mRNA_Ecto-sp13_S_contig6191.16900.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6191.16900.1 vs. uniprot
Match: D7FU55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU55_ECTSI) HSP 1 Score: 166 bits (419), Expect = 1.750e-46 Identity = 110/182 (60.44%), Postives = 121/182 (66.48%), Query Frame = 1
Query: 76 PPDSMEALKNLSAKLSGRKLLLMPKTSASGVFSREFLTKDLMKLYARVADTTASLALACVSLRFGGKTPALLATLLTGARALSVASAASTSCLWAETTTAD---IGSS---GTTSVPRDRTDEATWTLLGWITNIGAATAVAWIVWLSALWVLATLAIWARSMSIRRRSGSSGSPNTQAVGA 603
PP ++ KN+ K SGRKLLLM KDL K+YA V TTAS + SLRFGGKTPALLA+L+TGA A S SAASTS L A TT+AD IGS GTTSVP DRTD+ATWTLL WI +IG A VAWIVWLS LWVL L +WA SMS RR GSSGSPN QA GA
Sbjct: 53 PPGWTKSFKNVFTKSSGRKLLLM--------------AKDLEKMYAYVEGTTASALIFYGSLRFGGKTPALLASLVTGAAASSFVSAASTSGLSAGTTSADMSDIGSGKKGGTTSVPGDRTDDATWTLLVWIISIGVAMVVAWIVWLSPLWVLLNLLVWAESMSRSRRRGSSGSPNIQATGA 220
BLAST of mRNA_Ecto-sp13_S_contig6191.16900.1 vs. uniprot
Match: A0A6H5JVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI1_9PHAE) HSP 1 Score: 157 bits (396), Expect = 2.970e-42 Identity = 103/170 (60.59%), Postives = 113/170 (66.47%), Query Frame = 1
Query: 79 PDSMEALKNLSAKLSGRKLLLMPKTSASGVFSREFLTKDLMKLYARVADTTASLALACVSLRFGGKTPALLATLLTGARALSVASAASTSCLWAETTTADIGSSGTTSVPR-DRTDEATWTLLGWITNIGAATAVAWIVWLSALWVLATLAIWARSMSIRRRSGSSGSPN 585
PDSMEA KN S K+S + VFSR LTK KLYA V TTA LAL SLR GGK PALLATL+ A ALSV SAA+TSCL A TTAD GSSGTTSV D TD ATWTL W+ NIGAATA+A +W+ ALWVL TLA WAR S R +G+S SPN
Sbjct: 115 PDSMEAAKNFSTKISDGR-----------VFSRGLLTKGFEKLYAHVTVTTAFLALGYASLRIGGKAPALLATLVMKAGALSVVSAATTSCLSAGATTADTGSSGTTSVLHGDVTDNATWTLFSWMANIGAATALARSMWVFALWVLVTLAFWARRRSRSRNNGASVSPN 273
BLAST of mRNA_Ecto-sp13_S_contig6191.16900.1 vs. uniprot
Match: D7FNC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNC7_ECTSI) HSP 1 Score: 140 bits (354), Expect = 1.180e-36 Identity = 98/170 (57.65%), Postives = 109/170 (64.12%), Query Frame = 1
Query: 79 PDSMEALKNLSAKLSGRKLLLMPKTSASGVFSREFLTKDLMKLYARVADTTASLALACVS-LRFGGKTPALLATLLTGARALSVASAASTSCLWAETTTADIGSSGTTSVPRDRTDEATWTLLGWITNIGAATAVAWIVWLSALWVLATLAIWARSMSIRRRSGSSGSPN 585
PDS EA+KN K TSA VFSR LTK KLY ADTTAS AL S LRFGG TPALLATL+T A LSVASAA+TSCL A TT ADIGS TT VP D D+ATW L + G AT +A I+ +SAL VLATLA WA S S R++G+S SPN
Sbjct: 89 PDSTEAVKNFFTK-----------TSAGRVFSRGLLTKGFEKLYTHAADTTASFALGYFSSLRFGGNTPALLATLVTAAGTLSVASAATTSCLSAGTTVADIGSRATTDVPGDLADDATWALFSLLMKFGGATVLARIMQISALSVLATLAFWATSRS--RKNGASVSPN 245
BLAST of mRNA_Ecto-sp13_S_contig6191.16900.1 vs. uniprot
Match: A0A6H5J5K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5K9_9PHAE) HSP 1 Score: 133 bits (334), Expect = 3.120e-33 Identity = 82/126 (65.08%), Postives = 96/126 (76.19%), Query Frame = 1
Query: 214 RVADTTASLALACVSLRFGGKTPALLATLLTGARALSVASAASTSCLWAETTTADIGSSGTTSVPRDRTDEATWTLLGWITNIGAATAVAWIVWLSALWVLATLAIWAR--SMSIRRRSGSSGSPN 585
+V DTTASLAL SLR GGKTPALL+TL+TGA ALSV +AA+TSC A T+A+IGSS TTSVP D D+ATW L WITNIGAATA+AW + + ALWVLATLA WAR + S R+ +S SPN
Sbjct: 175 KVCDTTASLALRYASLRLGGKTPALLSTLVTGAGALSVVAAATTSCFSAGMTSAEIGSSKTTSVPGDLADDATWALFSWITNIGAATALAWSMRVFALWVLATLACWARRRNRSRSRKKRASVSPN 300
BLAST of mRNA_Ecto-sp13_S_contig6191.16900.1 vs. uniprot
Match: A0A6H5KZU3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZU3_9PHAE) HSP 1 Score: 102 bits (253), Expect = 1.440e-22 Identity = 73/126 (57.94%), Postives = 82/126 (65.08%), Query Frame = 1
Query: 76 PPDSMEALKNLSAKLSGRKLLLMPKTSASGVFSREFLTKDLMKLYARVADTTASLALACVSLRFGGKTPALLATLLTGARALS-VASAASTSCLWAETTTAD---IGSSGTTSVPRDRTDEATWTL 441
P ++ KN+ K SGRKLLLM KDL K+YA V DTTA+ + SLRFGGKTPALLA+L+TGA A S V SA STS L TT+AD IGSSGTTSVP DRTDEATWTL
Sbjct: 183 PSGWTKSFKNVFTKSSGRKLLLM--------------AKDLEKMYAYVEDTTAAALVFYASLRFGGKTPALLASLVTGAAAASSVVSANSTSSLSPGTTSADMSDIGSSGTTSVPGDRTDEATWTL 294 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6191.16900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6191.16900.1 >prot_Ecto-sp13_S_contig6191.16900.1 ID=prot_Ecto-sp13_S_contig6191.16900.1|Name=mRNA_Ecto-sp13_S_contig6191.16900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp MEALKNLSAKLSGRKLLLMPKTSASGVFSREFLTKDLMKLYARVADTTASback to top mRNA from alignment at Ecto-sp13_S_contig6191:3544..8139+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6191.16900.1 ID=mRNA_Ecto-sp13_S_contig6191.16900.1|Name=mRNA_Ecto-sp13_S_contig6191.16900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4596bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6191:3544..8139+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6191:3544..8139+ >mRNA_Ecto-sp13_S_contig6191.16900.1 ID=mRNA_Ecto-sp13_S_contig6191.16900.1|Name=mRNA_Ecto-sp13_S_contig6191.16900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6191:3544..8139+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |