTTCAGGGTAAT AGTTGTTGTTCGCTGTCCGTTCCTCTCCAAACAGCGTTGGTCGACAGAGA CAGACAGAGAGAGTGAAAAGCCCTGTTCTAAAATTTGTCTCAGACTCGGA TGACACGTTTTTGCAGTTGCTGTTGTCTTCTCTTCGTTCGTTGCTGATGT TGGGGCACGAGGATAATGGGGCTCGCGGCTCCGCGGGAGCTCCAGATTGG GGCCACAGAGTCCCTTGTCCACCACGGCGCCTTACGACTGTGTGCGTTGC ATCCAACTTCGAGATGGCAGGCAAAGGACCGGCCAGCCCCCATCTCGTGC CGACAATCACCCCAGCATATATGTGACGCTCCCTCCCAACCACTCCCCCA CCGCGTGCCCCCCCTCTCAACATCAACTATCTCCCCCCGGTCCCGCTCCC ATGTGGGTCGGCCGCACCTCGGTTTGGCTCGACCAGGAGGACGGAGAAAT GGCGAAAGAGGAGTGCCCCGTGTGCCTCGAGGAGCCCATGTCCTCGCCCG CTCTCACGCCGTGCGCGCACCTGATATGCTTTGATTGCCTTCGAGACTGC CTGCGGAGAGAAGCTTGCTGCCCGGTGTGTGTGTGAGAGAAAGAGAGAGA GAGAAAGAAGAAACAAAAAAGATCGGACAGAGGAGACGCGTGACCTGCAT CCGAGTCGCAAGTTTCAGAGAGAGAGAGAGAGAGAGAGATATGCTAGCAG GGGGTAGAACATACTGAAAGGAACGTGTTGTACGGCTACACAAGTTGGAG AGAGAGAGATGGAATATCGTAGGAGGGCGGCGCGATGGGCGGCACGAGTG TGCCACCCTTCGCTCAAGCCACCGTTCGTGGTCATGTCGCCGTCACGAAC CAGCGTTGCCCCTGTACATTGCTCTCTGAATCTCACCACCATCCATTCGC CAACCCCCCCCACCGCACCCCTCCCTCCACCGGTATCACCACCGTCGTGC GTCACCTCCTCCCCTCCCCCCCCCCGCTCCCACCGAAGGTTTGCCGGTCG CCAATGACGACCGCAGACATCATTGAAGTGTCCGGCTCACAACCGAGGGG AAAAGCCGTAGCCGCCCCCCGCAAGCCCCCACCTTCGATTCCTTCGGAAG GAGCGGCGGCCACAGGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAAC GGCGGAGCGGGAGCGCGGACTAAGCCGGCACCATGCGACACCGGCGGTGG CGGCGGCGGCGGGGGGTGGATTGGGAGCACCAAGCTAGCAAGATTGGAGC TTGAGCTGCGACAGATGCGAAAGAAGACACCCGGCGCTAAGGCCGTCGTC TTCTCTCAGGTGCCAATTGTAGGTTGCTTTTTCATGCAAATGGTGCTTCT TTCGGTTTGGGATGGGTGGAAAAAAATATGCGGTCAGTCAGGCTGTTTGT GTCCCACCCTCTTGTTTGGACGAGTGAGGAAGGTTTTGCTTTTGTTGCGA TTTCCTGTTCGCTGCTCGATCGATCCCCCGACTGTGGTGGGTGTCAACAC GTGCCGTACCTTAGCCCCGCGACGTTTCCCGGGCCGCGTCTGTGTTTGGA ACCTGGATGGCGTGGCTAGACGGGAGATTCGTCCCGTCAACCTTCGGCCC CCTCCCTGCCCCTGTAGGTCCTCTCTCTGTACCTATTCCTCTGTCTTTCC CTCTCCCTCTCTCCCTCCCCCTCCCTCTCGTTCTCGTGTGTTGCTGACTA TCTACATCTCGCCCTCCTTGGCCATACCTGTGCCGCCATATTCTGCCGCT TCTGTGACCATTTGGGGCAGTGGACTCACATGCTGGATCTTGCCGAGGCT AGCATTGCCAGGGGAGGGTGGACGTTCCGAAGGCTGGACGGAGCCATGTC CCAACAACAGCGGGAGTCCGCTCTCAAGGTAGACAGCTCTCTCAAGAAGA AGACACAATGTTTCACCCGATTTGCATCGTTGCTTGTGCGTTGTGGCCTG CCTTTTTTGTCTTGTATTGGGCGGGTCGTGGATTGTCTGTCCCTGGCCCT TGTTGACTAAACAAGGCCCAGGTTTTGTCTGACAGTTTTTTTTTCGTGCG TTTTACTGCCCTGTTATTTTACTGCATCGTGGTGTGTTGTGTCAAACCCA TAAGTCCTGATCTTATTCGTTGACGCAATAATGACTGGTGTGCATACACA TCGACAATGTTGGGAGTGCCGCAAGGTCAACTTTGTGTTTCGCCAACGCG CTTGTCCACCGCGTGCCGGGTGCACGTTTCCGGCGCTTCTTTTCGTTCGT CAAGGCAGTCATTTTTACGCTGCTCTCGCAGATGCTCGACATCAAGTTTA AAGGATCTCTGTTGATGAAAAACACGTCGACGTATACTACCCCGACTCGA GTTGGCCGCTGAGAGTTTCTCTCTCGAGTAGAACGGTCTCCCCCTGCATA CTTCCCCATCCCCACCCACCCCCCCTCTCCCTTTCTTCACACGGCCACGT GAAACTGTCGGCTTCACGCCAACAATGTGACACGAGATCGGATCTTTTTT TGACACGAGATCGGATCTTTTTTTCCTTCACTACACAGGGCTTCGCGACG GACGAGAGCATCACCGTGATGCTGGTCTCGCTCAAGGCCGGCGGTGTCGG CCTCAACCTTACGGCAGCATCGACGGTCATCCTCCTCGACCCTTGGTGGT GAGCACCCCCCCCCCTTCCCGGGGGGGGAAAGAGTAGACGCGAACGGCCT CAAGATAACGTTGGGCAACTCTGGCTGGGCGGAAGAGGACGCTTGTGTCT ACCATTGGAGTGGCAGACCGTACCAGCTGCGTGGACACGAGACACGAGAC ACAGCCTTTCGTGGACAGTGTGGCGGGAGCCCTTACCCCCCTACAACATC TGTCTCCCGCTCCCTTCTCTCCGTGCTCCTTCGAAGTTGGTCTCCTTGTT TCCAGTAACCTGGAAGACTTCGGGCGAGCAAGCGACGACCTGAGCGCGCC TCCCTCCTCCTACCTGCTGCTGCTGTCGCGTGCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCGCCCCCCGC ACGGCAAAACACCCCGCACCCGACACCGAGCACCGCCCCCCTGCCNNNNN NNNNNAGACTTCGGGCGAGCAAGCGACGACCTGCGCCCCCCCCCCCCCCC CCCCCTGCTGCTGCTGTCGCCTGCCCCCCCCCCCCCCCCGTTGCATTCCG CCGCCGTCGTCCCGCCAAACCTCTTGCGTTACGTTACCAGGAACCCGGCG GTCGAAGAGCAAGCGATCGACCGAATCCACCGCCTGGGCCAGCTGAATGA AGTCAGCGTCAAGCGGTTTGTCGTGTCGGGAACCGTCGAGGACAAAATGC TCGCGCTTCAGGTGCGTGAATTTGGTACTTAGGTCACATGTACCCATGTT TGGGTTTCTTCAGCTGAAGCCGACCGCATTTACCGACTGAGCGGGTCAAC ACAGGAACCAATCGAATGTTTTCGAGTCCGTGTCTGGACGTAGTGTTGGT AAAAAGGAAGGCATATGCCTTAAAAAGGAACCCTGACGCTCCTACCCAAC CCCTCCCCCCCCCGCGCGCGCCTTCTGGTGTGCAAACTCCGTGTCCCGAC TCACCGACGGTGATCAATTCGATTGGTCACAGGAAGTGAAGGGCAGAATG GCCAAGAACGCCCTCGCCGCCGGGTCCGTGAACGAGAGCCAAAAGCTCAG AGTCGAGGACCTCATACAGTTCTTCAAGTGATGGGTCTGCTGCAGAACTG CTCATAGAGCTACAAAGCAGTAGCAGAGTCGACTACCCGTCCCCCCACCC TGGAGTTTTCCAATTTGCCCCCGGTACCCTACGGTCATGCCCTCGTGGGA GGACAGAAGAGTCAACACTCAAAAGTGCAGGAAGTGATTAGTCCCGTCCG TTTGTGGAATATTGTTTCGGGGGGCGGCCTGTTCGAGGAATCCACGCTAC AGCACACTGGCCCATGCATGTGTTTTAGCCTCTTGCGGTTGGGTTGTTGT GGTCAAGAGAAGAAAGGGTTTCGAACGAGGCGTGGGCAGAAGGGCACGAC AGACAGTCGAGGCTATCTGCCGGACCTGTTGTTTTTAGTTTTTGGGTTGC TCTAAATCGAGACCAGCGCGGGCAGAGAGAACAGTCGACCTTGAGTTTGT GCGGTTATTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6193:756..5016-

>mRNA_Ecto-sp13_S_contig6193.16904.1 ID=mRNA_Ecto-sp13_S_contig6193.16904.1|Name=mRNA_Ecto-sp13_S_contig6193.16904.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6193:756..5016- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAAAGAGGAGTGCCCCGTGTGCCTCGAGGAGCCCATGTCCTCGCC
CGCTCTCACGCCGTGCGCGCACCTGATATGCTTTGATTGCCTTCGAGACT
GCCTGCGGAGAGAAGCTTGCTGCCCGGTTTGCCGGTCGCCAATGACGACC
GCAGACATCATTGAAGTGTCCGGCTCACAACCGAGGGGAAAAGCCGTAGC
CGCCCCCCGCAAGCCCCCACCTTCGATTCCTTCGGAAGGAGCGGCGGCCA
CAGGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGGCGGAGCGGGA
GCGCGGACTAAGCCGGCACCATGCGACACCGGCGGTGGCGGCGGCGGCGG
GGGGTGGATTGGGAGCACCAAGCTAGCAAGATTGGAGCTTGAGCTGCGAC
AGATGCGAAAGAAGACACCCGGCGCTAAGGCCGTCGTCTTCTCTCAGTGG
ACTCACATGCTGGATCTTGCCGAGGCTAGCATTGCCAGGGGAGGGTGGAC
GTTCCGAAGGCTGGACGGAGCCATGTCCCAACAACAGCGGGAGTCCGCTC
TCAAGGGCTTCGCGACGGACGAGAGCATCACCGTGATGCTGGTCTCGCTC
AAGGCCGGCGGTGTCGGCCTCAACCTTACGGCAGCATCGACGGTCATCCT
CCTCGACCCTTGGTGGAACCCGGCGGTCGAAGAGCAAGCGATCGACCGAA
TCCACCGCCTGGGCCAGCTGAATGAAGTCAGCGTCAAGCGGTTTGTCGTG
TCGGGAACCGTCGAGGACAAAATGCTCGCGCTTCAGGAAGTGAAGGGCAG
AATGGCCAAGAACGCCCTCGCCGCCGGGTCCGTGAACGAGAGCCAAAAGC
TCAGAGTCGAGGACCTCATACAGTTCTTCAAGTGA
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