mRNA_Ecto-sp13_S_contig61922.16903.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61922.16903.1
Unique NamemRNA_Ecto-sp13_S_contig61922.16903.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61922.16903.1 vs. uniprot
Match: A0A4S4DTL7_CAMSI (Importin subunit alpha n=6 Tax=Ericales TaxID=41945 RepID=A0A4S4DTL7_CAMSI)

HSP 1 Score: 101 bits (252), Expect = 1.810e-23
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 QVIINFNALPWLLNLLSS-SKKGIRKEACWTISNITAGNKEQIQAVIDANIIPPLIQLLSNAEFD 192
            Q IIN  ALP+LLNLL+S SKK I+KEACWTISNITAGNKEQIQAVI+ANII PL+ LL NAEFD
Sbjct:  322 QCIINHQALPYLLNLLTSTSKKSIKKEACWTISNITAGNKEQIQAVIEANIIGPLVHLLQNAEFD 386
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BLAST of mRNA_Ecto-sp13_S_contig61922.16903.1 vs. uniprot
Match: A0A1D1Y9X0_9ARAE (Importin subunit alpha-1b (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Y9X0_9ARAE)

HSP 1 Score: 93.2 bits (230), Expect = 6.830e-23
Identity = 49/68 (72.06%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 QVIINFNALPWLLNLLSSS-KKGIRKEACWTISNITAGNKEQIQAVIDANIIPPLIQLLSNAEFDIRK 201
            Q II+  ALP LLNLL+ + KK I+KEACWTISNITAGNKEQIQAVI+A II PL+ LL  AEFDI+K
Sbjct:   48 QHIIDHQALPCLLNLLTHNHKKSIKKEACWTISNITAGNKEQIQAVINAAIIAPLVHLLQTAEFDIKK 115
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BLAST of mRNA_Ecto-sp13_S_contig61922.16903.1 vs. uniprot
Match: A0A2J6KLC2_LACSA (Uncharacterized protein n=1 Tax=Lactuca sativa TaxID=4236 RepID=A0A2J6KLC2_LACSA)

HSP 1 Score: 96.7 bits (239), Expect = 7.270e-23
Identity = 50/65 (76.92%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 QVIINFNALPWLLNLLSSS-KKGIRKEACWTISNITAGNKEQIQAVIDANIIPPLIQLLSNAEFD 192
            Q IIN  ALP LLNLL+++ KK I+KEACWTISNITAGNKEQIQ VI+ANII PLI LL NAEFD
Sbjct:   96 QYIINHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNKEQIQTVIEANIIGPLIHLLQNAEFD 160
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BLAST of mRNA_Ecto-sp13_S_contig61922.16903.1 vs. uniprot
Match: UPI001C68ECFF (importin subunit alpha-1a-like n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI001C68ECFF)

HSP 1 Score: 96.7 bits (239), Expect = 1.020e-22
Identity = 50/65 (76.92%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 QVIINFNALPWLLNLLSSS-KKGIRKEACWTISNITAGNKEQIQAVIDANIIPPLIQLLSNAEFD 192
            Q IIN  ALP LLNLL+++ KK I+KEACWTISNITAGNKEQIQ VI+ANII PLI LL NAEFD
Sbjct:  159 QYIINHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNKEQIQTVIEANIIGPLIHLLQNAEFD 223
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BLAST of mRNA_Ecto-sp13_S_contig61922.16903.1 vs. uniprot
Match: A0A2J6KPP8_LACSA (Uncharacterized protein n=3 Tax=Lactuca sativa TaxID=4236 RepID=A0A2J6KPP8_LACSA)

HSP 1 Score: 96.7 bits (239), Expect = 1.860e-22
Identity = 50/65 (76.92%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 QVIINFNALPWLLNLLSSS-KKGIRKEACWTISNITAGNKEQIQAVIDANIIPPLIQLLSNAEFD 192
            Q IIN  ALP LLNLL+++ KK I+KEACWTISNITAGNKEQIQ VI+ANII PLI LL NAEFD
Sbjct:  218 QYIINHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNKEQIQTVIEANIIGPLIHLLQNAEFD 282
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BLAST of mRNA_Ecto-sp13_S_contig61922.16903.1 vs. uniprot
Match: UPI00201ADF00 (importin subunit alpha-1b isoform X2 n=1 Tax=Ricinus communis TaxID=3988 RepID=UPI00201ADF00)

HSP 1 Score: 97.8 bits (242), Expect = 3.580e-22
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 QVIINFNALPWLLNLLSSS-KKGIRKEACWTISNITAGNKEQIQAVIDANIIPPLIQLLSNAEFD 192
            Q IIN  ALP LLNLL+++ KK I+KEACWTISNITAGNKEQIQAVI+ANII PL+ LL NAEFD
Sbjct:  269 QCIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKEQIQAVIEANIIGPLVHLLENAEFD 333
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BLAST of mRNA_Ecto-sp13_S_contig61922.16903.1 vs. uniprot
Match: UPI0010A3BC35 (importin subunit alpha-2-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A3BC35)

HSP 1 Score: 97.4 bits (241), Expect = 4.190e-22
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 QVIINFNALPWLLNLLSSS-KKGIRKEACWTISNITAGNKEQIQAVIDANIIPPLIQLLSNAEFD 192
            QVIIN  ALP LLNLL+++ KK I+KEACWTISNITAGNK+QIQAV++ANII PL+ LL NAEFD
Sbjct:  237 QVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVMEANIIGPLVHLLQNAEFD 301
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BLAST of mRNA_Ecto-sp13_S_contig61922.16903.1 vs. uniprot
Match: B9RFG6_RICCO (Importin subunit alpha n=39 Tax=fabids TaxID=91835 RepID=B9RFG6_RICCO)

HSP 1 Score: 97.8 bits (242), Expect = 4.200e-22
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 QVIINFNALPWLLNLLSSS-KKGIRKEACWTISNITAGNKEQIQAVIDANIIPPLIQLLSNAEFD 192
            Q IIN  ALP LLNLL+++ KK I+KEACWTISNITAGNKEQIQAVI+ANII PL+ LL NAEFD
Sbjct:  320 QCIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKEQIQAVIEANIIGPLVHLLENAEFD 384
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BLAST of mRNA_Ecto-sp13_S_contig61922.16903.1 vs. uniprot
Match: A0A059B3T6_EUCGR (Importin subunit alpha n=3 Tax=malvids TaxID=91836 RepID=A0A059B3T6_EUCGR)

HSP 1 Score: 97.8 bits (242), Expect = 4.200e-22
Identity = 50/65 (76.92%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 QVIINFNALPWLLNLLSSS-KKGIRKEACWTISNITAGNKEQIQAVIDANIIPPLIQLLSNAEFD 192
            Q IIN  ALP LLNLL+ + KK I+KEACWTISNITAGNKEQIQAVI+ANII PL+ LL NAEFD
Sbjct:  321 QCIINHQALPCLLNLLTGNYKKSIKKEACWTISNITAGNKEQIQAVIEANIIAPLVHLLQNAEFD 385
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BLAST of mRNA_Ecto-sp13_S_contig61922.16903.1 vs. uniprot
Match: A0A7J8T3N8_GOSDV (Uncharacterized protein (Fragment) n=1 Tax=Gossypium davidsonii TaxID=34287 RepID=A0A7J8T3N8_GOSDV)

HSP 1 Score: 94.4 bits (233), Expect = 6.430e-22
Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 QVIINFNALPWLLNLLSSS-KKGIRKEACWTISNITAGNKEQIQAVIDANIIPPLIQLLSNAEF 189
            Q IIN   LP LLNLL+++ KK I+KEACWTISNITAGNKEQIQAVI+ANII PL+ LL NAEF
Sbjct:   52 QCIINHQVLPCLLNLLTNNFKKSIKKEACWTISNITAGNKEQIQAVIEANIISPLVHLLQNAEF 115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61922.16903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4S4DTL7_CAMSI1.810e-2380.00Importin subunit alpha n=6 Tax=Ericales TaxID=4194... [more]
A0A1D1Y9X0_9ARAE6.830e-2372.06Importin subunit alpha-1b (Fragment) n=1 Tax=Anthu... [more]
A0A2J6KLC2_LACSA7.270e-2376.92Uncharacterized protein n=1 Tax=Lactuca sativa Tax... [more]
UPI001C68ECFF1.020e-2276.92importin subunit alpha-1a-like n=1 Tax=Lactuca sat... [more]
A0A2J6KPP8_LACSA1.860e-2276.92Uncharacterized protein n=3 Tax=Lactuca sativa Tax... [more]
UPI00201ADF003.580e-2276.92importin subunit alpha-1b isoform X2 n=1 Tax=Ricin... [more]
UPI0010A3BC354.190e-2275.38importin subunit alpha-2-like n=1 Tax=Prosopis alb... [more]
B9RFG6_RICCO4.200e-2276.92Importin subunit alpha n=39 Tax=fabids TaxID=91835... [more]
A0A059B3T6_EUCGR4.200e-2276.92Importin subunit alpha n=3 Tax=malvids TaxID=91836... [more]
A0A7J8T3N8_GOSDV6.430e-2275.00Uncharacterized protein (Fragment) n=1 Tax=Gossypi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61922contigEcto-sp13_S_contig61922:440..667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start0
Seed ortholog score99.0
Seed ortholog evalue1e-18
Seed eggNOG ortholog3641.EOY11600
Model size228
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005737,GO:0005829,GO:0006606,GO:0006607,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0017038,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034504,GO:0034613,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594
Exons1
EggNOG free text desc.importin subunit
EggNOG OGs37HJI@33090,3GAGW@35493,COG5064@1,KOG0166@2759
Cds size228
COG Functional cat.U
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463862.5007136-CDS-Ecto-sp13_S_contig61922:439..6671681463862.5007136-CDS-Ecto-sp13_S_contig61922:439..667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61922 440..667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61922.16903.1prot_Ecto-sp13_S_contig61922.16903.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61922 440..667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61922.16903.1

>prot_Ecto-sp13_S_contig61922.16903.1 ID=prot_Ecto-sp13_S_contig61922.16903.1|Name=mRNA_Ecto-sp13_S_contig61922.16903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
QVIINFNALPWLLNLLSSSKKGIRKEACWTISNITAGNKEQIQAVIDANI
IPPLIQLLSNAEFDIRKVRGVPRYR*
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mRNA from alignment at Ecto-sp13_S_contig61922:440..667+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61922.16903.1 ID=mRNA_Ecto-sp13_S_contig61922.16903.1|Name=mRNA_Ecto-sp13_S_contig61922.16903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61922:440..667+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCATCATCAACTTCAACGCGTTGCCGTGGCTGCTGAACCTGCTGAG
CTCGTCCAAGAAGGGAATCCGGAAGGAGGCTTGTTGGACCATCTCCAACA
TCACCGCCGGCAATAAAGAGCAGATCCAGGCCGTCATCGACGCGAACATC
ATCCCCCCGCTCATCCAGCTCCTGTCCAACGCGGAGTTCGACATCCGCAA
GGTGCGTGGGGTGCCACGGTACCGATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61922:440..667+

>mRNA_Ecto-sp13_S_contig61922.16903.1 ID=mRNA_Ecto-sp13_S_contig61922.16903.1|Name=mRNA_Ecto-sp13_S_contig61922.16903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61922:440..667+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCATCATCAACTTCAACGCGTTGCCGTGGCTGCTGAACCTGCTGAG
CTCGTCCAAGAAGGGAATCCGGAAGGAGGCTTGTTGGACCATCTCCAACA
TCACCGCCGGCAATAAAGAGCAGATCCAGGCCGTCATCGACGCGAACATC
ATCCCCCCGCTCATCCAGCTCCTGTCCAACGCGGAGTTCGACATCCGCAA
GGTGCGTGGGGTGCCACGGTACCGATAG
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