mRNA_Ecto-sp13_S_contig619.16898.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig619.16898.1
Unique NamemRNA_Ecto-sp13_S_contig619.16898.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig619.16898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig619contigEcto-sp13_S_contig619:16107..17886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size333
Hectar predicted targeting categoryother localisation
Exons2
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463861.8997107-CDS-Ecto-sp13_S_contig619:16106..163611681463861.8997107-CDS-Ecto-sp13_S_contig619:16106..16361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig619 16107..16361 +
1681463861.909757-CDS-Ecto-sp13_S_contig619:17809..178841681463861.909757-CDS-Ecto-sp13_S_contig619:17809..17884Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig619 17810..17884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig619.16898.1prot_Ecto-sp13_S_contig619.16898.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig619 16107..17884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig619.16898.1

>prot_Ecto-sp13_S_contig619.16898.1 ID=prot_Ecto-sp13_S_contig619.16898.1|Name=mRNA_Ecto-sp13_S_contig619.16898.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
HLGWALPLPSDTQEKIRGKMPGECFPASSRLHQRPRDTSSWSMWPVAKKR
TTRRSFALGIAHAGVRGHDFVAHILRIELQSWPIAQRREARLRESPRCCL
LRRQGQVSVR
back to top

mRNA from alignment at Ecto-sp13_S_contig619:16107..17886+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig619.16898.1 ID=mRNA_Ecto-sp13_S_contig619.16898.1|Name=mRNA_Ecto-sp13_S_contig619.16898.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig619:16107..17886+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCTTGGCTGGGCGTTGCCTCTACCATCTGACACACAAGAGAAAATCCG
CGGGAAGATGCCCGGAGAATGCTTTCCAGCAAGTTCCAGGCTGCATCAAA
GGCCCCGTGACACATCCTCTTGGTCGATGTGGCCAGTGGCGAAGAAGAGA
ACAACAAGGCGGAGTTTTGCACTGGGCATCGCTCACGCTGGTGTGCGGGG
GCATGACTTTGTTGCCCACATCTTGCGCATCGAGTTGCAATCATGGCCGA
TCGCCGTGAGTGCAGGACGATATCACGTCACGGCTAGTTTGAGAAAAAGC
CGAGATTTTCGTGAATGCAAGAGAAACAGCAGTATATATACATCACGCAC
GTGCTGCTGTGGTGTACCACATATTTACACACTGGCCTCGAGACAAAAAT
GAGGCAAATTGATTCGCGCGGGTGTCGTTGGGTTTACGCTTGGCTTTTGG
TATGATAACCCGATGGTGTGCATCATGAAGAAACATCTTCGTGCGCTATC
ACATGGTCAAGGCGAAAACGGCGGTCGGTACAGCAGACAGGGTAAGGTCT
GAACCTAACTGTGAAGATTTTAACGACCGATTGTTGAGTGTCACTCGCTT
TTAGTTTCCCTTCGTTTCCGCAACGGAATGAAGTTTTGCGAAACGAGAAC
ATTTTCACAACGATCAGATTCTTTGGCTTATCATAATTACTCGACTCAAC
TAATTACCCAAATCATCACCGATCCATTAGATGACGAGATGCGGCCCGCC
GGGAGCAGTTCACCAACCTCTTTGACTACTCTCATTCTACAAAAGAGCCA
CGAGTAGCAGCAGTAGTAGCAGTGCCCAGCAGCAACACCGAAAGATTCCC
AGCTGGGAGGTGGGGTTGCCTGCAACGGAGAGGCATGTGGCACGATCGCA
CGTGTGTATGTACAGTATATTCACATCATTAGGAGTCTGCGTGCGATTCT
GGCAGGGAAAAATACGTACAGTCTATACTTGGAAGATATTGCATGGGCAG
CTGGATAACCAGAGGCAGTACAGTAGTATTCGATTGATATCCACTTGACG
ACTAAAATTCACTTGAGCAAGCGTAGAGCTCGGTAAAGGAATGAATGTGT
CCACACAACTGTGAATGGCTACATGGGCATTGGCAATAATCGCTCTCTTC
TCGCCTATCCAAGAGGCTCCGAATTCAGACGTTTGGAAAAACAGTCAACG
AAGTGCATTAAAAGGGGCAGATAGGAACGTTGATCCCTAGACACCGTAGA
TTCCGACCCACACTGGTTAGGTGGTATTTATGTATTATCGTTGACATGAA
CATGCCACTGCGGCTTTATGCAAGCAAACGTCGCGCCCTTCCTTGTGTAC
CAACAAACATTTGGGTAAAGGGCTGTAGCGACTTCCCAGGTTACAGTAAA
TAGCCGTGGAGACGATGAACAACAAACTCAAACGCAGCCCCCTCCACATC
CATGACCTTTTCCCGGAAGTGGGACCCCTTCGTTAATGTTTGGCGTGCCT
GCAAACGAACTGTGGTTCGACGCTCAAAATTGAACCTACGTACAGCATGG
CCGCACCAGTCGAATGGCGGCGCGCATCGTCTACGGCGCCCGCTACTCGC
GCATCATTGCAGACACATGGTCTGTTCACTGTCCTCACCACCGACATTGC
CATCTTCCCACATTTTCGCAATGCATATGCATGCATCCAACCAAACGTCG
CAGCAAAGGAGGGAAGCTAGGCTTCGAGAGTCTCCGCGGTGTTGCCTTCT
TCGTCGCCAAGGACAGGTCAGCGTTCGAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig619:16107..17886+

>mRNA_Ecto-sp13_S_contig619.16898.1 ID=mRNA_Ecto-sp13_S_contig619.16898.1|Name=mRNA_Ecto-sp13_S_contig619.16898.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig619:16107..17886+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCTTGGCTGGGCGTTGCCTCTACCATCTGACACACAAGAGAAAATCCG
CGGGAAGATGCCCGGAGAATGCTTTCCAGCAAGTTCCAGGCTGCATCAAA
GGCCCCGTGACACATCCTCTTGGTCGATGTGGCCAGTGGCGAAGAAGAGA
ACAACAAGGCGGAGTTTTGCACTGGGCATCGCTCACGCTGGTGTGCGGGG
GCATGACTTTGTTGCCCACATCTTGCGCATCGAGTTGCAATCATGGCCGA
TCGCCCAAAGGAGGGAAGCTAGGCTTCGAGAGTCTCCGCGGTGTTGCCTT
CTTCGTCGCCAAGGACAGGTCAGCGTTCGA
back to top