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Homology
BLAST of mRNA_Ecto-sp13_S_contig619.16897.1 vs. uniprot
Match: A0A6H5JLI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLI6_9PHAE) HSP 1 Score: 739 bits (1908), Expect = 1.940e-257 Identity = 449/511 (87.87%), Postives = 462/511 (90.41%), Query Frame = 3
Query: 63 MLLHRRKCEVRVCQARHLVPKGRKRNGDDKPAVLVADAVWALMSIDGKHNTTESCRNIEHPSWERVAVFDLNLCRAAEGIARGAPAKPPRDSNPTAGAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKRSPSSPLNPFALAEAETQSLNPFASNFVPPAAAPLSPPXXAAASPRSKSPCXXXXXXXXPVLRASMVLHLRMLHGRLRSKEVLGDVAVDLVPLIRSGGDRLATDRLEWLGEEDGAPLLPLDDGDAGAITTPXXXPLVAVDTWVSLRQGTAELRVQILIKPPREPASSNVGFQRAQVGGDEAWAAAFEALSADGLVKTSLDLEQRSLDERLLDVQETYDFSAGSGYREGKPDEDEGARNLDQGKEGDPKTPEWPACEPEAARLRRDMQLAALRDRRQSIAWAEKLGSSADLRDALRRPPPFSARSSQGPAAGGKRAKPTAAPSPFAASPMFRDLKELVAQGIPPALRSANHPPSAGAAGARS 1595
MLLHRR+CEVRVCQARHLVPKGRKRNGDDKPAVLVADAVWALMSIDG HNTTESCRNIEHPSWERVAVFDLNLCRAAEGIARGAP KPPRDSNPTAGA XXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXX S LNPFA+AEAETQ FASNFVPPAA PLS P AASPRSKS C VLRASMVLHLR+LHGRLRSKEVLGDVAVDLVPL+RSGGDRLATDRLEWL EEDGAPLLPL +GDAG ITT P+VAVDTWVSLRQGTAELRVQIL+K PREPASSNVG QRAQVGGDEAWAAAF+ALSADGLVKTSLDLEQRSLDERLL+VQETYDFSAGSGYREGKPDEDEGAR+LDQGKEGDPKTPEWPACE EAARLRRDMQLAALRDRRQSIAWAEKLGSSADLR+ALRRPP FSARSSQGPAAGGKRAK TA P+PFAASP+FRDLKELVAQGIPPALRSANHPPSAGA GARS
Sbjct: 1 MLLHRRQCEVRVCQARHLVPKGRKRNGDDKPAVLVADAVWALMSIDGVHNTTESCRNIEHPSWERVAVFDLNLCRAAEGIARGAPVKPPRDSNPTAGAXXXXXXXXXXXXXXXXXFERPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS----LNPFAVAEAETQXXXXFASNFVPPAATPLSSPPPQAASPRSKSSCPPAAAAW--VLRASMVLHLRVLHGRLRSKEVLGDVAVDLVPLLRSGGDRLATDRLEWLEEEDGAPLLPLGNGDAGVITT-HPPPVVAVDTWVSLRQGTAELRVQILMKTPREPASSNVGSQRAQVGGDEAWAAAFDALSADGLVKTSLDLEQRSLDERLLEVQETYDFSAGSGYREGKPDEDEGARDLDQGKEGDPKTPEWPACESEAARLRRDMQLAALRDRRQSIAWAEKLGSSADLREALRRPPSFSARSSQGPAAGGKRAKATAVPTPFAASPVFRDLKELVAQGIPPALRSANHPPSAGATGARS 504
BLAST of mRNA_Ecto-sp13_S_contig619.16897.1 vs. uniprot
Match: A0A836CAD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAD2_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 1.410e-8 Identity = 91/371 (24.53%), Postives = 132/371 (35.58%), Query Frame = 3
Query: 81 KCEVRVCQARHLVP-----KGRKRNGDD-----------------KPAVLVADAVWALMSIDGKHNTTESCRNIEHPSWERVAVFDLNLCRAAEGIARGAPAKPPRDSNPTAGAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKRSPSSPLNPFALAEAETQSL--NPFASNFVPPAAAP----LSPPXXAAASPRSKSPCXXXXXXXXPVLRASMVLHLRMLHGRLRSKEVLGDVAVDLVPLIRSGGDRLATDRLEWL--------GEED-----GAPLLPL-------------------DDGDAGAITTPXXXPLVAVDTWVSLRQGTAELRVQILIKPPREPASS 1013
+ EVRV + RHL G GDD + L+ + +++ KH TE C +++ P W++VA F + C A P + P+A A P AE Q L P + PPAAA LS A A+P + + LHLR+ L SK++LG+V VD+ L+ +GG L TDR+ + GEED GA ++PL + A A+ + +AVDTWV+LRQG ELRVQ+L++P A++
Sbjct: 6 RVEVRVAEGRHLFRAVSRGSGVPEAGDDGSERKKYSASAGAATSGRAPPLLNATLCVSITLGDKHVLTEQCADLQRPVWDKVASFTYDPCPPPADAAAA-----PHEVEPSAAAVEMTDMFRAMGL------------------------------------------------PSRAAEPHDQQLPLEPHSGKPSPPAAAAGLQQLSASATAGAAPTADAHARRR------------ALHLRVFSDSLVSKDLLGEVTVDVAALVATGGALLVTDRIGYTDSGGAGSRGEEDDGDSSGAFMVPLALAASPTPPRSHHSERVSANGAAAAAVASAVDFEPLAVDTWVALRQGDGELRVQVLVRPDPSAATA 311
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 1 |
| Model size | 1618 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-04_001230.1 |
| Cds size | 1554 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681463862.065087-CDS-Ecto-sp13_S_contig619:11540..11809 | 1681463862.065087-CDS-Ecto-sp13_S_contig619:11540..11809 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig619 11541..11809 - |
| 1681463862.0803204-CDS-Ecto-sp13_S_contig619:12766..12866 | 1681463862.0803204-CDS-Ecto-sp13_S_contig619:12766..12866 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig619 12767..12866 - |
| 1681463862.0961618-CDS-Ecto-sp13_S_contig619:13529..13738 | 1681463862.0961618-CDS-Ecto-sp13_S_contig619:13529..13738 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig619 13530..13738 - |
| 1681463862.115416-CDS-Ecto-sp13_S_contig619:14902..15878 | 1681463862.115416-CDS-Ecto-sp13_S_contig619:14902..15878 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig619 14903..15878 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681463862.12933-UTR-Ecto-sp13_S_contig619:15878..15940 | 1681463862.12933-UTR-Ecto-sp13_S_contig619:15878..15940 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig619 15879..15940 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig619.16897.1 >prot_Ecto-sp13_S_contig619.16897.1 ID=prot_Ecto-sp13_S_contig619.16897.1|Name=mRNA_Ecto-sp13_S_contig619.16897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=518bp
MLLHRRKCEVRVCQARHLVPKGRKRNGDDKPAVLVADAVWALMSIDGKHN TTESCRNIEHPSWERVAVFDLNLCRAAEGIARGAPAKPPRDSNPTAGAAV ASSSASSSSRNSSATFERPSAVAAAVPARKNKAAAAAAAAAATPAAAAVK RSPSSPLNPFALAEAETQSLNPFASNFVPPAAAPLSPPPPAAASPRSKSP CPPAPAAAAPVLRASMVLHLRMLHGRLRSKEVLGDVAVDLVPLIRSGGDR LATDRLEWLGEEDGAPLLPLDDGDAGAITTPPPPPLVAVDTWVSLRQGTA ELRVQILIKPPREPASSNVGFQRAQVGGDEAWAAAFEALSADGLVKTSLD LEQRSLDERLLDVQETYDFSAGSGYREGKPDEDEGARNLDQGKEGDPKTP EWPACEPEAARLRRDMQLAALRDRRQSIAWAEKLGSSADLRDALRRPPPF SARSSQGPAAGGKRAKPTAAPSPFAASPMFRDLKELVAQGIPPALRSANH PPSAGAAGARSPAAGAAG back to topmRNA from alignment at Ecto-sp13_S_contig619:11541..15940- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig619.16897.1 ID=mRNA_Ecto-sp13_S_contig619.16897.1|Name=mRNA_Ecto-sp13_S_contig619.16897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4400bp|location=Sequence derived from alignment at Ecto-sp13_S_contig619:11541..15940- (Ectocarpus species13 EcNAP12_S_4_19m) GACAACCCCTTCAACAACAACGTGCAGCCCTTCCAAAGGCCTCCTGCACC
TGCCCATGACCAATGCTTCTGCACCGGAGGAAATGCGAGGTGCGAGTATG
CCAAGCTCGACATCTGGTTCCCAAGGGCAGGAAGAGGAACGGAGACGACA
AGCCTGCTGTGCTGGTAGCAGACGCCGTCTGGGCGCTGATGAGCATCGAC
GGCAAACACAACACAACTGAGAGCTGCCGGAACATCGAACATCCCTCGTG
GGAGCGGGTAGCCGTCTTCGACCTCAACCTCTGCCGTGCTGCTGAGGGGA
TTGCAAGGGGCGCCCCAGCAAAGCCTCCAAGAGACTCGAACCCCACAGCG
GGGGCGGCGGTCGCTTCTTCCTCCGCATCCTCTTCCTCCCGGAATTCAAG
TGCAACTTTTGAACGGCCGAGTGCCGTTGCTGCAGCAGTACCTGCTAGGA
AAAACAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACACCCGCCGCT
GCTGCTGTCAAGCGATCGCCGTCGTCACCCCTCAACCCTTTCGCGTTGGC
CGAAGCCGAGACTCAGTCACTGAACCCGTTCGCCTCCAACTTCGTGCCGC
CTGCGGCCGCGCCGCTGTCGCCGCCTCCCCCAGCAGCAGCATCCCCAAGA
TCTAAATCTCCTTGTCCGCCAGCGCCAGCGGCCGCAGCACCGGTTCTTCG
GGCATCCATGGTCTTGCATCTCCGCATGCTGCACGGCCGCCTGAGGTCGA
AAGAAGTGCTGGGCGATGTAGCCGTCGACTTGGTCCCGCTGATTCGGTCA
GGGGGCGACCGGCTGGCCACAGACCGCTTGGAGTGGTTGGGGGAAGAAGA
TGGCGCGCCGCTGCTGCCGCTGGATGATGGTGACGCCGGCGCGATTACTA
CTCCTCCTCCTCCTCCGCTTGTTGCGGTTGACACCTGGGTGTCTCTACGA
CAGGGCACCGCTGAGCTTCGGGTGCAGATACTGATAAAACCCCCAAGGGA
ACCCGCGAGCAGCAACGTCGGATTTCAACGTGCACAAGGTATGTACGTCT
GCACTTTTGCTCTGACCGCCAATCACAAAGAGTATCCGACGGGCAGTCAC
AGCTGCCGTAGATAAACTGGGCCACTAAGTCATTGGAGGCGCACACTTTG
TAGCAGAATTATGTGGTGCTGCTGTATATGGTCTGTTTCGACGTGAGTAC
TGAGCAACAGGTGAGTGGGGCGCACTCGAAGTAACATAAACTTCGGAACA
ATTGTTGCTGCTCTCTAGTTTTGCTTACACGCTCACAACTCTCCCCGCAA
TCTCTGTGTCAAGGATAAGCGAGAGTAGGAAAGCGTTTTTTCTGTTCCGT
ACGTTTAACGGCGAGCGGAATGGCCTAGACTATCTGTCGTTTACTTGTAT
TGGCGTGCGAAATCTTCGGGTCCATTTCATTTTCCTTTACCCTATTTTGG
GTTAGGGTTAGCCTGTGACCACGCGAATGGACGCCGTCAAGTGTTGGGCT
AGTACGGACAGAAGGAAGGTACTGGGGAGAGAGAACGGAACAGTTTTTTT
GTCAAGACAACAACAACGACGACAACAACAACAACAAGGGCCCGTTTTGT
TTGCAGCCGTCCAACACTTTGCGGCCTCAGAGAAACAAACCGGCATGGTC
TTGAGCGCCTCCCAGACACTTCGACTACATTGTAGTCGGTTTACACTCCA
CTGAGCGGTGTAAGCAAACCTCCAACTGCACTGGCGCTGGTGGACAGCGG
CGATAACCGCCTACCACGTTGGTGGCCACTTGCTGCTGTACGCTCCTGCT
GGTGTGTCTGTGCGTCTTCTCAAGTAGAACAATATGCGTAAGCCTCGACG
GCATTTGGTACAGCGAAAGAAAAGCATATCCTGTGTGGCCTGCCCTCGTG
TGTTATCCCGGCCGATGCACCCAGAAAATACGCCGAAACGTGTGAAGATT
GGATGTCGAGATTGCATGGGACAAGGACCCACACACAGTTGATAGCCTCT
AGGAAGAACTTTCCGTGTTTCAGCCGCATTGAGACTGACGTCTCTTCACT
GGTCAGCCGGTTAGCGCGGTCGATGCTAATCAGCGAAACATACACGAACC
GAACTGCTGTCACTTTTCTCATTGTTGAGCCGGTTAGCGCGGTCGACGTC
AATAGTTATAACACACACACGCACGAAACTCTTCCGCGCACTCCTGGTCT
AGTCGGCGGCGACGAAGCGTGGGCCGCTGCTTTCGAAGCCCTTTCGGCCG
ACGGGCTAGTCAAGACGAGTTTGGACCTGGAGCAGAGATCCCTCGACGAG
CGGCTTTTGGACGTCCAAGAGACGTACGACTTTAGCGCCGGGAGCGGGTA
CCGCGAAGGGAAGCCGGACGAGGACGAGGGGGCACGCAACCTGGATCAAG
GAAAAGAGGGGGTGAGAGAAGGAAGGCTCGTGTGTGGCTTTTTCCTGATG
CTGCTTTCCTCCTTGTTTGTGTGGAGGAAGGCTAGCGTCGTTATTTCCTT
TATGGTTGTGTGGAGTAAGAACACTGGCCCCGCCCCCTTTTGGTTGTAGA
GGAAAGCTACATAATAGTGTGTTTTAGGAAATGCACGTACAATCAGATGC
TACCACAGTCGAACGGACTGGGTTCACGTCTTTTCAGAGACACGAAACTG
TTTTTTTTTCCTACGCTCATTTGCTGAAAGCCATCGACCCCGGCGACCAA
GAGTGTGTTCAAGCTTTTTTTTATTTCTGCAGTTTGGACGTCTAGAACCC
AAGCAACGCTGCGTTATCTTAGGCTAGAGCCGCCTAGATACGGTTATCAT
AAGGTAGGAGAAAAAAAACGATATGCATCGGCTGGGCCACGACAATGAAC
ACCGCTTCCTGGACCGAGAGAAAGCAATAGCACACAGCGACGATTGCAAC
AGCATCATCAGCAACAGCAACAGCAGCAGCATCAGCAGTAACAACAACAT
CAGCAGCATAAATAACAGCAAACACAACATCAGCAGCAACAACAGCAACA
ACAACAAAGGCAATAAGATTTCTTGTGACAGTGCGATTGCTCCCCCCCCC
CCGGTTTGTGCGGCACAAACGTAGGACCCAAAGACACCGGAATGGCCGGC
GTGTGAGCCGGAGGCTGCGCGGCTCCGGAGAGATATGCAACTCGCGGCAT
TGAGAGATCGCCGGCAATCGATCGGTGAGACGAGGTGGTCGCGAGGAACT
CTCGACGGTTTCGAAGTTACCAAAAAAAGTGCCAGATGGAGAGGAGGTTA
TGTCGAAGCTGCTTTTCTGTAGATTCAGCAGGCATACTCCTTAACGGGAA
GTACCATTTGTTTAGCTTTCAAGCTGATGGAGTTTCAATTGCATAGGAAG
TTTTTGAAATGTTTTGTGTTGATTTTCAAAACTCGACCACTCCGCAGCAG
AAAGGGTGGCAGTGCCGAAAGCGGCGTCGTTGGAATAGTCCCGTCGAAAT
CTTTCCGAAAACGCATCAATGTGAGTTGGCACCCTCTTTTTAGAAAGTAC
GCATAATCTCACAGAAAGACCACCCGTTCGATACAATACCACAGCAGTCG
AAGGCGATGTGTTGAAGTCTTTACAGTGAGTGGGAAGAAACCGGTTCGAT
ACTGGGCTTATTTAGGGTCTGCTTTCTTCTGGAGGTAGTGGAGCTTCGAA
AATCGGTCCAGGAGGCGTGGTGTCGCGTGTCACCTACGGAACCCATCCGT
TTCCTATTCGGAGGTTGGAGAACATGTGGGGTCGCCCCCTCCTTCTGTCC
CTTGTTCGTTTTGAACAACAAGGTTTCGGGGCTGACCCTAGGCAGGTAGT
GGTGCAAATCGCCAAGCTGGTAGATCTTTATTGGTGCAGACGCATGCTGT
ATCGCCCAATTTAGAGGTGACTGCTAGTGATACATAACAGCTTCATCGCG
AAACTGCATGGTCTTGATTGGTGCAGACGCAGCAGCGTAAACGCTCCCTC
TCCGCAGGATGGGTGACAAAAAATGTGTAATATTATACCACCCTCCCCCC
CAAGTCCCCCCCCCCGTTTCCTTCCTCCAGCATGGGCAGAGAAACTGGGA
AGACGCTCGCTCTCTGCAGGATGGATGACAAAATACGTGTAACATTATGT
CACCCTCCCCCCCCCATTTTTCTTCCTCCAGCATGGGCAGAGAAACTGGG
CTCGTCAGCCGACTTGCGAGACGCCCTCCGGCGCCCGCCGCCGTTCAGCG
CGCGAAGCAGCCAGGGGCCAGCCGCCGGGGGCAAGAGGGCGAAGCCCACC
GCTGCGCCTTCTCCGTTCGCTGCTTCCCCTATGTTCCGAGACCTCAAGGA
GCTCGTGGCCCAAGGCATCCCGCCAGCGCTTCGGAGCGCTAATCATCCTC
CGTCCGCAGGCGCCGCCGGTGCCAGAAGTCCTGCGGCAGGGGCAGCGGGC
back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig619:11541..15940- >mRNA_Ecto-sp13_S_contig619.16897.1 ID=mRNA_Ecto-sp13_S_contig619.16897.1|Name=mRNA_Ecto-sp13_S_contig619.16897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1554bp|location=Sequence derived from alignment at Ecto-sp13_S_contig619:11541..15940- (Ectocarpus species13 EcNAP12_S_4_19m) ATGCTTCTGCACCGGAGGAAATGCGAGGTGCGAGTATGCCAAGCTCGACA TCTGGTTCCCAAGGGCAGGAAGAGGAACGGAGACGACAAGCCTGCTGTGC TGGTAGCAGACGCCGTCTGGGCGCTGATGAGCATCGACGGCAAACACAAC ACAACTGAGAGCTGCCGGAACATCGAACATCCCTCGTGGGAGCGGGTAGC CGTCTTCGACCTCAACCTCTGCCGTGCTGCTGAGGGGATTGCAAGGGGCG CCCCAGCAAAGCCTCCAAGAGACTCGAACCCCACAGCGGGGGCGGCGGTC GCTTCTTCCTCCGCATCCTCTTCCTCCCGGAATTCAAGTGCAACTTTTGA ACGGCCGAGTGCCGTTGCTGCAGCAGTACCTGCTAGGAAAAACAAAGCAG CAGCAGCAGCAGCAGCAGCAGCAGCAACACCCGCCGCTGCTGCTGTCAAG CGATCGCCGTCGTCACCCCTCAACCCTTTCGCGTTGGCCGAAGCCGAGAC TCAGTCACTGAACCCGTTCGCCTCCAACTTCGTGCCGCCTGCGGCCGCGC CGCTGTCGCCGCCTCCCCCAGCAGCAGCATCCCCAAGATCTAAATCTCCT TGTCCGCCAGCGCCAGCGGCCGCAGCACCGGTTCTTCGGGCATCCATGGT CTTGCATCTCCGCATGCTGCACGGCCGCCTGAGGTCGAAAGAAGTGCTGG GCGATGTAGCCGTCGACTTGGTCCCGCTGATTCGGTCAGGGGGCGACCGG CTGGCCACAGACCGCTTGGAGTGGTTGGGGGAAGAAGATGGCGCGCCGCT GCTGCCGCTGGATGATGGTGACGCCGGCGCGATTACTACTCCTCCTCCTC CTCCGCTTGTTGCGGTTGACACCTGGGTGTCTCTACGACAGGGCACCGCT GAGCTTCGGGTGCAGATACTGATAAAACCCCCAAGGGAACCCGCGAGCAG CAACGTCGGATTTCAACGTGCACAAGTCGGCGGCGACGAAGCGTGGGCCG CTGCTTTCGAAGCCCTTTCGGCCGACGGGCTAGTCAAGACGAGTTTGGAC CTGGAGCAGAGATCCCTCGACGAGCGGCTTTTGGACGTCCAAGAGACGTA CGACTTTAGCGCCGGGAGCGGGTACCGCGAAGGGAAGCCGGACGAGGACG AGGGGGCACGCAACCTGGATCAAGGAAAAGAGGGGGACCCAAAGACACCG GAATGGCCGGCGTGTGAGCCGGAGGCTGCGCGGCTCCGGAGAGATATGCA ACTCGCGGCATTGAGAGATCGCCGGCAATCGATCGCATGGGCAGAGAAAC TGGGCTCGTCAGCCGACTTGCGAGACGCCCTCCGGCGCCCGCCGCCGTTC AGCGCGCGAAGCAGCCAGGGGCCAGCCGCCGGGGGCAAGAGGGCGAAGCC CACCGCTGCGCCTTCTCCGTTCGCTGCTTCCCCTATGTTCCGAGACCTCA AGGAGCTCGTGGCCCAAGGCATCCCGCCAGCGCTTCGGAGCGCTAATCAT CCTCCGTCCGCAGGCGCCGCCGGTGCCAGAAGTCCTGCGGCAGGGGCAGC GGGC back to top
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