prot_Ecto-sp13_S_contig61919.16901.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig61919.16901.1
Unique Nameprot_Ecto-sp13_S_contig61919.16901.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length104
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61919.16901.1 vs. uniprot
Match: D7FME9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME9_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.980e-25
Identity = 55/84 (65.48%), Postives = 61/84 (72.62%), Query Frame = 0 
Query:   11 LGPLPAVILLCWYLCRSCVDLCRQPARRRTQRAVDRLRRFPDHKRWRARGWLIMLRGRHQRLLARSKGWPIRLRKLERYNMPNI 94
            LGPLP  ILLCWY     V + RQ AR   +RAV+RLR FP  +RW A GWLIM+R RHQR LAR KGWPIRLRKLER+N  NI
Sbjct:  171 LGPLPLAILLCWYFHHFYVVVPRQAAR---ERAVERLRTFPGQRRWHAGGWLIMIRARHQRFLARPKGWPIRLRKLERFNEANI 251
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BLAST of mRNA_Ecto-sp13_S_contig61919.16901.1 vs. uniprot
Match: D7FMF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF1_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.010e-6
Identity = 24/31 (77.42%), Postives = 25/31 (80.65%), Query Frame = 0 
Query:   64 MLRGRHQRLLARSKGWPIRLRKLERYNMPNI 94
            MLR RHQR L RS GWP+RLRKLERYN  NI
Sbjct:    1 MLRARHQRSLGRSTGWPVRLRKLERYNKANI 31
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61919.16901.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FME9_ECTSI1.980e-2565.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMF1_ECTSI1.010e-677.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..104
NoneNo IPR availableTMHMMTMhelixcoord: 4..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61919contigEcto-sp13_S_contig61919:3..680 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61919.16901.1mRNA_Ecto-sp13_S_contig61919.16901.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig61919 3..680 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig61919.16901.1 ID=prot_Ecto-sp13_S_contig61919.16901.1|Name=mRNA_Ecto-sp13_S_contig61919.16901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
FFPLVFLFCVLGPLPAVILLCWYLCRSCVDLCRQPARRRTQRAVDRLRRF
PDHKRWRARGWLIMLRGRHQRLLARSKGWPIRLRKLERYNMPNIAKYATR
NFMG
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