mRNA_Ecto-sp13_S_contig61919.16901.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61919.16901.1
Unique NamemRNA_Ecto-sp13_S_contig61919.16901.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61919.16901.1 vs. uniprot
Match: D7FME9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME9_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.980e-25
Identity = 55/84 (65.48%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:   31 LGPLPAVILLCWYLCRSCVDLCRQPARRRTQRAVDRLRRFPDHKRWRARGWLIMLRGRHQRLLARSKGWPIRLRKLERYNMPNI 282
            LGPLP  ILLCWY     V + RQ AR   +RAV+RLR FP  +RW A GWLIM+R RHQR LAR KGWPIRLRKLER+N  NI
Sbjct:  171 LGPLPLAILLCWYFHHFYVVVPRQAAR---ERAVERLRTFPGQRRWHAGGWLIMIRARHQRFLARPKGWPIRLRKLERFNEANI 251
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BLAST of mRNA_Ecto-sp13_S_contig61919.16901.1 vs. uniprot
Match: D7FMF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF1_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.010e-6
Identity = 24/31 (77.42%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:  190 MLRGRHQRLLARSKGWPIRLRKLERYNMPNI 282
            MLR RHQR L RS GWP+RLRKLERYN  NI
Sbjct:    1 MLRARHQRSLGRSTGWPVRLRKLERYNKANI 31
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61919.16901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FME9_ECTSI1.980e-2565.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMF1_ECTSI1.010e-677.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61919contigEcto-sp13_S_contig61919:3..680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size312
Hectar predicted targeting categorysignal peptide
Exons2
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463862.315653-CDS-Ecto-sp13_S_contig61919:2..2081681463862.315653-CDS-Ecto-sp13_S_contig61919:2..208Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61919 3..208 -
1681463862.3275516-CDS-Ecto-sp13_S_contig61919:574..6801681463862.3275516-CDS-Ecto-sp13_S_contig61919:574..680Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61919 575..680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61919.16901.1prot_Ecto-sp13_S_contig61919.16901.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61919 3..680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61919.16901.1

>prot_Ecto-sp13_S_contig61919.16901.1 ID=prot_Ecto-sp13_S_contig61919.16901.1|Name=mRNA_Ecto-sp13_S_contig61919.16901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
FFPLVFLFCVLGPLPAVILLCWYLCRSCVDLCRQPARRRTQRAVDRLRRF
PDHKRWRARGWLIMLRGRHQRLLARSKGWPIRLRKLERYNMPNIAKYATR
NFMG
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mRNA from alignment at Ecto-sp13_S_contig61919:3..680-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61919.16901.1 ID=mRNA_Ecto-sp13_S_contig61919.16901.1|Name=mRNA_Ecto-sp13_S_contig61919.16901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=678bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61919:3..680- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTTTCCACTGGTCTTTCTGTTCTGCGTTCTGGGGCCCTTGCCTGCGGT
GATCCTGCTCTGCTGGTATCTCTGCCGTTCCTGCGTAGACCTCTGCCGAC
AGCCTGGTGAGTAAGGTGGAAGCGGTCGTTGTTCAAGGTTATACGTAGAA
GGCACGGTCAGTCCTCCATCAAGCTACAGGCAGGTGTTCACTCGTTGAAC
GCGGTGACAACCTTCCTTTGGTTTCAACCGAAATGCCAACGATTTATGTC
ATTCTCTCTCTTCAATAAAACTCACAGAGCTGGCGGCAAGGGGCGGCCTC
TGTCGAAAAGGTGTGATGTACCTCGAAGGAATCGTTTGTATGCACCGTCA
TCGTCTGTGGTTCAGTTTTCCCTCGCCATCAACAGTCTAAAAAGGACGTT
TGTGCGCATTCGTTCCCGAAACACCCATGATATCACTCCCACGGTTGCAT
TTCCTTCTTGTTTGTGTCGCAGCGAGGAGAAGGACACAGCGAGCGGTGGA
TCGCTTGCGAAGATTTCCGGATCATAAAAGGTGGCGCGCGCGGGGCTGGC
TGATCATGCTGCGGGGGCGTCATCAAAGGCTCTTGGCAAGGTCCAAGGGC
TGGCCTATTAGGTTGCGGAAGCTCGAACGGTACAACATGCCCAACATCGC
CAAATATGCCACGAGGAATTTTATGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61919:3..680-

>mRNA_Ecto-sp13_S_contig61919.16901.1 ID=mRNA_Ecto-sp13_S_contig61919.16901.1|Name=mRNA_Ecto-sp13_S_contig61919.16901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61919:3..680- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTTTCCACTGGTCTTTCTGTTCTGCGTTCTGGGGCCCTTGCCTGCGGT
GATCCTGCTCTGCTGGTATCTCTGCCGTTCCTGCGTAGACCTCTGCCGAC
AGCCTGCGAGGAGAAGGACACAGCGAGCGGTGGATCGCTTGCGAAGATTT
CCGGATCATAAAAGGTGGCGCGCGCGGGGCTGGCTGATCATGCTGCGGGG
GCGTCATCAAAGGCTCTTGGCAAGGTCCAAGGGCTGGCCTATTAGGTTGC
GGAAGCTCGAACGGTACAACATGCCCAACATCGCCAAATATGCCACGAGG
AATTTTATGGGC
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